Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99901 * 2 1 4 4 H 1.48501 * 109.46899 * 270.00563 * 3 2 1 5 5 H 1.48504 * 109.46839 * 30.00485 * 3 2 1 6 6 H 1.48498 * 109.46733 * 150.00565 * 3 2 1 7 7 C 1.37868 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00126 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47314 * 174.84222 * 9 7 2 11 11 C 1.46898 * 110.99918 * 302.88114 * 10 9 7 12 12 H 1.09005 * 109.47192 * 51.36244 * 11 10 9 13 13 C 1.53001 * 109.46975 * 291.36273 * 11 10 9 14 14 N 1.46903 * 109.47012 * 64.63604 * 13 11 10 15 15 C 1.50696 * 109.46932 * 171.36395 * 11 10 9 16 16 C 1.38430 * 122.53943 * 219.99986 * 15 11 10 17 17 C 1.33381 * 114.92298 * 179.97438 * 16 15 11 18 18 S 1.75888 * 109.59611 * 359.97438 * 17 16 15 19 19 C 1.33389 * 122.54120 * 39.70910 * 15 11 10 20 20 C 1.46898 * 110.99654 * 66.83337 * 10 9 7 21 21 C 1.53000 * 117.52367 * 4.36994 * 20 10 9 22 22 C 1.53007 * 60.00211 * 107.48027 * 21 20 10 23 23 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47345 * 54.83708 * 9 7 2 25 25 H 1.09002 * 109.46815 * 294.84066 * 9 7 2 26 26 H 1.08997 * 109.47176 * 184.63597 * 13 11 10 27 27 H 1.09000 * 109.46770 * 304.63759 * 13 11 10 28 28 H 1.00897 * 110.99817 * 56.05233 * 14 13 11 29 29 H 1.00904 * 110.99821 * 179.97438 * 14 13 11 30 30 H 1.08005 * 122.53460 * 359.95044 * 16 15 11 31 31 H 1.07999 * 125.20620 * 179.97438 * 17 16 15 32 32 H 1.07994 * 125.20414 * 0.02562 * 19 15 11 33 33 H 1.09005 * 115.54797 * 218.66586 * 20 10 9 34 34 H 1.08999 * 117.50278 * 214.97054 * 21 20 10 35 35 H 1.09002 * 117.49733 * 359.97438 * 21 20 10 36 36 H 1.08990 * 117.49951 * 252.51384 * 22 21 20 37 37 H 1.09001 * 117.49485 * 107.48814 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2007 -3.6129 -0.1257 11 6 3.0160 -3.4756 -1.3399 12 1 3.4557 -2.4787 -1.3716 13 6 2.1338 -3.6834 -2.5726 14 7 1.1324 -2.6109 -2.6445 15 6 4.1132 -4.5085 -1.3276 16 6 5.4016 -4.2312 -1.7511 17 6 6.2513 -5.2565 -1.6748 18 16 5.4172 -6.6676 -1.0372 19 6 3.9180 -5.7577 -0.9025 20 6 3.0491 -3.7179 1.0690 21 6 2.7516 -2.7706 2.2330 22 6 2.4047 -4.2564 2.3480 23 1 -0.4850 0.8401 0.0004 24 1 0.5565 -2.5177 -0.8404 25 1 0.6959 -2.5981 0.9323 26 1 2.7525 -3.6634 -3.4697 27 1 1.6296 -4.6470 -2.5003 28 1 1.5739 -1.7037 -2.6473 29 1 0.5371 -2.7255 -3.4511 30 1 5.6963 -3.2583 -2.1161 31 1 7.2923 -5.2251 -1.9607 32 1 2.9822 -6.1507 -0.5336 33 1 4.0919 -3.9757 0.8838 34 1 3.5985 -2.4051 2.8136 35 1 1.9263 -2.0688 2.1124 36 1 1.3513 -4.5322 2.3031 37 1 3.0237 -4.8683 3.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043123910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = 87.975382 kcal Electronic energy + Delta-G solvation = -19014.203870 eV Core-core repulsion = 16305.953528 eV Total energy + Delta-G solvation = -2708.250342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.15922 -36.84978 -34.69120 -32.56694 -31.41782 -29.53298 -27.12958 -25.73121 -23.49611 -22.53296 -21.32360 -20.68142 -18.97158 -18.16048 -17.41618 -16.16381 -15.96397 -15.19190 -14.53668 -14.05912 -13.89780 -13.71735 -13.60559 -12.63957 -12.54999 -12.31576 -12.10435 -11.79707 -11.49042 -11.29217 -11.15938 -10.91847 -10.73907 -10.62958 -10.25392 -9.95830 -9.81815 -9.73680 -9.32914 -9.10714 -8.48062 -8.38763 -8.09164 -7.35705 -6.85288 -5.85685 -3.89355 1.29762 1.92047 2.23845 3.01805 3.30034 3.39314 3.42132 4.49659 4.71677 5.03369 5.19730 5.33674 5.45293 5.57482 5.80204 5.85416 5.90433 5.91915 6.00235 6.03212 6.19409 6.24126 6.29673 6.41495 6.54625 6.68449 6.71081 6.91464 7.01270 7.38144 7.55941 7.86206 7.94480 8.18670 8.27491 8.34606 8.52041 8.67840 9.23985 9.70814 11.18087 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.006798 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.796804 B = 4118.051693 C = 4368.129009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.048 0.952 9 C 0.159 3.841 10 N -0.495 5.495 11 C 0.148 3.852 12 H 0.064 0.936 13 C 0.085 3.915 14 N -0.818 5.818 15 C -0.096 4.096 16 C -0.122 4.122 17 C -0.222 4.222 18 S 0.054 5.946 19 C -0.172 4.172 20 C 0.033 3.967 21 C -0.194 4.194 22 C -0.192 4.192 23 H 0.257 0.743 24 H 0.106 0.894 25 H 0.014 0.986 26 H 0.013 0.987 27 H 0.067 0.933 28 H 0.352 0.648 29 H 0.322 0.678 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.382 -9.736 -4.026 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.702 3.298 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.066 0.934 9 C 0.034 3.966 10 N -0.217 5.217 11 C 0.037 3.963 12 H 0.081 0.919 13 C -0.046 4.046 14 N -0.349 5.349 15 C -0.109 4.109 16 C -0.154 4.154 17 C -0.357 4.357 18 S 0.316 5.684 19 C -0.307 4.307 20 C -0.077 4.077 21 C -0.233 4.233 22 C -0.230 4.230 23 H 0.067 0.933 24 H 0.123 0.877 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.167 0.833 29 H 0.133 0.867 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.119 -11.833 -3.073 14.676 hybrid contribution 1.248 3.541 -0.913 3.864 sum 9.367 -8.292 -3.986 13.130 Atomic orbital electron populations 1.69953 1.05607 1.25974 1.50891 1.24829 0.94532 0.98138 0.96010 0.86916 0.80086 0.85022 0.77808 1.21097 1.21519 1.20359 1.21656 0.92619 0.92142 1.49771 0.93424 1.20615 0.91987 0.84029 0.99975 1.62464 1.14869 1.46227 0.98115 1.20194 0.89633 0.94586 0.91922 0.91851 1.21634 0.92749 0.95972 0.94268 1.58870 1.23784 1.05930 1.46277 1.19125 0.95252 0.95397 1.01110 1.20177 0.92850 0.99910 1.02425 1.25405 1.03401 0.96512 1.10361 1.84094 1.04171 1.15589 1.64544 1.25508 1.00840 0.96800 1.07551 1.22369 0.95478 1.02927 0.86927 1.23591 1.04436 0.92773 1.02472 1.23002 1.01046 0.97731 1.01208 0.93323 0.87725 0.96788 0.96925 0.91416 0.83311 0.86676 0.84661 0.82495 0.81282 0.89197 0.91369 0.85337 0.89478 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.29 55.43 0.74 -24.00 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.87 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.20 4.96 -34.44 -0.17 -13.37 16 8 H 0.05 1.24 6.45 -52.49 -0.34 0.91 16 9 C 0.16 3.82 4.09 -4.97 -0.02 3.80 16 10 N -0.49 -10.08 4.45 -221.52 -0.98 -11.07 16 11 C 0.15 2.73 1.96 -68.87 -0.14 2.59 16 12 H 0.06 1.32 6.08 -51.93 -0.32 1.01 16 13 C 0.09 1.45 6.35 -3.82 -0.02 1.43 16 14 N -0.82 -14.89 6.15 -10.37 -0.06 -14.95 16 15 C -0.10 -1.55 3.19 -106.25 -0.34 -1.88 16 16 C -0.12 -1.77 9.95 -41.21 -0.41 -2.18 16 17 C -0.22 -2.81 11.23 29.03 0.33 -2.49 16 18 S 0.05 0.68 23.34 -107.50 -2.51 -1.83 16 19 C -0.17 -2.57 9.33 29.04 0.27 -2.30 16 20 C 0.03 0.65 4.56 -67.71 -0.31 0.34 16 21 C -0.19 -4.03 8.61 -26.73 -0.23 -4.26 16 22 C -0.19 -3.55 10.24 -26.72 -0.27 -3.82 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 24 H 0.11 2.66 5.18 -51.93 -0.27 2.40 16 25 H 0.01 0.38 6.49 -51.93 -0.34 0.05 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.35 6.92 8.33 -39.29 -0.33 6.59 16 29 H 0.32 5.03 9.08 -39.29 -0.36 4.67 16 30 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.17 2.61 8.02 -52.49 -0.42 2.19 16 33 H 0.09 1.75 6.17 -51.93 -0.32 1.43 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.13 3.11 5.02 -51.93 -0.26 2.85 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 303.95 15.07 4.58 4.58 Total: -1.00 -26.72 303.95 -9.71 -36.44 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -5.04 Total: 15.59 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.41 Total: -20.49 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.31 Total: -50.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.72 -9.71 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043123910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.412 kcal (2) G-P(sol) polarization free energy of solvation -26.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds