Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48493 * 109.46875 * 269.99543 * 3 2 1 5 5 H 1.48494 * 109.47240 * 29.99844 * 3 2 1 6 6 H 1.48506 * 109.46814 * 149.99999 * 3 2 1 7 7 C 1.37887 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 181.86436 * 7 2 1 9 9 C 1.50694 * 119.99765 * 1.86241 * 7 2 1 10 10 H 1.08997 * 109.47066 * 180.20718 * 9 7 2 11 11 C 1.50697 * 109.47460 * 300.20734 * 9 7 2 12 12 O 1.21253 * 119.99925 * 95.00432 * 11 9 7 13 13 C 1.47167 * 120.00125 * 274.99860 * 11 9 7 14 14 C 1.39852 * 120.17145 * 179.97438 * 13 11 9 15 15 C 1.37895 * 119.82089 * 180.02562 * 14 13 11 16 16 C 1.38403 * 120.17188 * 359.97438 * 15 14 13 17 17 C 1.38403 * 120.35369 * 0.28214 * 16 15 14 18 18 C 1.37893 * 120.16679 * 359.48558 * 17 16 15 19 19 C 1.50707 * 109.47276 * 60.20706 * 9 7 2 20 20 C 1.38228 * 120.00345 * 202.16089 * 19 9 7 21 21 C 1.38236 * 120.00349 * 179.78909 * 20 19 9 22 22 C 1.38237 * 119.99373 * 0.44014 * 21 20 19 23 23 C 1.38231 * 120.00274 * 359.81376 * 22 21 20 24 24 C 1.38234 * 120.00171 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99801 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.09106 * 0.02562 * 14 13 11 27 27 H 1.08000 * 119.91211 * 180.02562 * 15 14 13 28 28 H 1.08004 * 119.82464 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.91934 * 179.71991 * 17 16 15 30 30 H 1.08001 * 120.08782 * 180.23304 * 18 17 16 31 31 H 1.08011 * 119.99918 * 359.97438 * 20 19 9 32 32 H 1.07995 * 120.00348 * 180.27653 * 21 20 19 33 33 H 1.08008 * 119.99555 * 179.83593 * 22 21 20 34 34 H 1.08000 * 120.00266 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.00235 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0840 -1.1944 0.0310 9 6 1.2515 -2.4988 -0.0413 10 1 1.9595 -3.3274 -0.0307 11 6 0.3470 -2.5956 1.1602 12 8 -0.8138 -2.2561 1.0741 13 6 0.8726 -3.1024 2.4380 14 6 0.0365 -3.1932 3.5554 15 6 0.5367 -3.6686 4.7492 16 6 1.8622 -4.0557 4.8432 17 6 2.6973 -3.9639 3.7434 18 6 2.2109 -3.4951 2.5412 19 6 0.4239 -2.5612 -1.2993 20 6 -0.6735 -3.3991 -1.3639 21 6 -1.4351 -3.4531 -2.5163 22 6 -1.0938 -2.6757 -3.6072 23 6 0.0067 -1.8416 -3.5445 24 6 0.7657 -1.7844 -2.3906 25 1 -0.4850 0.8401 -0.0004 26 1 -0.9981 -2.8919 3.4834 27 1 -0.1077 -3.7398 5.6130 28 1 2.2479 -4.4276 5.7809 29 1 3.7315 -4.2637 3.8258 30 1 2.8628 -3.4275 1.6828 31 1 -0.9377 -4.0096 -0.5129 32 1 -2.2951 -4.1044 -2.5652 33 1 -1.6873 -2.7198 -4.5085 34 1 0.2736 -1.2346 -4.3969 35 1 1.6253 -1.1325 -2.3414 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055026246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = 17.176931 kcal Electronic energy + Delta-G solvation = -19577.864510 eV Core-core repulsion = 16698.807414 eV Total energy + Delta-G solvation = -2879.057096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.31866 -38.14882 -36.76432 -33.59094 -31.16534 -30.50982 -30.40060 -29.74186 -27.32827 -24.31439 -22.87750 -21.95435 -21.33278 -20.37655 -18.74680 -16.93371 -16.20596 -15.64409 -15.03338 -14.75169 -14.65621 -13.96055 -13.80739 -13.60741 -13.19418 -13.04328 -12.68224 -12.37218 -12.26182 -12.01738 -11.56483 -11.35116 -11.16361 -10.95702 -10.77113 -10.57704 -10.46329 -10.07263 -9.66142 -9.36458 -8.72088 -8.54450 -8.36028 -8.18425 -7.76902 -7.40236 -6.07599 -4.25875 1.42808 1.82645 2.51200 2.56597 3.22303 3.31470 3.32137 3.60000 4.30411 4.54679 4.89075 5.11729 5.24503 5.30802 5.33166 5.49885 5.82459 5.88407 5.91672 5.92805 6.02534 6.25725 6.39575 6.40006 6.56563 6.61707 6.75555 6.81053 6.84637 6.91645 7.09932 7.12923 7.25835 7.38629 7.50149 7.60296 7.71090 7.80352 8.12381 8.24889 8.72006 9.09901 9.39416 10.89688 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.008255 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.316859 B = 3391.069914 C = 4469.806878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.071 3.929 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.039 3.961 10 H 0.057 0.943 11 C 0.396 3.604 12 O -0.429 6.429 13 C -0.134 4.134 14 C -0.079 4.079 15 C -0.140 4.140 16 C -0.114 4.114 17 C -0.139 4.139 18 C -0.070 4.070 19 C -0.006 4.006 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.074 4.074 25 H 0.264 0.736 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -6.930 2.852 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.086 0.914 9 C 0.020 3.980 10 H 0.075 0.925 11 C 0.272 3.728 12 O -0.301 6.301 13 C -0.135 4.135 14 C -0.098 4.098 15 C -0.158 4.158 16 C -0.132 4.132 17 C -0.157 4.157 18 C -0.088 4.088 19 C -0.007 4.007 20 C -0.134 4.134 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.092 4.092 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.825 -6.617 2.808 7.416 hybrid contribution 0.352 1.239 0.239 1.310 sum 2.177 -5.377 3.047 6.553 Atomic orbital electron populations 1.70157 1.05288 1.26840 1.44063 1.25110 0.94923 0.99266 0.94491 0.86686 0.80047 0.83673 0.78389 1.20298 1.21185 1.19651 1.20632 0.92773 0.88374 1.55214 0.91413 1.18222 0.93308 0.98195 0.88241 0.92526 1.22791 0.88347 0.73193 0.88504 1.90416 1.19170 1.34592 1.85944 1.21170 0.94685 1.00622 0.96977 1.21438 1.00164 0.96151 0.92008 1.21019 0.95797 1.01358 0.97594 1.21194 0.93999 0.99707 0.98275 1.21091 0.99573 1.01703 0.93369 1.21604 0.94765 0.94598 0.97855 1.19959 0.93836 0.91851 0.95053 1.20902 0.96060 0.99884 0.96543 1.20802 0.99641 1.00711 0.94234 1.20756 0.98459 0.99399 0.98034 1.20991 0.96811 0.99867 0.98206 1.21051 0.99546 0.97014 0.91619 0.92566 0.85628 0.86476 0.86647 0.86249 0.84702 0.88043 0.88036 0.88122 0.87963 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.08 10.11 55.43 0.56 -22.52 16 2 C 0.07 1.84 4.26 -17.82 -0.08 1.76 16 3 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.20 7.29 -34.44 -0.25 -13.45 16 8 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.04 0.92 2.10 -94.08 -0.20 0.72 16 10 H 0.06 1.19 6.74 -51.93 -0.35 0.84 16 11 C 0.40 9.35 4.82 -30.69 -0.15 9.20 16 12 O -0.43 -11.31 13.25 5.58 0.07 -11.23 16 13 C -0.13 -2.71 5.87 -105.06 -0.62 -3.33 16 14 C -0.08 -1.46 9.60 -39.10 -0.38 -1.84 16 15 C -0.14 -2.11 10.03 -39.65 -0.40 -2.51 16 16 C -0.11 -1.58 10.04 -39.46 -0.40 -1.97 16 17 C -0.14 -2.05 10.03 -39.65 -0.40 -2.44 16 18 C -0.07 -1.23 9.37 -39.10 -0.37 -1.60 16 19 C -0.01 -0.15 4.25 -104.62 -0.45 -0.60 16 20 C -0.12 -2.58 8.36 -39.59 -0.33 -2.91 16 21 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 22 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 23 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 24 C -0.07 -1.70 8.37 -39.58 -0.33 -2.03 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.13 2.35 7.65 -52.49 -0.40 1.95 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.14 2.28 6.47 -52.49 -0.34 1.94 16 31 H 0.10 2.22 6.95 -52.48 -0.36 1.85 16 32 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.13 2.92 6.52 -52.49 -0.34 2.58 16 LS Contribution 297.56 15.07 4.48 4.48 Total: -1.00 -29.23 297.56 -9.31 -38.53 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.88 Total: 6.18 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -5.52 Total: -30.71 kcal Atomic # 7 Polarization: -23.08 SS G_CDS: 0.56 Total: -22.52 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.23 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.23 -9.31 -38.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.711 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds