Wall clock time and date at job start Mon Mar 30 2020 07:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48500 * 109.47067 * 269.99784 * 3 2 1 5 5 H 1.48503 * 109.47497 * 30.00173 * 3 2 1 6 6 H 1.48498 * 109.47057 * 150.00043 * 3 2 1 7 7 C 1.37870 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00464 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47625 * 185.03853 * 9 7 2 11 11 C 1.46904 * 110.99994 * 65.18721 * 10 9 7 12 12 H 1.08998 * 109.46952 * 319.25679 * 11 10 9 13 13 C 1.52998 * 109.47218 * 79.25568 * 11 10 9 14 14 N 1.46899 * 109.47297 * 303.64349 * 13 11 10 15 15 C 1.50699 * 109.47173 * 199.25882 * 11 10 9 16 16 C 1.33384 * 125.20301 * 139.99669 * 15 11 10 17 17 C 1.38426 * 114.92110 * 180.02562 * 16 15 11 18 18 C 1.33386 * 114.92264 * 0.02562 * 17 16 15 19 19 S 1.75885 * 125.20212 * 320.02567 * 15 11 10 20 20 C 1.46892 * 111.00210 * 189.14193 * 10 9 7 21 21 C 1.53005 * 117.50239 * 120.90500 * 20 10 9 22 22 C 1.52994 * 117.50099 * 52.27988 * 20 10 9 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46639 * 65.03420 * 9 7 2 25 25 H 1.08998 * 109.46833 * 305.04487 * 9 7 2 26 26 H 1.08999 * 109.46729 * 63.64048 * 13 11 10 27 27 H 1.08995 * 109.47478 * 183.63833 * 13 11 10 28 28 H 1.00898 * 111.00075 * 179.97438 * 14 13 11 29 29 H 1.00895 * 111.00097 * 303.95278 * 14 13 11 30 30 H 1.08001 * 122.54078 * 0.02562 * 16 15 11 31 31 H 1.08004 * 122.53552 * 179.97438 * 17 16 15 32 32 H 1.07997 * 125.20249 * 180.02562 * 18 17 16 33 33 H 1.09006 * 115.55011 * 266.61075 * 20 10 9 34 34 H 1.09000 * 117.49285 * 359.97438 * 21 20 10 35 35 H 1.08994 * 117.49921 * 145.02228 * 21 20 10 36 36 H 1.09002 * 117.50209 * 214.98091 * 22 20 10 37 37 H 1.09009 * 117.50049 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2010 -3.6130 0.1228 11 6 2.8830 -3.5828 1.4235 12 1 3.1348 -2.5533 1.6780 13 6 1.9597 -4.1624 2.4971 14 7 0.6949 -3.4154 2.5104 15 6 4.1441 -4.4045 1.3486 16 6 5.3097 -4.0768 1.9083 17 6 6.3313 -4.9885 1.7046 18 6 5.9954 -6.0562 0.9790 19 16 4.3043 -5.9418 0.5092 20 6 1.5305 -4.9025 -0.0903 21 6 2.0412 -5.7843 -1.2315 22 6 0.6979 -5.0639 -1.3637 23 1 -0.4850 0.8401 0.0004 24 1 0.6942 -2.5971 -0.9313 25 1 0.5581 -2.5186 0.8416 26 1 1.7601 -5.2110 2.2770 27 1 2.4401 -4.0808 3.4721 28 1 0.0672 -3.7796 3.2114 29 1 0.8586 -2.4294 2.6484 30 1 5.4461 -3.1690 2.4773 31 1 7.3252 -4.8456 2.1023 32 1 6.6599 -6.8673 0.7206 33 1 1.1739 -5.4015 0.8108 34 1 2.8745 -5.4074 -1.8245 35 1 2.0208 -6.8637 -1.0814 36 1 -0.2062 -5.6695 -1.3005 37 1 0.6480 -4.2134 -2.0436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043106523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:04 Heat of formation + Delta-G solvation = 67.425082 kcal Electronic energy + Delta-G solvation = -18818.258800 eV Core-core repulsion = 16109.117330 eV Total energy + Delta-G solvation = -2709.141470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16798 -38.37284 -36.28694 -34.87964 -33.18420 -31.45730 -28.67362 -27.04340 -24.54025 -24.17243 -23.36570 -22.67924 -20.35430 -19.89849 -18.45962 -18.12062 -17.19630 -16.72402 -16.32891 -16.15388 -15.54709 -15.28916 -14.71639 -14.35353 -13.92224 -13.89318 -13.48805 -13.42337 -13.15498 -12.89398 -12.85929 -12.60083 -12.44743 -12.13469 -12.01263 -11.92990 -11.58220 -11.20288 -10.91433 -10.66530 -10.49278 -9.61584 -9.41460 -9.12038 -8.44847 -8.05280 -6.12015 0.26119 0.95864 1.36946 1.40413 1.42442 1.51603 1.97756 2.45123 3.08998 3.24911 3.38611 3.58670 3.96309 4.18455 4.24939 4.32179 4.35397 4.42294 4.57725 4.71745 4.75752 4.82871 4.88023 4.89923 5.08926 5.26527 5.36803 5.42396 5.54855 5.57183 5.72693 5.73944 5.99536 6.21419 6.28071 6.53833 6.64875 6.89171 7.10261 7.53863 9.02105 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.007421 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.559130 B = 3772.181773 C = 4376.172290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.043 0.957 9 C 0.184 3.816 10 N -0.503 5.503 11 C 0.159 3.841 12 H 0.076 0.924 13 C 0.048 3.952 14 N -0.840 5.840 15 C -0.166 4.166 16 C -0.162 4.162 17 C -0.142 4.142 18 C -0.245 4.245 19 S 0.143 5.857 20 C 0.002 3.998 21 C -0.153 4.153 22 C -0.180 4.180 23 H 0.259 0.741 24 H -0.015 1.015 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.342 0.658 29 H 0.345 0.655 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.183 0.817 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 -13.222 5.073 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.058 3.942 10 N -0.226 5.226 11 C 0.048 3.952 12 H 0.094 0.906 13 C -0.084 4.084 14 N -0.373 5.373 15 C -0.284 4.284 16 C -0.192 4.192 17 C -0.172 4.172 18 C -0.381 4.381 19 S 0.408 5.592 20 C -0.107 4.107 21 C -0.193 4.193 22 C -0.218 4.218 23 H 0.068 0.932 24 H 0.003 0.997 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.051 0.949 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.172 0.828 32 H 0.200 0.800 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.783 -14.222 3.139 16.067 hybrid contribution 0.849 2.489 2.101 3.366 sum 7.632 -11.733 5.240 14.946 Atomic orbital electron populations 1.70080 1.07018 1.27042 1.52281 1.25589 0.95488 1.01794 0.95684 0.85704 0.78768 0.80112 0.77875 1.20957 1.20783 1.19494 1.21480 0.92728 0.92023 1.49110 0.93830 1.19980 0.91265 0.86048 0.96859 1.62031 1.30474 1.01676 1.28376 1.19956 0.89182 0.97058 0.89022 0.90603 1.22342 0.90360 0.98595 0.97098 1.58864 1.14044 1.07992 1.56357 1.24585 0.99151 1.00347 1.04367 1.20281 0.92339 1.02167 1.04463 1.20238 1.00749 0.94363 1.01846 1.26231 1.01171 1.04478 1.06171 1.84402 1.05874 1.16723 1.52187 1.22578 1.01758 0.93570 0.92833 1.23024 0.96413 0.98212 1.01609 1.22924 0.95591 1.02660 1.00612 0.93166 0.99703 0.92232 0.90364 0.94875 0.84405 0.84087 0.84840 0.82840 0.79989 0.88494 0.89520 0.86638 0.87651 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 13.29 21.45 0.28 -53.93 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.51 -28.76 8.11 25.60 0.21 -28.55 16 8 H 0.04 2.49 7.45 -2.91 -0.02 2.47 16 9 C 0.18 9.46 4.35 85.56 0.37 9.83 16 10 N -0.50 -21.34 4.50 -854.82 -3.85 -25.19 16 11 C 0.16 6.04 2.38 44.17 0.11 6.14 16 12 H 0.08 3.34 6.58 -2.39 -0.02 3.32 16 13 C 0.05 1.57 5.50 86.30 0.48 2.04 16 14 N -0.84 -28.85 6.72 -186.73 -1.25 -30.10 16 15 C -0.17 -5.52 5.45 24.59 0.13 -5.38 16 16 C -0.16 -4.90 10.04 21.22 0.21 -4.69 16 17 C -0.14 -3.57 10.18 21.22 0.22 -3.35 16 18 C -0.25 -5.83 11.23 66.72 0.75 -5.09 16 19 S 0.14 3.96 18.79 -56.49 -1.06 2.90 16 20 C 0.00 0.08 3.56 44.92 0.16 0.24 16 21 C -0.15 -4.69 7.70 30.60 0.24 -4.45 16 22 C -0.18 -6.30 9.65 30.59 0.30 -6.00 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 24 H -0.02 -0.88 6.38 -2.39 -0.02 -0.89 16 25 H 0.06 3.10 4.51 -2.39 -0.01 3.09 16 26 H 0.08 2.39 6.01 -2.39 -0.01 2.38 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.34 9.61 9.08 -89.70 -0.81 8.80 16 29 H 0.35 13.32 8.23 -89.70 -0.74 12.58 16 30 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.10 3.33 5.32 -2.38 -0.01 3.32 16 34 H 0.09 2.87 7.95 -2.39 -0.02 2.85 16 35 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.07 2.85 7.01 -2.38 -0.02 2.83 16 Total: -1.00 -62.16 303.19 -0.68 -62.84 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.46 Total: 35.02 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.63 Total: -38.09 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -4.82 Total: -109.22 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.06 Total: 2.90 kcal Total: -62.16 -0.68 -62.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043106523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.267 kcal (2) G-P(sol) polarization free energy of solvation -62.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds