Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00113 * 2 1 4 4 H 1.48501 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46976 * 299.99445 * 3 2 1 6 6 H 1.48496 * 109.47383 * 59.99400 * 3 2 1 7 7 C 1.37870 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00366 * 0.27757 * 7 2 1 10 10 N 1.46901 * 109.47140 * 175.67740 * 9 7 2 11 11 C 1.46901 * 110.99668 * 292.98414 * 10 9 7 12 12 C 1.50701 * 109.46821 * 170.00425 * 11 10 9 13 13 C 1.34513 * 125.79081 * 89.71669 * 12 11 10 14 14 C 1.41392 * 106.84024 * 179.91090 * 13 12 11 15 15 C 1.34512 * 106.83750 * 0.34983 * 14 13 12 16 16 N 1.48040 * 125.78806 * 179.80956 * 15 14 13 17 17 O 1.21802 * 119.99761 * 359.97438 * 16 15 14 18 18 O 1.21796 * 120.00314 * 179.97438 * 16 15 14 19 19 O 1.34298 * 108.42374 * 359.78212 * 15 14 13 20 20 C 1.46902 * 111.00026 * 169.03089 * 10 9 7 21 21 C 1.53004 * 117.49761 * 4.36746 * 20 10 9 22 22 C 1.52994 * 117.49672 * 295.74584 * 20 10 9 23 23 H 0.97000 * 119.99759 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46647 * 295.67359 * 9 7 2 25 25 H 1.08992 * 109.46980 * 55.67340 * 9 7 2 26 26 H 1.09004 * 109.46898 * 289.99925 * 11 10 9 27 27 H 1.08992 * 109.47411 * 50.00004 * 11 10 9 28 28 H 1.07998 * 126.57993 * 0.02909 * 13 12 11 29 29 H 1.07996 * 126.58075 * 180.13586 * 14 13 12 30 30 H 1.08996 * 115.54846 * 150.07176 * 20 10 9 31 31 H 1.09001 * 117.49852 * 359.97438 * 21 20 10 32 32 H 1.09000 * 117.50155 * 145.02203 * 21 20 10 33 33 H 1.08999 * 117.49832 * 214.97707 * 22 20 10 34 34 H 1.08997 * 117.50308 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 -0.0052 10 7 2.2025 -3.6135 -0.1078 11 6 2.8730 -3.6145 -1.4149 12 6 4.0064 -4.6076 -1.3972 13 6 3.9182 -5.9079 -1.7305 14 6 5.2104 -6.4597 -1.5727 15 6 6.0091 -5.4654 -1.1451 16 7 7.4532 -5.5847 -0.8417 17 8 8.0167 -6.6564 -0.9739 18 8 8.0777 -4.6113 -0.4598 19 8 5.2745 -4.3460 -1.0407 20 6 1.5371 -4.8989 0.1435 21 6 0.0217 -4.8806 0.3537 22 6 0.9556 -5.1322 1.5392 23 1 -0.4850 0.8401 -0.0004 24 1 0.6798 -2.5929 0.9185 25 1 0.5710 -2.5223 -0.8567 26 1 2.1584 -3.8925 -2.1896 27 1 3.2654 -2.6191 -1.6227 28 1 3.0311 -6.4297 -2.0577 29 1 5.4998 -7.4838 -1.7566 30 1 1.9634 -5.7581 -0.3743 31 1 -0.4814 -3.9149 0.3059 32 1 -0.5493 -5.7280 -0.0259 33 1 0.9989 -6.1451 1.9396 34 1 1.0670 -4.3323 2.2711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 43.216067 kcal Electronic energy + Delta-G solvation = -19936.108755 eV Core-core repulsion = 16647.331537 eV Total energy + Delta-G solvation = -3288.777217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.45472 -43.10338 -39.77648 -37.91484 -35.62109 -34.89077 -34.41163 -32.24334 -29.61925 -27.92714 -25.65421 -24.63980 -23.46028 -23.09250 -22.35265 -20.90253 -20.58707 -19.88408 -19.16524 -18.84648 -17.57672 -17.39003 -16.78298 -16.33304 -15.90945 -15.22138 -15.05861 -14.60315 -14.33952 -14.18121 -13.64598 -13.43029 -13.01022 -12.88367 -12.73349 -12.62106 -12.53656 -12.52709 -12.36663 -12.00567 -11.75934 -11.54525 -11.18898 -11.15616 -10.65888 -10.28237 -8.98808 -8.26546 -6.36040 -1.29545 -0.50618 0.37474 1.10684 1.35794 1.39077 1.50702 1.75599 2.35226 2.86825 3.06624 3.17666 3.35272 3.45134 3.80124 3.97705 4.10106 4.11292 4.17337 4.36294 4.48650 4.60157 4.69469 4.81897 4.94226 5.03362 5.08116 5.12816 5.23917 5.33329 5.38682 5.58754 5.98519 6.12194 6.35805 6.49068 6.79586 7.34309 8.83495 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.005664 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.095752 B = 4942.589242 C = 6172.554295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.215 3.785 10 N -0.521 5.521 11 C 0.125 3.875 12 C 0.092 3.908 13 C -0.201 4.201 14 C -0.037 4.037 15 C -0.035 4.035 16 N 0.072 4.928 17 O -0.099 6.099 18 O -0.214 6.214 19 O -0.176 6.176 20 C 0.005 3.995 21 C -0.212 4.212 22 C -0.173 4.173 23 H 0.266 0.734 24 H 0.015 0.985 25 H -0.013 1.013 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.214 0.786 29 H 0.219 0.781 30 H 0.145 0.855 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -15.790 -5.244 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.090 3.910 10 N -0.244 5.244 11 C -0.002 4.002 12 C 0.038 3.962 13 C -0.221 4.221 14 C -0.058 4.058 15 C -0.168 4.168 16 N 0.587 4.413 17 O -0.325 6.325 18 O -0.414 6.414 19 O -0.073 6.073 20 C -0.104 4.104 21 C -0.251 4.251 22 C -0.211 4.211 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.005 0.995 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.231 0.769 29 H 0.236 0.764 30 H 0.162 0.838 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.785 -15.100 -4.894 16.318 hybrid contribution 0.090 1.378 -0.112 1.385 sum 3.876 -13.723 -5.006 15.113 Atomic orbital electron populations 1.70042 1.07289 1.27896 1.51271 1.25701 0.95615 1.02525 0.94691 0.85517 0.78819 0.79484 0.77942 1.19609 1.19976 1.20505 1.21487 0.93388 0.91489 1.50706 0.92706 1.19413 0.89577 0.87047 0.94991 1.61795 1.31475 1.02804 1.28290 1.20684 0.89761 0.97332 0.92429 1.23446 0.80817 0.97558 0.94356 1.22259 0.99645 0.91980 1.08208 1.22337 0.90584 1.00565 0.92310 1.22469 0.83454 0.89319 1.21528 1.42316 1.00366 1.00558 0.98054 1.94517 1.67725 1.15500 1.54793 1.94662 1.65610 1.30039 1.51121 1.83983 1.20915 1.34237 1.68138 1.23005 0.93015 0.93434 1.00979 1.23510 0.94130 1.03323 1.04121 1.23039 1.03817 1.02787 0.91441 0.92527 0.96698 0.99544 0.87977 0.89502 0.76884 0.76431 0.83798 0.90822 0.86202 0.85902 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.94 13.29 21.45 0.28 -52.66 16 2 C 0.01 0.77 5.46 84.65 0.46 1.23 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.53 -28.85 8.29 25.60 0.21 -28.63 16 8 H 0.05 3.02 7.40 -2.91 -0.02 3.00 16 9 C 0.21 10.39 3.35 85.56 0.29 10.67 16 10 N -0.52 -20.07 4.68 -880.08 -4.12 -24.19 16 11 C 0.13 4.08 5.34 85.56 0.46 4.54 16 12 C 0.09 2.55 6.38 24.83 0.16 2.71 16 13 C -0.20 -3.63 9.27 22.19 0.21 -3.42 16 14 C -0.04 -0.67 10.57 22.19 0.23 -0.44 16 15 C -0.03 -0.98 8.24 81.07 0.67 -0.32 16 16 N 0.07 2.21 4.46 -154.75 -0.69 1.52 16 17 O -0.10 -2.66 19.01 18.88 0.36 -2.30 16 18 O -0.21 -7.74 19.26 21.68 0.42 -7.33 16 19 O -0.18 -5.94 10.65 2.06 0.02 -5.91 16 20 C 0.00 0.14 5.79 44.91 0.26 0.40 16 21 C -0.21 -6.29 9.50 30.60 0.29 -6.00 16 22 C -0.17 -5.11 10.00 30.59 0.31 -4.80 16 23 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.02 0.80 6.17 -2.39 -0.01 0.78 16 25 H -0.01 -0.67 7.80 -2.39 -0.02 -0.69 16 26 H 0.10 2.76 8.12 -2.38 -0.02 2.74 16 27 H 0.09 3.32 6.80 -2.39 -0.02 3.31 16 28 H 0.21 2.04 7.63 -2.91 -0.02 2.02 16 29 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.14 3.14 5.64 -2.39 -0.01 3.13 16 31 H 0.07 2.78 5.88 -2.39 -0.01 2.76 16 32 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.07 2.40 7.79 -2.39 -0.02 2.38 16 Total: -1.00 -66.58 300.27 2.97 -63.61 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.13 Total: 5.70 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.54 Total: -24.08 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -4.52 Total: -75.34 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.80 Total: -15.54 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.58 2.97 -63.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.826 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds