Wall clock time and date at job start Mon Mar 30 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47051 * 2 1 4 4 S 1.81392 * 109.47233 * 120.00402 * 2 1 3 5 5 C 1.81403 * 103.00120 * 64.99761 * 4 2 1 6 6 C 1.53005 * 109.47145 * 179.97438 * 5 4 2 7 7 O 1.42901 * 109.46850 * 179.97438 * 6 5 4 8 8 C 1.35671 * 116.99781 * 179.97438 * 7 6 5 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.46837 * 299.99759 * 1 2 3 23 23 H 1.09003 * 109.47280 * 59.99348 * 1 2 3 24 24 H 1.09003 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46837 * 240.00241 * 2 1 3 26 26 H 1.09003 * 109.46928 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47611 * 300.00449 * 3 2 1 28 28 H 1.09000 * 109.47103 * 60.00404 * 3 2 1 29 29 H 1.08997 * 109.47143 * 60.00385 * 5 4 2 30 30 H 1.09004 * 109.47174 * 299.99617 * 5 4 2 31 31 H 1.08997 * 109.46763 * 60.00180 * 6 5 4 32 32 H 1.08994 * 109.46860 * 300.00115 * 6 5 4 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.5664 -2.5593 1.2288 6 6 2.0051 -3.4237 2.4127 7 8 1.5569 -4.7660 2.2142 8 6 1.8658 -5.6676 3.1798 9 6 2.5846 -5.2618 4.3021 10 6 2.9039 -6.1633 5.2752 11 6 2.4948 -7.5049 5.1481 12 6 2.8156 -8.4431 6.1537 13 1 3.0047 -8.1093 7.1632 14 6 2.8883 -9.8050 5.8421 15 7 3.0108 -10.1856 4.5959 16 14 2.8105 -11.0803 7.2048 17 1 2.6727 -10.3962 8.5157 18 1 1.6416 -11.9693 6.9846 19 1 4.0559 -11.8890 7.1975 20 6 1.7640 -7.9057 4.0130 21 6 1.4576 -6.9929 3.0464 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.0002 -2.9548 0.3104 30 1 0.4792 -2.5722 1.1523 31 1 1.5717 -3.0284 3.3313 32 1 3.0923 -3.4108 2.4888 33 1 2.8933 -4.2315 4.4004 34 1 3.4647 -5.8480 6.1426 35 1 3.0616 -11.1298 4.3798 36 1 1.4463 -8.9326 3.9082 37 1 0.8968 -7.2985 2.1755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037685672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:26 Heat of formation + Delta-G solvation = -38.256328 kcal Electronic energy + Delta-G solvation = -16920.839023 eV Core-core repulsion = 14174.822112 eV Total energy + Delta-G solvation = -2746.016911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.82228 -36.48407 -35.03762 -33.41762 -31.57064 -29.60231 -28.91907 -27.55672 -24.88691 -23.60485 -21.97224 -20.74358 -20.44950 -17.36859 -17.17113 -16.50322 -15.71407 -15.27283 -15.03803 -14.86415 -14.24334 -13.93451 -13.73963 -13.13117 -12.99904 -12.62750 -12.57300 -12.18016 -12.02336 -11.72284 -11.62577 -11.47562 -11.36944 -11.14921 -11.03860 -10.80864 -10.59676 -9.99508 -9.93129 -9.80027 -9.34161 -9.02282 -7.82768 -7.63822 -7.03526 -6.72262 -4.25331 1.38477 2.39000 2.76954 2.96056 3.09318 3.14603 3.20632 3.95699 4.20654 4.47177 4.55248 4.61821 4.90047 4.94341 5.11851 5.25046 5.33628 5.41161 5.46746 5.53541 5.66109 5.79846 5.80796 5.83394 5.88672 6.10482 6.23285 6.71754 6.98674 7.11564 7.18950 7.46131 7.55924 7.80142 8.00989 8.20598 8.43847 8.65008 8.90362 8.98746 10.22208 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.069021 B = 0.002945 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.573368 B = 9505.318584 C = 9729.014564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.061 4.061 3 C -0.132 4.132 4 S -0.248 6.248 5 C -0.085 4.085 6 C 0.086 3.914 7 O -0.327 6.327 8 C -0.010 4.010 9 C -0.165 4.165 10 C -0.197 4.197 11 C 0.088 3.912 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.798 5.798 16 Si 0.907 3.093 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.135 4.135 21 C -0.119 4.119 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.279 0.721 36 H 0.126 0.874 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 14.763 -7.841 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C -0.191 4.191 4 S -0.022 6.022 5 C -0.233 4.233 6 C 0.009 3.991 7 O -0.244 6.244 8 C -0.053 4.053 9 C -0.184 4.184 10 C -0.217 4.217 11 C 0.086 3.914 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.425 5.425 16 Si 0.731 3.269 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.201 1.201 20 C -0.154 4.154 21 C -0.138 4.138 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.737 14.927 -7.304 16.842 hybrid contribution -0.469 -1.086 -0.340 1.231 sum -3.206 13.841 -7.644 16.133 Atomic orbital electron populations 1.22121 0.93210 1.02699 1.02864 1.23088 0.98870 0.99414 0.97566 1.21602 1.01879 0.92867 1.02717 1.86793 1.75755 1.07062 1.32547 1.23232 1.04447 0.93183 1.02457 1.21955 0.99130 0.82205 0.95852 1.85776 1.76095 1.16932 1.45565 1.18560 1.07134 0.89135 0.90452 1.20432 1.03656 0.98359 0.95949 1.20582 1.06673 0.94622 0.99829 1.17607 0.89673 0.91411 0.92705 1.19501 1.42320 0.90778 0.96646 0.90476 1.25887 0.92285 0.99838 0.96220 1.69840 1.35436 1.18064 1.19128 0.86286 0.78521 0.80135 0.81909 1.18465 1.19746 1.20079 1.20971 1.00481 0.98795 0.95159 1.19824 1.03596 0.90298 1.00037 0.91251 0.91769 0.92258 0.89454 0.91593 0.91124 0.91620 0.89341 0.89238 0.92254 0.92238 0.88722 0.88655 0.90975 0.85633 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.10 37.16 0.34 -0.86 16 2 C -0.06 -0.54 3.38 -26.73 -0.09 -0.63 16 3 C -0.13 -0.96 9.20 37.16 0.34 -0.62 16 4 S -0.25 -2.99 21.15 -107.50 -2.27 -5.26 16 5 C -0.08 -1.13 6.01 37.16 0.22 -0.90 16 6 C 0.09 1.43 4.74 37.16 0.18 1.61 16 7 O -0.33 -6.79 10.12 -18.71 -0.19 -6.97 16 8 C -0.01 -0.22 6.71 -38.78 -0.26 -0.49 16 9 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 10 C -0.20 -4.93 9.74 -39.25 -0.38 -5.32 16 11 C 0.09 2.38 5.57 -106.81 -0.60 1.79 16 12 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 13 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 14 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 15 N -0.80 -20.78 10.96 55.55 0.61 -20.17 16 16 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.13 -3.55 8.64 -39.25 -0.34 -3.89 16 21 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 25 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.13 7.14 -51.92 -0.37 0.76 16 31 H 0.06 0.99 7.64 -51.93 -0.40 0.59 16 32 H 0.06 1.00 7.66 -51.93 -0.40 0.61 16 33 H 0.09 1.94 6.27 -52.49 -0.33 1.61 16 34 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16 37 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -28.08 320.40 -9.36 -37.44 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.53 Total: 4.11 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -1.77 Total: -27.70 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.61 Total: -20.17 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.19 Total: -6.97 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.27 Total: -5.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.08 -9.36 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037685672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.818 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds