Wall clock time and date at job start Mon Mar 30 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47051 * 2 1 4 4 S 1.81392 * 109.47233 * 120.00402 * 2 1 3 5 5 C 1.81403 * 103.00120 * 64.99761 * 4 2 1 6 6 C 1.53005 * 109.47145 * 179.97438 * 5 4 2 7 7 O 1.42901 * 109.46850 * 179.97438 * 6 5 4 8 8 C 1.35671 * 116.99781 * 179.97438 * 7 6 5 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.46837 * 299.99759 * 1 2 3 23 23 H 1.09003 * 109.47280 * 59.99348 * 1 2 3 24 24 H 1.09003 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46837 * 240.00241 * 2 1 3 26 26 H 1.09003 * 109.46928 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47611 * 300.00449 * 3 2 1 28 28 H 1.09000 * 109.47103 * 60.00404 * 3 2 1 29 29 H 1.08997 * 109.47143 * 60.00385 * 5 4 2 30 30 H 1.09004 * 109.47174 * 299.99617 * 5 4 2 31 31 H 1.08997 * 109.46763 * 60.00180 * 6 5 4 32 32 H 1.08994 * 109.46860 * 300.00115 * 6 5 4 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.5664 -2.5593 1.2288 6 6 2.0051 -3.4237 2.4127 7 8 1.5569 -4.7660 2.2142 8 6 1.8658 -5.6676 3.1798 9 6 2.5846 -5.2618 4.3021 10 6 2.9039 -6.1633 5.2752 11 6 2.4948 -7.5049 5.1481 12 6 2.8156 -8.4431 6.1537 13 1 3.0047 -8.1093 7.1632 14 6 2.8883 -9.8050 5.8421 15 7 3.0108 -10.1856 4.5959 16 14 2.8105 -11.0803 7.2048 17 1 2.6727 -10.3962 8.5157 18 1 1.6416 -11.9693 6.9846 19 1 4.0559 -11.8890 7.1975 20 6 1.7640 -7.9057 4.0130 21 6 1.4576 -6.9929 3.0464 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.0002 -2.9548 0.3104 30 1 0.4792 -2.5722 1.1523 31 1 1.5717 -3.0284 3.3313 32 1 3.0923 -3.4108 2.4888 33 1 2.8933 -4.2315 4.4004 34 1 3.4647 -5.8480 6.1426 35 1 3.0616 -11.1298 4.3798 36 1 1.4463 -8.9326 3.9082 37 1 0.8968 -7.2985 2.1755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037685672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:25 Heat of formation + Delta-G solvation = -51.199176 kcal Electronic energy + Delta-G solvation = -16921.400267 eV Core-core repulsion = 14174.822112 eV Total energy + Delta-G solvation = -2746.578155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57648 -38.29184 -35.68314 -35.29397 -32.95878 -31.47152 -30.79995 -28.18031 -26.76658 -24.97443 -22.91287 -22.59248 -22.07601 -19.26649 -18.87335 -17.39881 -17.08181 -17.02184 -16.42826 -15.89328 -15.75681 -15.19885 -14.81897 -14.69479 -14.33989 -14.09241 -14.00950 -13.75750 -13.20679 -13.09373 -12.82702 -12.74151 -12.51621 -12.43746 -12.35632 -12.21983 -12.08509 -11.71423 -11.57072 -11.23098 -10.89794 -10.81764 -9.58500 -8.96326 -8.77029 -8.61109 -6.24636 0.44520 0.92305 1.00413 1.40224 1.50373 1.50605 1.55591 2.22916 2.68435 2.72974 3.67459 3.77001 3.79980 3.84746 3.92811 4.20038 4.30533 4.31560 4.33228 4.56148 4.60747 4.71612 4.76916 4.84980 4.87528 4.94757 5.05129 5.19342 5.23178 5.25118 5.27083 5.54726 5.62644 5.86512 6.03907 6.24267 6.53535 6.75610 6.93551 7.05690 8.35860 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.069021 B = 0.002945 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.573368 B = 9505.318584 C = 9729.014564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.130 4.130 4 S -0.278 6.278 5 C -0.075 4.075 6 C 0.082 3.918 7 O -0.333 6.333 8 C -0.004 4.004 9 C -0.164 4.164 10 C -0.209 4.209 11 C 0.057 3.943 12 C -0.498 4.498 13 H 0.076 0.924 14 C 0.033 3.967 15 N -0.830 5.830 16 Si 0.983 3.017 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.153 4.153 21 C -0.129 4.129 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.288 0.712 36 H 0.113 0.887 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 15.904 -8.410 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.189 4.189 4 S -0.052 6.052 5 C -0.223 4.223 6 C 0.005 3.995 7 O -0.249 6.249 8 C -0.047 4.047 9 C -0.183 4.183 10 C -0.229 4.229 11 C 0.055 3.945 12 C -0.527 4.527 13 H 0.094 0.906 14 C -0.181 4.181 15 N -0.457 5.457 16 Si 0.804 3.196 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.173 4.173 21 C -0.148 4.148 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.022 16.092 -7.889 18.175 hybrid contribution -0.382 -1.248 -0.291 1.337 sum -3.404 14.844 -8.180 17.287 Atomic orbital electron populations 1.22112 0.92391 1.02492 1.03755 1.23243 0.99462 0.99734 0.95584 1.21626 1.01718 0.91831 1.03704 1.86909 1.76333 1.06498 1.35445 1.23078 1.04862 0.93403 1.00959 1.22194 0.99114 0.80486 0.97711 1.85769 1.76069 1.18418 1.44639 1.18643 1.05902 0.89420 0.90783 1.20691 1.02937 0.99447 0.95226 1.20806 1.06932 0.94412 1.00763 1.17963 0.90579 0.92594 0.93398 1.19745 1.44213 0.92102 0.96679 0.90584 1.26756 0.91179 1.01409 0.98734 1.69886 1.35637 1.19086 1.21043 0.85143 0.78904 0.77113 0.78430 1.18218 1.18866 1.19135 1.20918 1.01588 0.98701 0.96056 1.20010 1.03753 0.90824 1.00168 0.91566 0.89645 0.93015 0.88731 0.91916 0.88759 0.91903 0.88861 0.88561 0.92093 0.92373 0.85954 0.87685 0.90119 0.86942 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.10 71.98 0.66 -1.35 16 2 C -0.05 -0.80 3.38 30.59 0.10 -0.69 16 3 C -0.13 -1.57 9.20 71.98 0.66 -0.91 16 4 S -0.28 -6.29 21.15 -56.49 -1.19 -7.48 16 5 C -0.07 -1.87 6.01 71.98 0.43 -1.44 16 6 C 0.08 2.61 4.74 71.98 0.34 2.95 16 7 O -0.33 -13.42 10.12 -89.88 -0.91 -14.33 16 8 C 0.00 -0.16 6.71 22.79 0.15 -0.01 16 9 C -0.16 -7.54 8.96 22.11 0.20 -7.34 16 10 C -0.21 -10.57 9.74 22.49 0.22 -10.36 16 11 C 0.06 3.15 5.57 -21.28 -0.12 3.03 16 12 C -0.50 -27.25 9.04 23.40 0.21 -27.03 16 13 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 14 C 0.03 1.70 5.13 85.24 0.44 2.13 16 15 N -0.83 -43.94 10.96 21.82 0.24 -43.70 16 16 Si 0.98 38.56 29.60 68.60 2.03 40.59 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 18 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 C -0.15 -8.29 8.64 22.48 0.19 -8.10 16 21 C -0.13 -6.35 9.92 22.11 0.22 -6.14 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.05 0.78 6.92 -2.39 -0.02 0.76 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.10 2.27 7.14 -2.39 -0.02 2.25 16 31 H 0.06 1.94 7.64 -2.39 -0.02 1.92 16 32 H 0.06 1.89 7.66 -2.39 -0.02 1.87 16 33 H 0.12 4.83 6.27 -2.91 -0.02 4.81 16 34 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 35 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 36 H 0.11 6.27 6.16 -2.91 -0.02 6.25 16 37 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -60.53 320.40 4.91 -55.62 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.04 Total: 24.56 kcal Atomic # 6 Polarization: -58.96 SS G_CDS: 3.71 Total: -55.25 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.24 Total: -43.70 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.91 Total: -14.33 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -1.19 Total: -7.48 kcal Total: -60.53 4.91 -55.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037685672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.418 kcal (2) G-P(sol) polarization free energy of solvation -60.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds