Wall clock time and date at job start Mon Mar 30 2020 07:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48500 * 109.47067 * 269.99784 * 3 2 1 5 5 H 1.48503 * 109.47497 * 30.00173 * 3 2 1 6 6 H 1.48498 * 109.47057 * 150.00043 * 3 2 1 7 7 C 1.37870 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00464 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47625 * 185.03853 * 9 7 2 11 11 C 1.46904 * 110.99994 * 65.18721 * 10 9 7 12 12 H 1.08998 * 109.46952 * 319.25679 * 11 10 9 13 13 C 1.52998 * 109.47218 * 79.25568 * 11 10 9 14 14 N 1.46899 * 109.47297 * 303.64349 * 13 11 10 15 15 C 1.50699 * 109.47173 * 199.25882 * 11 10 9 16 16 C 1.33384 * 125.20301 * 139.99669 * 15 11 10 17 17 C 1.38426 * 114.92110 * 180.02562 * 16 15 11 18 18 C 1.33386 * 114.92264 * 0.02562 * 17 16 15 19 19 S 1.75885 * 125.20212 * 320.02567 * 15 11 10 20 20 C 1.46892 * 111.00210 * 189.14193 * 10 9 7 21 21 C 1.53005 * 117.50239 * 120.90500 * 20 10 9 22 22 C 1.52994 * 117.50099 * 52.27988 * 20 10 9 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46639 * 65.03420 * 9 7 2 25 25 H 1.08998 * 109.46833 * 305.04487 * 9 7 2 26 26 H 1.08999 * 109.46729 * 63.64048 * 13 11 10 27 27 H 1.08995 * 109.47478 * 183.63833 * 13 11 10 28 28 H 1.00898 * 111.00075 * 179.97438 * 14 13 11 29 29 H 1.00895 * 111.00097 * 303.95278 * 14 13 11 30 30 H 1.08001 * 122.54078 * 0.02562 * 16 15 11 31 31 H 1.08004 * 122.53552 * 179.97438 * 17 16 15 32 32 H 1.07997 * 125.20249 * 180.02562 * 18 17 16 33 33 H 1.09006 * 115.55011 * 266.61075 * 20 10 9 34 34 H 1.09000 * 117.49285 * 359.97438 * 21 20 10 35 35 H 1.08994 * 117.49921 * 145.02228 * 21 20 10 36 36 H 1.09002 * 117.50209 * 214.98091 * 22 20 10 37 37 H 1.09009 * 117.50049 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2010 -3.6130 0.1228 11 6 2.8830 -3.5828 1.4235 12 1 3.1348 -2.5533 1.6780 13 6 1.9597 -4.1624 2.4971 14 7 0.6949 -3.4154 2.5104 15 6 4.1441 -4.4045 1.3486 16 6 5.3097 -4.0768 1.9083 17 6 6.3313 -4.9885 1.7046 18 6 5.9954 -6.0562 0.9790 19 16 4.3043 -5.9418 0.5092 20 6 1.5305 -4.9025 -0.0903 21 6 2.0412 -5.7843 -1.2315 22 6 0.6979 -5.0639 -1.3637 23 1 -0.4850 0.8401 0.0004 24 1 0.6942 -2.5971 -0.9313 25 1 0.5581 -2.5186 0.8416 26 1 1.7601 -5.2110 2.2770 27 1 2.4401 -4.0808 3.4721 28 1 0.0672 -3.7796 3.2114 29 1 0.8586 -2.4294 2.6484 30 1 5.4461 -3.1690 2.4773 31 1 7.3252 -4.8456 2.1023 32 1 6.6599 -6.8673 0.7206 33 1 1.1739 -5.4015 0.8108 34 1 2.8745 -5.4074 -1.8245 35 1 2.0208 -6.8637 -1.0814 36 1 -0.2062 -5.6695 -1.3005 37 1 0.6480 -4.2134 -2.0436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043106523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:05 Heat of formation + Delta-G solvation = 86.005198 kcal Electronic energy + Delta-G solvation = -18817.453106 eV Core-core repulsion = 16109.117330 eV Total energy + Delta-G solvation = -2708.335776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.70440 -37.15996 -34.89946 -32.89113 -31.63752 -29.97810 -27.02042 -25.43290 -23.32759 -22.44189 -21.96562 -21.18604 -18.93218 -18.64594 -16.92983 -16.35849 -15.73806 -15.28066 -14.74798 -14.54449 -14.14779 -13.93942 -13.15214 -12.96999 -12.48065 -12.31712 -12.20056 -11.83782 -11.67963 -11.56354 -11.11093 -10.91475 -10.80748 -10.68125 -10.44276 -10.13807 -9.99299 -9.58817 -9.43706 -8.94589 -8.42566 -8.21948 -8.17179 -7.97017 -6.82177 -5.94052 -3.93534 1.43361 2.13066 2.52280 3.13229 3.33560 3.40466 3.43435 4.43526 4.54403 4.86230 4.90754 5.34152 5.35139 5.39666 5.56739 5.65882 5.68713 5.69998 5.85472 5.91479 5.99229 6.16999 6.20232 6.29076 6.44303 6.56897 6.68421 6.75604 6.81240 6.90278 7.44092 7.60227 7.79912 7.90497 8.04786 8.25475 8.37381 8.70199 9.17819 9.68319 11.15060 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.007421 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.559130 B = 3772.181773 C = 4376.172290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.169 3.831 10 N -0.492 5.492 11 C 0.155 3.845 12 H 0.110 0.890 13 C 0.039 3.961 14 N -0.829 5.829 15 C -0.131 4.131 16 C -0.161 4.161 17 C -0.131 4.131 18 C -0.258 4.258 19 S 0.138 5.862 20 C 0.015 3.985 21 C -0.182 4.182 22 C -0.171 4.171 23 H 0.258 0.742 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.019 0.981 28 H 0.326 0.674 29 H 0.357 0.643 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -11.647 4.544 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.045 3.955 10 N -0.215 5.215 11 C 0.043 3.957 12 H 0.128 0.872 13 C -0.094 4.094 14 N -0.361 5.361 15 C -0.250 4.250 16 C -0.191 4.191 17 C -0.163 4.163 18 C -0.394 4.394 19 S 0.403 5.597 20 C -0.095 4.095 21 C -0.222 4.222 22 C -0.209 4.209 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.138 0.862 29 H 0.172 0.828 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.197 -12.621 2.601 13.895 hybrid contribution 1.284 2.063 2.270 3.325 sum 6.481 -10.558 4.871 13.312 Atomic orbital electron populations 1.69973 1.05749 1.26279 1.51350 1.24897 0.94738 0.98713 0.95946 0.86673 0.79757 0.83896 0.78075 1.20874 1.21491 1.20100 1.21269 0.93235 0.90558 1.49574 0.92616 1.20319 0.91030 0.85177 0.99014 1.62189 1.31190 1.01567 1.26523 1.20154 0.87989 0.98116 0.89440 0.87241 1.22451 0.91053 0.98693 0.97217 1.58974 1.13169 1.08627 1.55359 1.24740 0.99530 0.98761 1.02011 1.20028 0.92159 1.01775 1.05116 1.20009 1.00033 0.94725 1.01499 1.25849 1.01902 1.04008 1.07602 1.84612 1.04397 1.18250 1.52448 1.22519 1.00629 0.94234 0.92097 1.23027 0.98062 0.96968 1.04115 1.22925 0.93661 1.02841 1.01448 0.93213 0.95973 0.91938 0.91283 0.96247 0.86203 0.82752 0.84929 0.85475 0.83071 0.89281 0.88455 0.89873 0.89823 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.72 8.11 -34.44 -0.28 -14.00 16 8 H 0.06 1.54 7.45 -52.48 -0.39 1.15 16 9 C 0.17 4.17 4.35 -4.98 -0.02 4.15 16 10 N -0.49 -10.23 4.50 -221.54 -1.00 -11.23 16 11 C 0.15 2.90 2.38 -68.86 -0.16 2.74 16 12 H 0.11 2.31 6.58 -51.93 -0.34 1.97 16 13 C 0.04 0.63 5.50 -3.83 -0.02 0.61 16 14 N -0.83 -14.11 6.72 -10.37 -0.07 -14.18 16 15 C -0.13 -2.24 5.45 -36.00 -0.20 -2.44 16 16 C -0.16 -2.54 10.04 -41.21 -0.41 -2.96 16 17 C -0.13 -1.85 10.18 -41.21 -0.42 -2.27 16 18 C -0.26 -3.53 11.23 29.04 0.33 -3.20 16 19 S 0.14 2.06 18.79 -107.50 -2.02 0.05 16 20 C 0.02 0.28 3.56 -67.72 -0.24 0.04 16 21 C -0.18 -2.93 7.70 -26.73 -0.21 -3.13 16 22 C -0.17 -3.00 9.65 -26.73 -0.26 -3.26 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.02 0.61 6.38 -51.93 -0.33 0.28 16 25 H 0.06 1.57 4.51 -51.93 -0.23 1.33 16 26 H 0.07 1.10 6.01 -51.93 -0.31 0.79 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.33 4.64 9.08 -39.29 -0.36 4.28 16 29 H 0.36 6.67 8.23 -39.29 -0.32 6.35 16 30 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.59 5.32 -51.93 -0.28 1.31 16 34 H 0.10 1.67 7.95 -51.93 -0.41 1.26 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.96 7.01 -51.92 -0.36 1.59 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -28.47 303.19 -9.81 -38.28 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.31 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.99 Total: -22.22 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.33 Total: -50.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.02 Total: 0.05 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.47 -9.81 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043106523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.284 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds