Wall clock time and date at job start Mon Mar 30 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 S 1.81406 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.81395 * 102.99891 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47127 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47492 * 180.02562 * 6 5 4 8 8 C 1.35671 * 117.00620 * 179.97438 * 7 6 5 9 9 C 1.39318 * 119.81295 * 359.72397 * 8 7 6 10 10 C 1.36437 * 120.18222 * 179.75942 * 9 8 7 11 11 C 1.40840 * 119.81035 * 0.51622 * 10 9 8 12 12 C 1.41216 * 120.17666 * 179.71969 * 11 10 9 13 13 H 1.07999 * 120.00154 * 204.56615 * 12 11 10 14 14 C 1.39894 * 120.00207 * 24.56755 * 12 11 10 15 15 N 1.30885 * 120.00203 * 17.91580 * 14 12 11 16 16 Si 1.86798 * 119.99906 * 197.92424 * 14 12 11 17 17 H 1.48496 * 109.47412 * 59.99924 * 16 14 12 18 18 H 1.48503 * 109.46955 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47348 * 299.99359 * 16 14 12 20 20 C 1.40825 * 119.64489 * 359.73570 * 11 10 9 21 21 C 1.36445 * 119.81058 * 0.02562 * 20 11 10 22 22 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47191 * 300.00180 * 1 2 3 24 24 H 1.09002 * 109.47118 * 59.99956 * 1 2 3 25 25 H 1.08999 * 109.47448 * 239.98896 * 2 1 3 26 26 H 1.09010 * 109.46885 * 119.99841 * 2 1 3 27 27 H 1.08998 * 109.47165 * 59.99805 * 3 2 1 28 28 H 1.08996 * 109.47197 * 299.99604 * 3 2 1 29 29 H 1.08997 * 109.47509 * 60.00014 * 5 4 3 30 30 H 1.09004 * 109.47186 * 299.99958 * 5 4 3 31 31 H 1.08997 * 109.47672 * 59.99783 * 6 5 4 32 32 H 1.09003 * 109.47277 * 299.99539 * 6 5 4 33 33 H 1.07998 * 119.90796 * 0.02562 * 9 8 7 34 34 H 1.08003 * 120.09601 * 180.25566 * 10 9 8 35 35 H 0.96993 * 120.00366 * 180.02562 * 15 14 12 36 36 H 1.07999 * 120.09628 * 179.97438 * 20 11 10 37 37 H 1.07998 * 119.90864 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 0.0008 5 6 4.2621 3.2098 -0.0001 6 6 5.7823 3.3823 -0.0002 7 8 6.1039 4.7746 -0.0003 8 6 7.4203 5.1029 0.0001 9 6 8.3848 4.0976 0.0065 10 6 9.7108 4.4191 0.0020 11 6 10.1032 5.7717 0.0020 12 6 11.4734 6.1133 0.0033 13 1 11.7913 7.0694 0.3922 14 6 12.4192 5.2132 -0.4990 15 7 12.0396 4.2308 -1.2761 16 14 14.2240 5.4133 -0.0606 17 1 14.3887 5.3219 1.4123 18 1 15.0142 4.3392 -0.7143 19 1 14.7039 6.7376 -0.5312 20 6 9.1219 6.7817 0.0009 21 6 7.8001 6.4432 0.0004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 1.6766 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.8429 3.6800 0.8894 30 1 3.8436 3.6790 -0.8906 31 1 6.2013 2.9122 -0.8899 32 1 6.2013 2.9131 0.8900 33 1 8.0821 3.0609 0.0106 34 1 10.4573 3.6386 0.0027 35 1 12.6953 3.6065 -1.6241 36 1 9.4146 7.8213 0.0013 37 1 7.0462 7.2165 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037143709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:23 Heat of formation + Delta-G solvation = -40.980720 kcal Electronic energy + Delta-G solvation = -16727.369874 eV Core-core repulsion = 13981.234825 eV Total energy + Delta-G solvation = -2746.135050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.81360 -36.47594 -34.99534 -33.44139 -31.49551 -29.63213 -28.90508 -27.65293 -24.89910 -23.52889 -21.81848 -20.99161 -20.22236 -17.38914 -17.14549 -16.22447 -15.93901 -15.47860 -15.37772 -14.61683 -14.04900 -13.89477 -13.85747 -13.38163 -12.98734 -12.74365 -12.63806 -12.33894 -11.88650 -11.76028 -11.46086 -11.33471 -11.20269 -11.14651 -11.05251 -10.96191 -10.56688 -10.11001 -9.90468 -9.80153 -9.36286 -9.00557 -7.81527 -7.65137 -7.02294 -6.72464 -4.25122 1.38080 2.42197 2.78189 2.97102 3.08228 3.10795 3.22772 3.95413 4.20415 4.48377 4.54966 4.61775 4.91900 4.92490 5.08059 5.11932 5.28210 5.35080 5.46851 5.64229 5.66137 5.72797 5.84489 5.86658 5.87721 6.13616 6.27601 6.71250 6.89548 7.06987 7.28283 7.40406 7.55948 7.91294 8.00213 8.15042 8.42889 8.64518 8.90257 8.99053 10.22336 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044581 B = 0.002943 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.922220 B = 9510.960326 C =10039.028406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.085 4.085 4 S -0.252 6.252 5 C -0.084 4.084 6 C 0.086 3.914 7 O -0.328 6.328 8 C -0.011 4.011 9 C -0.172 4.172 10 C -0.134 4.134 11 C 0.088 3.912 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.799 5.799 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.197 4.197 21 C -0.112 4.112 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.280 0.720 36 H 0.100 0.900 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.482 -6.724 1.765 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.234 4.234 4 S -0.025 6.025 5 C -0.233 4.233 6 C 0.009 3.991 7 O -0.245 6.245 8 C -0.054 4.054 9 C -0.191 4.191 10 C -0.153 4.153 11 C 0.086 3.914 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.425 5.425 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.217 4.217 21 C -0.131 4.131 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.833 -7.637 1.617 16.762 hybrid contribution 0.171 0.890 0.044 0.907 sum -14.662 -6.747 1.661 16.225 Atomic orbital electron populations 1.21764 0.94688 1.02126 1.02077 1.21266 0.95987 0.93982 1.03497 1.23429 0.93349 1.01548 1.05045 1.86849 1.07297 1.10191 1.98176 1.23205 0.99806 0.94252 1.05990 1.21954 0.91657 0.83648 1.01877 1.85749 1.24246 1.22941 1.91549 1.18532 0.80409 0.93730 1.12724 1.20631 0.94421 0.96300 1.07717 1.20954 0.93561 0.97280 1.03553 1.17604 0.93064 0.91101 0.89657 1.19441 0.91025 1.02482 1.36345 0.90492 1.25889 1.01551 0.94180 0.92622 1.69830 1.36893 1.13132 1.22650 0.86375 0.81607 0.78850 0.79909 1.18888 1.20415 1.19053 1.20586 0.91617 0.98048 1.11468 1.19603 0.95792 0.92047 1.05614 0.92103 0.92508 0.92493 0.90914 0.90930 0.90030 0.90014 0.89306 0.89290 0.92108 0.92190 0.88682 0.86051 0.90890 0.88170 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.11 -0.83 5.94 -26.73 -0.16 -0.99 16 3 C -0.09 -0.76 5.94 37.16 0.22 -0.54 16 4 S -0.25 -3.12 21.74 -107.50 -2.34 -5.45 16 5 C -0.08 -1.13 6.31 37.16 0.23 -0.90 16 6 C 0.09 1.46 4.74 37.16 0.18 1.64 16 7 O -0.33 -6.81 10.12 -18.72 -0.19 -7.00 16 8 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 9 C -0.17 -4.14 8.96 -39.83 -0.36 -4.49 16 10 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 11 C 0.09 2.38 5.57 -106.80 -0.60 1.78 16 12 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 13 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 14 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 15 N -0.80 -20.88 10.96 55.55 0.61 -20.27 16 16 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 21 C -0.11 -2.63 9.92 -39.83 -0.40 -3.03 16 22 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 31 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.06 1.02 7.63 -51.93 -0.40 0.63 16 33 H 0.10 2.07 6.27 -52.49 -0.33 1.74 16 34 H 0.12 3.28 6.16 -52.48 -0.32 2.96 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 37 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -28.07 323.63 -9.64 -37.71 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.65 Total: 4.00 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -1.92 Total: -27.64 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.19 Total: -7.00 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.34 Total: -5.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.07 -9.64 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037143709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.271 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds