Wall clock time and date at job start Mon Mar 30 2020 07:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76201 * 102.99815 * 2 1 4 4 C 1.39117 * 119.66686 * 180.02562 * 3 2 1 5 5 C 1.38430 * 119.23732 * 179.97438 * 4 3 2 6 6 C 1.38643 * 118.58395 * 359.72465 * 5 4 3 7 7 C 1.38858 * 119.27838 * 0.53425 * 6 5 4 8 8 N 1.39399 * 119.64408 * 179.72621 * 7 6 5 9 9 C 1.34777 * 119.99785 * 185.04471 * 8 7 6 10 10 O 1.21284 * 120.00028 * 354.79469 * 9 8 7 11 11 C 1.50697 * 120.00150 * 174.78979 * 9 8 7 12 12 H 1.08998 * 109.47294 * 299.99855 * 11 9 8 13 13 C 1.53002 * 109.47316 * 60.00213 * 11 9 8 14 14 C 1.50707 * 109.47441 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99352 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00291 * 180.02562 * 14 11 9 17 17 N 1.31509 * 119.99893 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 119.99921 * 359.97438 * 16 14 11 19 19 H 1.48508 * 109.47161 * 90.00159 * 18 16 14 20 20 H 1.48499 * 109.47258 * 210.00029 * 18 16 14 21 21 H 1.48499 * 109.47345 * 330.00198 * 18 16 14 22 22 N 1.32442 * 120.70406 * 359.46034 * 7 6 5 23 23 H 1.09003 * 109.47081 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47062 * 299.99652 * 1 2 3 25 25 H 1.08999 * 109.47395 * 59.99935 * 1 2 3 26 26 H 1.07994 * 120.37716 * 359.95462 * 4 3 2 27 27 H 1.08000 * 120.70619 * 179.97438 * 5 4 3 28 28 H 1.07999 * 120.35913 * 180.26344 * 6 5 4 29 29 H 0.97001 * 120.00317 * 4.78058 * 8 7 6 30 30 H 1.09000 * 109.47074 * 180.02562 * 13 11 9 31 31 H 1.08997 * 109.46691 * 300.00015 * 13 11 9 32 32 H 1.09000 * 109.47075 * 60.00121 * 13 11 9 33 33 H 0.97004 * 119.99415 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5430 2.1159 -0.0005 5 6 3.8443 3.4670 -0.0011 6 6 2.8003 4.3794 -0.0069 7 6 1.4920 3.9143 -0.0007 8 7 0.4365 4.8250 -0.0007 9 6 -0.8329 4.3853 0.1079 10 8 -1.0641 3.1947 0.1105 11 6 -1.9649 5.3729 0.2261 12 1 -1.8213 5.9853 1.1163 13 6 -1.9896 6.2711 -1.0122 14 6 -3.2713 4.6293 0.3340 15 1 -3.2807 3.5494 0.3181 16 6 -4.4543 5.3274 0.4520 17 7 -5.5943 4.6785 0.5457 18 14 -4.4379 7.1952 0.4789 19 1 -4.5601 7.7113 -0.9083 20 1 -5.5777 7.6886 1.2928 21 1 -3.1628 7.6705 1.0732 22 7 1.2361 2.6149 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.3334 1.3800 -0.0002 27 1 4.8706 3.8032 -0.0011 28 1 3.0026 5.4403 -0.0118 29 1 0.6159 5.7754 -0.0750 30 1 -2.8082 6.9858 -0.9265 31 1 -1.0448 6.8090 -1.0898 32 1 -2.1333 5.6587 -1.9024 33 1 -6.4265 5.1697 0.6290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857620092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:35 Heat of formation + Delta-G solvation = -10.503047 kcal Electronic energy + Delta-G solvation = -17799.761135 eV Core-core repulsion = 14951.407353 eV Total energy + Delta-G solvation = -2848.353782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.69199 -39.98743 -35.90678 -35.81403 -33.53196 -33.30668 -30.89566 -29.79076 -27.15109 -25.76966 -24.85697 -23.50910 -21.11845 -19.66837 -18.82125 -17.78830 -17.49312 -16.96171 -16.52780 -16.45328 -16.26072 -15.34919 -15.23712 -14.97578 -14.64106 -14.31095 -14.27985 -14.06041 -13.51691 -13.40592 -12.92560 -12.86403 -12.57129 -12.21860 -11.94490 -11.72512 -11.48405 -11.26056 -10.98667 -10.95528 -10.76159 -9.96799 -9.69477 -8.50499 -8.28802 -6.37334 0.01408 0.38290 0.55734 1.20159 1.32347 1.39185 1.50372 1.83760 2.02539 2.33055 2.84611 3.05265 3.57829 3.99140 4.08416 4.23810 4.24376 4.28022 4.31872 4.37632 4.46907 4.55584 4.71960 4.93884 4.95410 5.01345 5.22622 5.33506 5.41454 5.48770 5.81350 6.13955 6.35306 6.75565 7.01111 7.24340 7.47081 8.88853 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.005524 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.233317 B = 5067.558807 C = 5986.871137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.075 6.075 3 C 0.115 3.885 4 C -0.185 4.185 5 C -0.023 4.023 6 C -0.204 4.204 7 C 0.347 3.653 8 N -0.654 5.654 9 C 0.514 3.486 10 O -0.513 6.513 11 C -0.003 4.003 12 H 0.073 0.927 13 C -0.141 4.141 14 C -0.522 4.522 15 H 0.029 0.971 16 C 0.006 3.994 17 N -0.953 5.953 18 Si 0.960 3.040 19 H -0.260 1.260 20 H -0.301 1.301 21 H -0.227 1.227 22 N -0.527 5.527 23 H 0.122 0.878 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.161 0.839 27 H 0.190 0.810 28 H 0.177 0.823 29 H 0.433 0.567 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.395 2.789 -1.921 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S 0.164 5.836 3 C -0.134 4.134 4 C -0.212 4.212 5 C -0.050 4.050 6 C -0.229 4.229 7 C 0.113 3.887 8 N -0.304 5.304 9 C 0.302 3.698 10 O -0.384 6.384 11 C -0.025 4.025 12 H 0.091 0.909 13 C -0.199 4.199 14 C -0.560 4.560 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.785 3.215 19 H -0.186 1.186 20 H -0.229 1.229 21 H -0.150 1.150 22 N -0.247 5.247 23 H 0.140 0.860 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.179 0.821 27 H 0.207 0.793 28 H 0.194 0.806 29 H 0.274 0.726 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.683 0.634 -1.888 21.774 hybrid contribution -1.194 1.912 0.042 2.254 sum 20.489 2.546 -1.846 20.729 Atomic orbital electron populations 1.23249 0.93694 1.06012 1.05185 1.84808 1.07517 0.99717 1.91555 1.23240 0.92644 0.97989 0.99500 1.21893 0.94451 0.98678 1.06218 1.21790 1.01078 0.90748 0.91398 1.21868 0.89412 1.03563 1.08089 1.18999 0.88208 0.87262 0.94203 1.43774 1.04114 1.10418 1.72052 1.21444 0.83651 0.90319 0.74396 1.90653 1.83561 1.19067 1.45110 1.19278 0.91204 0.93915 0.98109 0.90931 1.22045 1.02067 0.98490 0.97251 1.21059 0.90653 0.93791 1.50507 0.95304 1.26043 0.94350 1.04846 0.93796 1.70081 0.98909 1.38546 1.51712 0.85705 0.78862 0.78260 0.78718 1.18561 1.22878 1.15021 1.67869 1.35831 1.02150 1.18803 0.85973 0.91955 0.91800 0.82105 0.79283 0.80558 0.72617 0.93348 0.89166 0.93723 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.83 10.01 113.37 1.14 -2.69 16 2 S -0.08 -2.20 22.55 -56.49 -1.27 -3.47 16 3 C 0.12 3.62 7.00 84.80 0.59 4.21 16 4 C -0.18 -4.04 9.83 22.53 0.22 -3.82 16 5 C -0.02 -0.38 10.16 22.41 0.23 -0.15 16 6 C -0.20 -4.04 9.93 22.52 0.22 -3.81 16 7 C 0.35 10.92 7.42 132.85 0.99 11.91 16 8 N -0.65 -20.72 5.31 -308.53 -1.64 -22.36 16 9 C 0.51 22.61 7.11 87.66 0.62 23.23 16 10 O -0.51 -27.68 13.72 -3.04 -0.04 -27.72 16 11 C 0.00 -0.15 2.24 -12.28 -0.03 -0.18 16 12 H 0.07 3.00 7.20 -2.39 -0.02 2.98 16 13 C -0.14 -5.19 8.57 71.98 0.62 -4.57 16 14 C -0.52 -31.03 8.96 25.60 0.23 -30.80 16 15 H 0.03 2.03 7.00 -2.91 -0.02 2.01 16 16 C 0.01 0.36 5.45 84.65 0.46 0.82 16 17 N -0.95 -61.20 13.96 21.45 0.30 -60.91 16 18 Si 0.96 42.43 24.37 68.60 1.67 44.10 16 19 H -0.26 -10.72 6.87 99.48 0.68 -10.03 16 20 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.23 -8.53 6.53 99.48 0.65 -7.88 16 22 N -0.53 -19.96 6.95 -189.42 -1.32 -21.27 16 23 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 24 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 27 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 28 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.43 9.30 7.98 -92.71 -0.74 8.56 16 30 H 0.05 1.82 3.27 -2.39 -0.01 1.81 16 31 H 0.09 2.27 7.46 -2.39 -0.02 2.26 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -83.10 291.99 3.31 -79.79 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.32 Total: 17.68 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.29 Total: -5.85 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -2.66 Total: -104.53 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.04 Total: -27.72 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.67 Total: 44.10 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -1.27 Total: -3.47 kcal Total: -83.10 3.31 -79.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857620092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.290 kcal (2) G-P(sol) polarization free energy of solvation -83.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds