Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00113 * 2 1 4 4 H 1.48501 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46976 * 299.99445 * 3 2 1 6 6 H 1.48496 * 109.47383 * 59.99400 * 3 2 1 7 7 C 1.37870 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00366 * 0.27757 * 7 2 1 10 10 N 1.46901 * 109.47140 * 175.67740 * 9 7 2 11 11 C 1.46901 * 110.99668 * 292.98414 * 10 9 7 12 12 C 1.50701 * 109.46821 * 170.00425 * 11 10 9 13 13 C 1.34513 * 125.79081 * 89.71669 * 12 11 10 14 14 C 1.41392 * 106.84024 * 179.91090 * 13 12 11 15 15 C 1.34512 * 106.83750 * 0.34983 * 14 13 12 16 16 N 1.48040 * 125.78806 * 179.80956 * 15 14 13 17 17 O 1.21802 * 119.99761 * 359.97438 * 16 15 14 18 18 O 1.21796 * 120.00314 * 179.97438 * 16 15 14 19 19 O 1.34298 * 108.42374 * 359.78212 * 15 14 13 20 20 C 1.46902 * 111.00026 * 169.03089 * 10 9 7 21 21 C 1.53004 * 117.49761 * 4.36746 * 20 10 9 22 22 C 1.52994 * 117.49672 * 295.74584 * 20 10 9 23 23 H 0.97000 * 119.99759 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46647 * 295.67359 * 9 7 2 25 25 H 1.08992 * 109.46980 * 55.67340 * 9 7 2 26 26 H 1.09004 * 109.46898 * 289.99925 * 11 10 9 27 27 H 1.08992 * 109.47411 * 50.00004 * 11 10 9 28 28 H 1.07998 * 126.57993 * 0.02909 * 13 12 11 29 29 H 1.07996 * 126.58075 * 180.13586 * 14 13 12 30 30 H 1.08996 * 115.54846 * 150.07176 * 20 10 9 31 31 H 1.09001 * 117.49852 * 359.97438 * 21 20 10 32 32 H 1.09000 * 117.50155 * 145.02203 * 21 20 10 33 33 H 1.08999 * 117.49832 * 214.97707 * 22 20 10 34 34 H 1.08997 * 117.50308 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 -0.0052 10 7 2.2025 -3.6135 -0.1078 11 6 2.8730 -3.6145 -1.4149 12 6 4.0064 -4.6076 -1.3972 13 6 3.9182 -5.9079 -1.7305 14 6 5.2104 -6.4597 -1.5727 15 6 6.0091 -5.4654 -1.1451 16 7 7.4532 -5.5847 -0.8417 17 8 8.0167 -6.6564 -0.9739 18 8 8.0777 -4.6113 -0.4598 19 8 5.2745 -4.3460 -1.0407 20 6 1.5371 -4.8989 0.1435 21 6 0.0217 -4.8806 0.3537 22 6 0.9556 -5.1322 1.5392 23 1 -0.4850 0.8401 -0.0004 24 1 0.6798 -2.5929 0.9185 25 1 0.5710 -2.5223 -0.8567 26 1 2.1584 -3.8925 -2.1896 27 1 3.2654 -2.6191 -1.6227 28 1 3.0311 -6.4297 -2.0577 29 1 5.4998 -7.4838 -1.7566 30 1 1.9634 -5.7581 -0.3743 31 1 -0.4814 -3.9149 0.3059 32 1 -0.5493 -5.7280 -0.0259 33 1 0.9989 -6.1451 1.9396 34 1 1.0670 -4.3323 2.2711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 60.757952 kcal Electronic energy + Delta-G solvation = -19935.348081 eV Core-core repulsion = 16647.331537 eV Total energy + Delta-G solvation = -3288.016544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.35024 -41.92167 -38.37944 -36.73154 -34.19356 -33.63044 -32.75013 -30.91345 -28.07698 -26.34943 -24.39566 -22.97108 -22.34726 -21.82550 -21.21189 -19.74657 -19.21826 -18.70945 -17.97716 -17.08618 -16.32558 -15.88967 -15.33830 -14.78297 -14.34775 -14.09138 -13.87256 -13.40806 -13.19879 -12.35565 -12.30692 -11.79836 -11.68432 -11.42326 -11.30681 -11.30408 -11.07014 -10.93828 -10.76775 -10.55121 -10.34364 -10.10102 -9.92710 -9.36519 -9.12890 -8.59913 -7.50398 -6.20086 -4.23345 -0.14532 0.58074 1.50620 2.07891 2.87005 3.22544 3.31357 3.36804 4.14807 4.29240 4.31640 4.37349 4.63976 4.83016 5.16155 5.19418 5.24129 5.30338 5.34552 5.40869 5.57408 5.77184 5.90779 6.00541 6.08115 6.15650 6.37381 6.45945 6.59272 6.97158 7.02676 7.54420 7.57101 7.71761 7.89258 8.24761 8.84752 9.43064 10.90125 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.005664 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.095752 B = 4942.589242 C = 6172.554295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.192 3.808 10 N -0.500 5.500 11 C 0.122 3.878 12 C 0.114 3.886 13 C -0.234 4.234 14 C -0.071 4.071 15 C -0.007 4.007 16 N 0.071 4.929 17 O -0.144 6.144 18 O -0.138 6.138 19 O -0.137 6.137 20 C 0.009 3.991 21 C -0.217 4.217 22 C -0.171 4.171 23 H 0.263 0.737 24 H 0.042 0.958 25 H 0.005 0.995 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 -12.735 -4.124 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.069 3.931 10 N -0.224 5.224 11 C -0.005 4.005 12 C 0.059 3.941 13 C -0.254 4.254 14 C -0.093 4.093 15 C -0.140 4.140 16 N 0.591 4.409 17 O -0.356 6.356 18 O -0.358 6.358 19 O -0.031 6.031 20 C -0.101 4.101 21 C -0.256 4.256 22 C -0.209 4.209 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.023 0.977 26 H 0.095 0.905 27 H 0.136 0.864 28 H 0.189 0.811 29 H 0.193 0.807 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.849 -12.195 -3.816 13.345 hybrid contribution 0.092 0.627 -0.417 0.759 sum 3.941 -11.568 -4.233 12.933 Atomic orbital electron populations 1.69948 1.06078 1.27058 1.50241 1.24958 0.94867 0.99417 0.94922 0.86444 0.80255 0.83148 0.77692 1.19454 1.20948 1.20835 1.21192 0.93696 0.89760 1.51246 0.91611 1.19916 0.89754 0.86262 0.97199 1.62020 1.31985 1.02271 1.26086 1.20829 0.88771 0.97796 0.93133 1.23659 0.81747 0.96487 0.92192 1.21795 0.98417 0.93935 1.11227 1.21733 0.91788 0.99790 0.95988 1.22159 0.83977 0.88696 1.19178 1.42163 0.99647 1.00771 0.98365 1.94577 1.67324 1.16076 1.57657 1.94636 1.64600 1.29377 1.47149 1.84052 1.19793 1.32501 1.66766 1.22768 0.92841 0.94161 1.00350 1.23590 0.94266 1.03858 1.03878 1.22977 1.03927 1.01967 0.92074 0.92723 0.94060 0.97705 0.90472 0.86445 0.81068 0.80704 0.87572 0.87068 0.89750 0.89421 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.56 8.29 -34.44 -0.29 -13.85 16 8 H 0.07 1.73 7.40 -52.48 -0.39 1.34 16 9 C 0.19 4.47 3.35 -4.97 -0.02 4.45 16 10 N -0.50 -9.61 4.68 -229.52 -1.07 -10.68 16 11 C 0.12 2.02 5.34 -4.97 -0.03 1.99 16 12 C 0.11 1.69 6.38 -35.62 -0.23 1.46 16 13 C -0.23 -2.70 9.27 -39.70 -0.37 -3.06 16 14 C -0.07 -0.83 10.57 -39.70 -0.42 -1.25 16 15 C -0.01 -0.11 8.24 -10.94 -0.09 -0.20 16 16 N 0.07 1.13 4.46 32.63 0.15 1.27 16 17 O -0.14 -2.13 19.01 -29.46 -0.56 -2.69 16 18 O -0.14 -2.38 19.26 -32.37 -0.62 -3.01 16 19 O -0.14 -2.31 10.65 0.97 0.01 -2.30 16 20 C 0.01 0.14 5.79 -67.71 -0.39 -0.26 16 21 C -0.22 -3.38 9.50 -26.73 -0.25 -3.64 16 22 C -0.17 -2.66 10.00 -26.73 -0.27 -2.93 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.04 1.04 6.17 -51.93 -0.32 0.71 16 25 H 0.01 0.13 7.80 -51.93 -0.40 -0.28 16 26 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 27 H 0.12 2.14 6.80 -51.93 -0.35 1.79 16 28 H 0.17 1.47 7.63 -52.49 -0.40 1.07 16 29 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.43 5.64 -51.93 -0.29 1.13 16 31 H 0.11 2.04 5.88 -51.93 -0.31 1.74 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.72 7.79 -51.93 -0.40 1.32 16 LS Contribution 300.27 15.07 4.53 4.53 Total: -1.00 -28.54 300.27 -8.00 -36.54 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.69 Total: 0.52 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.44 Total: -15.76 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.19 Total: -33.58 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.17 Total: -8.00 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.54 -8.00 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.301 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds