Wall clock time and date at job start Mon Mar 30 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 S 1.81406 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.81395 * 102.99891 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47127 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47492 * 180.02562 * 6 5 4 8 8 C 1.35671 * 117.00620 * 179.97438 * 7 6 5 9 9 C 1.39318 * 119.81295 * 359.72397 * 8 7 6 10 10 C 1.36437 * 120.18222 * 179.75942 * 9 8 7 11 11 C 1.40840 * 119.81035 * 0.51622 * 10 9 8 12 12 C 1.41216 * 120.17666 * 179.71969 * 11 10 9 13 13 H 1.07999 * 120.00154 * 204.56615 * 12 11 10 14 14 C 1.39894 * 120.00207 * 24.56755 * 12 11 10 15 15 N 1.30885 * 120.00203 * 17.91580 * 14 12 11 16 16 Si 1.86798 * 119.99906 * 197.92424 * 14 12 11 17 17 H 1.48496 * 109.47412 * 59.99924 * 16 14 12 18 18 H 1.48503 * 109.46955 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47348 * 299.99359 * 16 14 12 20 20 C 1.40825 * 119.64489 * 359.73570 * 11 10 9 21 21 C 1.36445 * 119.81058 * 0.02562 * 20 11 10 22 22 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47191 * 300.00180 * 1 2 3 24 24 H 1.09002 * 109.47118 * 59.99956 * 1 2 3 25 25 H 1.08999 * 109.47448 * 239.98896 * 2 1 3 26 26 H 1.09010 * 109.46885 * 119.99841 * 2 1 3 27 27 H 1.08998 * 109.47165 * 59.99805 * 3 2 1 28 28 H 1.08996 * 109.47197 * 299.99604 * 3 2 1 29 29 H 1.08997 * 109.47509 * 60.00014 * 5 4 3 30 30 H 1.09004 * 109.47186 * 299.99958 * 5 4 3 31 31 H 1.08997 * 109.47672 * 59.99783 * 6 5 4 32 32 H 1.09003 * 109.47277 * 299.99539 * 6 5 4 33 33 H 1.07998 * 119.90796 * 0.02562 * 9 8 7 34 34 H 1.08003 * 120.09601 * 180.25566 * 10 9 8 35 35 H 0.96993 * 120.00366 * 180.02562 * 15 14 12 36 36 H 1.07999 * 120.09628 * 179.97438 * 20 11 10 37 37 H 1.07998 * 119.90864 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 0.0008 5 6 4.2621 3.2098 -0.0001 6 6 5.7823 3.3823 -0.0002 7 8 6.1039 4.7746 -0.0003 8 6 7.4203 5.1029 0.0001 9 6 8.3848 4.0976 0.0065 10 6 9.7108 4.4191 0.0020 11 6 10.1032 5.7717 0.0020 12 6 11.4734 6.1133 0.0033 13 1 11.7913 7.0694 0.3922 14 6 12.4192 5.2132 -0.4990 15 7 12.0396 4.2308 -1.2761 16 14 14.2240 5.4133 -0.0606 17 1 14.3887 5.3219 1.4123 18 1 15.0142 4.3392 -0.7143 19 1 14.7039 6.7376 -0.5312 20 6 9.1219 6.7817 0.0009 21 6 7.8001 6.4432 0.0004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 1.6766 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.8429 3.6800 0.8894 30 1 3.8436 3.6790 -0.8906 31 1 6.2013 2.9122 -0.8899 32 1 6.2013 2.9131 0.8900 33 1 8.0821 3.0609 0.0106 34 1 10.4573 3.6386 0.0027 35 1 12.6953 3.6065 -1.6241 36 1 9.4146 7.8213 0.0013 37 1 7.0462 7.2165 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037143709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:23 Heat of formation + Delta-G solvation = -53.732952 kcal Electronic energy + Delta-G solvation = -16727.922853 eV Core-core repulsion = 13981.234825 eV Total energy + Delta-G solvation = -2746.688028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57367 -38.28314 -35.59755 -35.31780 -32.88212 -31.55651 -30.75499 -28.26788 -26.77660 -24.91647 -22.97560 -22.52297 -21.88012 -19.29315 -18.85271 -17.24657 -17.17400 -17.14021 -16.28553 -16.26473 -15.78363 -15.08245 -14.74386 -14.60831 -14.45513 -14.20578 -14.10223 -13.69675 -13.47484 -13.12087 -12.87326 -12.71192 -12.65019 -12.38103 -12.25994 -12.05555 -11.74292 -11.69130 -11.58833 -11.27157 -11.00885 -10.87884 -9.59237 -8.95245 -8.78565 -8.61424 -6.24327 0.41395 0.91660 1.02647 1.39441 1.50378 1.52192 1.54333 2.22267 2.68586 2.71367 3.67655 3.77190 3.78176 3.88584 3.92903 4.19661 4.31109 4.36858 4.38943 4.53237 4.55950 4.60987 4.65163 4.84051 4.89246 5.00331 5.13277 5.13895 5.18317 5.34983 5.37423 5.48484 5.64342 5.95109 6.04644 6.20530 6.52586 6.74470 6.93515 7.05960 8.35453 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044581 B = 0.002943 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.922220 B = 9510.960326 C =10039.028406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.073 4.073 4 S -0.287 6.287 5 C -0.073 4.073 6 C 0.082 3.918 7 O -0.330 6.330 8 C -0.005 4.005 9 C -0.176 4.176 10 C -0.157 4.157 11 C 0.055 3.945 12 C -0.498 4.498 13 H 0.079 0.921 14 C 0.032 3.968 15 N -0.831 5.831 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.258 1.258 20 C -0.205 4.205 21 C -0.117 4.117 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.287 0.713 36 H 0.113 0.887 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.679 -6.772 1.995 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.221 4.221 4 S -0.061 6.061 5 C -0.221 4.221 6 C 0.005 3.995 7 O -0.246 6.246 8 C -0.049 4.049 9 C -0.194 4.194 10 C -0.177 4.177 11 C 0.053 3.947 12 C -0.527 4.527 13 H 0.097 0.903 14 C -0.182 4.182 15 N -0.458 5.458 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.183 1.183 20 C -0.224 4.224 21 C -0.136 4.136 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.058 -7.686 1.845 17.898 hybrid contribution 0.348 0.838 -0.041 0.908 sum -15.710 -6.848 1.804 17.232 Atomic orbital electron populations 1.21740 0.93045 1.02867 1.02588 1.21280 0.97210 0.93028 1.03103 1.23547 0.89825 1.02645 1.06090 1.87016 1.11356 1.09419 1.98286 1.23054 0.96920 0.95178 1.06913 1.22159 0.94335 0.81535 1.01450 1.85746 1.22396 1.25358 1.91127 1.18666 0.81505 0.93703 1.11033 1.20802 0.93836 0.97589 1.07216 1.20918 0.94255 0.96991 1.05502 1.17977 0.94063 0.91872 0.90767 1.19715 0.91736 1.03417 1.37875 0.90331 1.26773 1.06117 0.93467 0.91820 1.69889 1.38714 1.13912 1.23266 0.85236 0.75572 0.79213 0.79583 1.18540 1.19374 1.18256 1.20817 0.92039 0.98415 1.11170 1.19913 0.95947 0.92967 1.04758 0.91310 0.91965 0.92007 0.91397 0.91334 0.88914 0.88997 0.88272 0.88466 0.92745 0.92398 0.86988 0.87571 0.90210 0.86867 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.11 -1.44 5.94 30.59 0.18 -1.25 16 3 C -0.07 -1.14 5.94 71.98 0.43 -0.71 16 4 S -0.29 -6.74 21.74 -56.49 -1.23 -7.97 16 5 C -0.07 -1.83 6.31 71.98 0.45 -1.37 16 6 C 0.08 2.70 4.74 71.98 0.34 3.04 16 7 O -0.33 -13.25 10.12 -89.88 -0.91 -14.16 16 8 C -0.01 -0.24 6.71 22.79 0.15 -0.08 16 9 C -0.18 -8.54 8.96 22.11 0.20 -8.34 16 10 C -0.16 -8.53 8.64 22.49 0.19 -8.33 16 11 C 0.06 3.06 5.57 -21.28 -0.12 2.94 16 12 C -0.50 -27.16 9.04 23.40 0.21 -26.95 16 13 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 14 C 0.03 1.65 5.13 85.23 0.44 2.09 16 15 N -0.83 -44.32 10.96 21.82 0.24 -44.08 16 16 Si 0.98 38.64 29.60 68.60 2.03 40.67 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C -0.20 -10.24 9.74 22.48 0.22 -10.02 16 21 C -0.12 -5.42 9.92 22.11 0.22 -5.20 16 22 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.87 7.66 -2.39 -0.02 1.85 16 32 H 0.06 1.94 7.63 -2.39 -0.02 1.92 16 33 H 0.11 4.91 6.27 -2.91 -0.02 4.90 16 34 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 35 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 36 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 37 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -60.43 323.63 4.80 -55.63 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 1.03 Total: 24.75 kcal Atomic # 6 Polarization: -58.48 SS G_CDS: 3.63 Total: -54.85 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.24 Total: -44.08 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.91 Total: -14.16 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -1.23 Total: -7.97 kcal Total: -60.43 4.80 -55.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037143709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.902 kcal (2) G-P(sol) polarization free energy of solvation -60.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds