Wall clock time and date at job start Mon Mar 30 2020 07:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99901 * 2 1 4 4 H 1.48501 * 109.46899 * 270.00563 * 3 2 1 5 5 H 1.48504 * 109.46839 * 30.00485 * 3 2 1 6 6 H 1.48498 * 109.46733 * 150.00565 * 3 2 1 7 7 C 1.37868 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00126 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47314 * 174.84222 * 9 7 2 11 11 C 1.46898 * 110.99918 * 302.88114 * 10 9 7 12 12 H 1.09005 * 109.47192 * 51.36244 * 11 10 9 13 13 C 1.53001 * 109.46975 * 291.36273 * 11 10 9 14 14 N 1.46903 * 109.47012 * 64.63604 * 13 11 10 15 15 C 1.50696 * 109.46932 * 171.36395 * 11 10 9 16 16 C 1.38430 * 122.53943 * 219.99986 * 15 11 10 17 17 C 1.33381 * 114.92298 * 179.97438 * 16 15 11 18 18 S 1.75888 * 109.59611 * 359.97438 * 17 16 15 19 19 C 1.33389 * 122.54120 * 39.70910 * 15 11 10 20 20 C 1.46898 * 110.99654 * 66.83337 * 10 9 7 21 21 C 1.53000 * 117.52367 * 4.36994 * 20 10 9 22 22 C 1.53007 * 60.00211 * 107.48027 * 21 20 10 23 23 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47345 * 54.83708 * 9 7 2 25 25 H 1.09002 * 109.46815 * 294.84066 * 9 7 2 26 26 H 1.08997 * 109.47176 * 184.63597 * 13 11 10 27 27 H 1.09000 * 109.46770 * 304.63759 * 13 11 10 28 28 H 1.00897 * 110.99817 * 56.05233 * 14 13 11 29 29 H 1.00904 * 110.99821 * 179.97438 * 14 13 11 30 30 H 1.08005 * 122.53460 * 359.95044 * 16 15 11 31 31 H 1.07999 * 125.20620 * 179.97438 * 17 16 15 32 32 H 1.07994 * 125.20414 * 0.02562 * 19 15 11 33 33 H 1.09005 * 115.54797 * 218.66586 * 20 10 9 34 34 H 1.08999 * 117.50278 * 214.97054 * 21 20 10 35 35 H 1.09002 * 117.49733 * 359.97438 * 21 20 10 36 36 H 1.08990 * 117.49951 * 252.51384 * 22 21 20 37 37 H 1.09001 * 117.49485 * 107.48814 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2007 -3.6129 -0.1257 11 6 3.0160 -3.4756 -1.3399 12 1 3.4557 -2.4787 -1.3716 13 6 2.1338 -3.6834 -2.5726 14 7 1.1324 -2.6109 -2.6445 15 6 4.1132 -4.5085 -1.3276 16 6 5.4016 -4.2312 -1.7511 17 6 6.2513 -5.2565 -1.6748 18 16 5.4172 -6.6676 -1.0372 19 6 3.9180 -5.7577 -0.9025 20 6 3.0491 -3.7179 1.0690 21 6 2.7516 -2.7706 2.2330 22 6 2.4047 -4.2564 2.3480 23 1 -0.4850 0.8401 0.0004 24 1 0.5565 -2.5177 -0.8404 25 1 0.6959 -2.5981 0.9323 26 1 2.7525 -3.6634 -3.4697 27 1 1.6296 -4.6470 -2.5003 28 1 1.5739 -1.7037 -2.6473 29 1 0.5371 -2.7255 -3.4511 30 1 5.6963 -3.2583 -2.1161 31 1 7.2923 -5.2251 -1.9607 32 1 2.9822 -6.1507 -0.5336 33 1 4.0919 -3.9757 0.8838 34 1 3.5985 -2.4051 2.8136 35 1 1.9263 -2.0688 2.1124 36 1 1.3513 -4.5322 2.3031 37 1 3.0237 -4.8683 3.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043123910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:51 Heat of formation + Delta-G solvation = 71.205272 kcal Electronic energy + Delta-G solvation = -19014.931077 eV Core-core repulsion = 16305.953528 eV Total energy + Delta-G solvation = -2708.977549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59782 -38.23662 -36.16675 -34.53340 -32.97969 -30.92795 -28.63989 -27.45614 -24.81413 -24.26737 -22.92668 -22.10183 -20.52825 -19.50614 -18.59275 -18.08229 -17.48270 -16.65507 -16.35270 -15.49428 -15.37505 -15.18031 -15.07042 -14.27631 -13.81444 -13.70564 -13.41347 -13.29137 -13.06620 -12.90479 -12.82194 -12.50466 -12.41531 -12.28161 -11.76920 -11.64964 -11.60562 -11.41753 -10.98281 -10.86833 -10.41818 -9.56382 -9.16549 -8.90774 -8.58930 -7.88081 -5.98988 0.21427 0.87778 1.15986 1.38868 1.43564 1.49746 1.86249 2.50009 3.12766 3.34109 3.58074 3.84954 4.21783 4.28638 4.33501 4.39857 4.47858 4.53904 4.64640 4.67513 4.72707 4.87042 4.92902 5.01396 5.14884 5.32017 5.33290 5.53431 5.58740 5.64225 5.74713 5.82139 6.27448 6.39015 6.50707 6.59065 6.84586 6.91445 7.23499 7.63753 9.11872 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.006798 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.796804 B = 4118.051693 C = 4368.129009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.503 4.503 8 H 0.039 0.961 9 C 0.176 3.824 10 N -0.493 5.493 11 C 0.152 3.848 12 H 0.036 0.964 13 C 0.091 3.909 14 N -0.833 5.833 15 C -0.108 4.108 16 C -0.145 4.145 17 C -0.209 4.209 18 S 0.103 5.897 19 C -0.186 4.186 20 C 0.032 3.968 21 C -0.210 4.210 22 C -0.168 4.168 23 H 0.255 0.745 24 H 0.094 0.906 25 H -0.022 1.022 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.342 0.658 29 H 0.335 0.665 30 H 0.138 0.862 31 H 0.187 0.813 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.617 -11.144 -4.430 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.050 3.950 10 N -0.215 5.215 11 C 0.040 3.960 12 H 0.054 0.946 13 C -0.040 4.040 14 N -0.364 5.364 15 C -0.121 4.121 16 C -0.176 4.176 17 C -0.345 4.345 18 S 0.366 5.634 19 C -0.322 4.322 20 C -0.078 4.078 21 C -0.249 4.249 22 C -0.206 4.206 23 H 0.064 0.936 24 H 0.111 0.889 25 H -0.004 1.004 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.204 0.796 32 H 0.179 0.821 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.368 -13.262 -3.491 17.192 hybrid contribution 0.605 3.870 -0.781 3.994 sum 10.973 -9.392 -4.272 15.062 Atomic orbital electron populations 1.70067 1.06837 1.26382 1.52586 1.25391 0.95092 1.00827 0.96258 0.86028 0.78651 0.81727 0.77920 1.20236 1.21982 1.20508 1.21670 0.91961 0.92693 1.47980 0.94322 1.20272 0.92369 0.84853 0.97460 1.62395 1.15364 1.44263 0.99446 1.20127 0.90272 0.94276 0.91278 0.94627 1.21604 0.92572 0.95375 0.94473 1.58783 1.24495 1.05682 1.47429 1.18937 0.95201 0.95123 1.02800 1.20193 0.92531 1.00883 1.03956 1.25794 1.04495 0.95821 1.08343 1.83960 1.01813 1.14323 1.63290 1.25508 1.02118 0.97067 1.07509 1.22455 0.95954 1.02695 0.86695 1.23401 1.03782 0.93520 1.04189 1.23012 1.00971 0.96118 1.00549 0.93590 0.88853 1.00447 0.95003 0.91356 0.84421 0.85151 0.84394 0.79574 0.82066 0.88207 0.90143 0.89235 0.90487 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.69 13.29 21.44 0.28 -52.40 16 2 C 0.02 1.23 5.46 84.65 0.46 1.69 16 3 Si 0.93 43.31 29.54 68.60 2.03 45.34 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.50 -26.07 4.96 25.60 0.13 -25.95 16 8 H 0.04 2.06 6.45 -2.91 -0.02 2.04 16 9 C 0.18 8.77 4.09 85.56 0.35 9.12 16 10 N -0.49 -20.31 4.45 -854.75 -3.80 -24.11 16 11 C 0.15 5.57 1.96 44.17 0.09 5.66 16 12 H 0.04 1.51 6.08 -2.38 -0.01 1.50 16 13 C 0.09 3.06 6.35 86.30 0.55 3.61 16 14 N -0.83 -30.68 6.15 -186.71 -1.15 -31.83 16 15 C -0.11 -3.30 3.19 -20.92 -0.07 -3.37 16 16 C -0.14 -3.88 9.95 21.22 0.21 -3.67 16 17 C -0.21 -4.57 11.23 66.72 0.75 -3.82 16 18 S 0.10 2.27 23.34 -56.49 -1.32 0.95 16 19 C -0.19 -5.23 9.33 66.72 0.62 -4.61 16 20 C 0.03 1.24 4.56 44.92 0.20 1.44 16 21 C -0.21 -8.77 8.61 30.60 0.26 -8.51 16 22 C -0.17 -6.06 10.24 30.60 0.31 -5.74 16 23 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 24 H 0.09 4.92 5.18 -2.39 -0.01 4.90 16 25 H -0.02 -1.28 6.49 -2.39 -0.02 -1.29 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.34 13.73 8.33 -89.70 -0.75 12.98 16 29 H 0.34 10.50 9.08 -89.69 -0.81 9.68 16 30 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.16 4.75 8.02 -2.91 -0.02 4.73 16 33 H 0.10 3.73 6.17 -2.38 -0.01 3.72 16 34 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.09 4.50 5.02 -2.39 -0.01 4.49 16 36 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -57.95 303.95 -0.55 -58.50 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.47 Total: 37.69 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.87 Total: -34.14 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -4.66 Total: -108.34 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.32 Total: 0.95 kcal Total: -57.95 -0.55 -58.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043123910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.710 kcal (2) G-P(sol) polarization free energy of solvation -57.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds