Wall clock time and date at job start Mon Mar 30 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99924 * 2 1 4 4 H 1.48495 * 109.47211 * 240.00437 * 3 2 1 5 5 H 1.48497 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46913 * 120.00202 * 3 2 1 7 7 C 1.37875 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00360 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.52988 * 109.47400 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47391 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47409 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00162 * 359.97438 * 12 11 10 14 14 O 1.34226 * 120.00012 * 180.02562 * 12 11 10 15 15 C 1.45202 * 117.00378 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47460 * 180.02562 * 15 14 12 17 17 O 1.21325 * 120.00320 * 359.97438 * 16 15 14 18 18 C 1.46593 * 119.99742 * 180.02562 * 16 15 14 19 19 C 1.47198 * 127.23664 * 180.24416 * 18 16 15 20 20 C 1.34083 * 105.94366 * 180.17565 * 19 18 16 21 21 O 1.34240 * 109.22165 * 359.63219 * 20 19 18 22 22 C 1.33553 * 110.98464 * 0.24264 * 21 20 19 23 23 H 0.96999 * 120.00180 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46946 * 59.99932 * 9 7 2 25 25 H 1.09005 * 109.46679 * 300.00828 * 9 7 2 26 26 H 1.09002 * 109.47438 * 60.00036 * 10 9 7 27 27 H 1.09005 * 109.47413 * 299.99806 * 10 9 7 28 28 H 1.09003 * 109.47267 * 59.99883 * 11 10 9 29 29 H 1.09006 * 109.47169 * 300.00023 * 11 10 9 30 30 H 1.09001 * 109.46807 * 59.99746 * 15 14 12 31 31 H 1.09009 * 109.46744 * 300.00507 * 15 14 12 32 32 H 1.07999 * 127.02936 * 0.04830 * 19 18 16 33 33 H 1.08002 * 125.39311 * 179.90463 * 20 19 18 34 34 H 1.07991 * 125.83937 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4597 -6.1325 -0.0005 13 8 3.6476 -5.9117 -0.0019 14 8 2.0124 -7.3980 -0.0006 15 6 3.0123 -8.4508 -0.0018 16 6 2.3282 -9.7935 -0.0024 17 8 1.1166 -9.8571 -0.0014 18 6 3.1267 -11.0228 -0.0031 19 6 2.6291 -12.4081 -0.0087 20 6 3.7179 -13.1907 -0.0031 21 8 4.8165 -12.4193 -0.0029 22 6 4.4914 -11.1239 -0.0029 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8902 25 1 0.6247 -2.5570 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.8534 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8904 30 1 3.6358 -8.3606 0.8877 31 1 3.6345 -8.3599 -0.8923 32 1 1.5978 -12.7288 -0.0139 33 1 3.7120 -14.2707 -0.0036 34 1 5.1866 -10.2975 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859737935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:18 Heat of formation + Delta-G solvation = -142.099837 kcal Electronic energy + Delta-G solvation = -18540.479607 eV Core-core repulsion = 15211.373738 eV Total energy + Delta-G solvation = -3329.105869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.52518 -41.71115 -40.13219 -37.64416 -36.16628 -34.13080 -34.02537 -31.76062 -30.31961 -29.13885 -26.11305 -24.56470 -22.79729 -22.39976 -21.40775 -20.67412 -19.13109 -18.49252 -18.39324 -17.97220 -17.47148 -17.12485 -16.53139 -16.36708 -16.21080 -15.75402 -15.30849 -15.00947 -14.39555 -14.02086 -13.92123 -13.84098 -13.68987 -13.25475 -13.14423 -12.63564 -12.52986 -12.46613 -11.92996 -11.74334 -11.56738 -11.42044 -11.23249 -10.99250 -10.91303 -10.53153 -9.80115 -8.18931 -6.29335 -0.03972 1.00773 1.11945 1.37781 1.42089 1.44374 1.52523 1.86172 2.01630 2.42758 2.84163 3.14435 3.59939 3.75248 3.80674 4.02458 4.05047 4.13378 4.18958 4.25859 4.54269 4.64383 4.73363 4.90347 5.00591 5.04778 5.13769 5.25488 5.27861 5.53825 5.73473 5.86808 5.93756 6.26356 6.33989 6.66911 6.86523 7.39429 8.92519 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.064539 B = 0.002568 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.741707 B =10898.804478 C =11301.494015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.084 4.084 11 C -0.108 4.108 12 C 0.474 3.526 13 O -0.527 6.527 14 O -0.353 6.353 15 C 0.012 3.988 16 C 0.430 3.570 17 O -0.479 6.479 18 C -0.304 4.304 19 C -0.199 4.199 20 C -0.024 4.024 21 O -0.175 6.175 22 C 0.070 3.930 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.001 0.999 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.931 -27.123 -0.010 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.122 4.122 11 C -0.145 4.145 12 C 0.319 3.681 13 O -0.416 6.416 14 O -0.270 6.270 15 C -0.062 4.062 16 C 0.309 3.691 17 O -0.356 6.356 18 C -0.306 4.306 19 C -0.218 4.218 20 C -0.089 4.089 21 O -0.069 6.069 22 C 0.000 4.000 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.263 0.737 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 9.793 -27.152 -0.010 28.864 hybrid contribution -0.166 1.046 -0.001 1.059 sum 9.627 -26.106 -0.011 27.825 Atomic orbital electron populations 1.70069 1.07625 1.27869 1.51522 1.25943 0.95807 1.03230 0.94750 0.85523 0.78307 0.78235 0.79132 1.19282 1.20722 1.19290 1.21650 0.93514 0.92490 1.50761 0.92486 1.19027 0.94283 0.92348 0.95755 1.21271 0.97832 0.91692 1.01400 1.21534 0.97209 0.88824 1.06975 1.24134 0.89503 0.83462 0.70992 1.90630 1.18997 1.85402 1.46621 1.86609 1.40553 1.15657 1.84167 1.23593 0.91267 0.83947 1.07359 1.21514 0.88220 0.88592 0.70765 1.90586 1.17630 1.89719 1.37683 1.21851 0.95189 0.94584 1.18965 1.23059 1.01299 0.90654 1.06781 1.24601 0.81616 0.98456 1.04179 1.83852 1.36247 1.16916 1.69897 1.25430 0.94829 0.85261 0.94530 0.92706 0.98005 0.98012 0.92918 0.92914 0.86568 0.86559 0.85399 0.85411 0.82688 0.73713 0.72953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.19 4.97 29.84 0.15 1.34 16 10 C -0.08 -3.51 4.44 30.59 0.14 -3.37 16 11 C -0.11 -3.56 5.81 29.85 0.17 -3.39 16 12 C 0.47 14.85 7.96 71.24 0.57 15.42 16 13 O -0.53 -18.25 15.73 21.98 0.35 -17.90 16 14 O -0.35 -10.09 9.75 -45.03 -0.44 -10.53 16 15 C 0.01 0.24 5.42 71.23 0.39 0.63 16 16 C 0.43 9.60 7.20 27.87 0.20 9.80 16 17 O -0.48 -15.05 17.13 15.62 0.27 -14.78 16 18 C -0.30 -5.02 6.29 -19.07 -0.12 -5.14 16 19 C -0.20 -2.99 11.01 23.68 0.26 -2.73 16 20 C -0.02 -0.21 12.02 66.87 0.80 0.59 16 21 O -0.18 -1.79 10.51 5.13 0.05 -1.73 16 22 C 0.07 0.66 11.64 67.49 0.79 1.45 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 26 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 27 H 0.05 2.23 8.10 -2.38 -0.02 2.21 16 28 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.12 3.54 8.14 -2.38 -0.02 3.52 16 30 H 0.13 1.95 8.13 -2.39 -0.02 1.93 16 31 H 0.13 1.95 8.13 -2.38 -0.02 1.93 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.25 0.06 8.06 -2.91 -0.02 0.04 16 34 H 0.25 0.22 8.01 -2.92 -0.02 0.19 16 Total: -1.00 -77.28 313.84 7.68 -69.60 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 1.10 Total: 1.02 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 4.04 Total: -16.06 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: 0.23 Total: -44.95 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.28 7.68 -69.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859737935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.502 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds