Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48493 * 109.46875 * 269.99543 * 3 2 1 5 5 H 1.48494 * 109.47240 * 29.99844 * 3 2 1 6 6 H 1.48506 * 109.46814 * 149.99999 * 3 2 1 7 7 C 1.37887 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 181.86436 * 7 2 1 9 9 C 1.50694 * 119.99765 * 1.86241 * 7 2 1 10 10 H 1.08997 * 109.47066 * 180.20718 * 9 7 2 11 11 C 1.50697 * 109.47460 * 300.20734 * 9 7 2 12 12 O 1.21253 * 119.99925 * 95.00432 * 11 9 7 13 13 C 1.47167 * 120.00125 * 274.99860 * 11 9 7 14 14 C 1.39852 * 120.17145 * 179.97438 * 13 11 9 15 15 C 1.37895 * 119.82089 * 180.02562 * 14 13 11 16 16 C 1.38403 * 120.17188 * 359.97438 * 15 14 13 17 17 C 1.38403 * 120.35369 * 0.28214 * 16 15 14 18 18 C 1.37893 * 120.16679 * 359.48558 * 17 16 15 19 19 C 1.50707 * 109.47276 * 60.20706 * 9 7 2 20 20 C 1.38228 * 120.00345 * 202.16089 * 19 9 7 21 21 C 1.38236 * 120.00349 * 179.78909 * 20 19 9 22 22 C 1.38237 * 119.99373 * 0.44014 * 21 20 19 23 23 C 1.38231 * 120.00274 * 359.81376 * 22 21 20 24 24 C 1.38234 * 120.00171 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99801 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.09106 * 0.02562 * 14 13 11 27 27 H 1.08000 * 119.91211 * 180.02562 * 15 14 13 28 28 H 1.08004 * 119.82464 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.91934 * 179.71991 * 17 16 15 30 30 H 1.08001 * 120.08782 * 180.23304 * 18 17 16 31 31 H 1.08011 * 119.99918 * 359.97438 * 20 19 9 32 32 H 1.07995 * 120.00348 * 180.27653 * 21 20 19 33 33 H 1.08008 * 119.99555 * 179.83593 * 22 21 20 34 34 H 1.08000 * 120.00266 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.00235 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0840 -1.1944 0.0310 9 6 1.2515 -2.4988 -0.0413 10 1 1.9595 -3.3274 -0.0307 11 6 0.3470 -2.5956 1.1602 12 8 -0.8138 -2.2561 1.0741 13 6 0.8726 -3.1024 2.4380 14 6 0.0365 -3.1932 3.5554 15 6 0.5367 -3.6686 4.7492 16 6 1.8622 -4.0557 4.8432 17 6 2.6973 -3.9639 3.7434 18 6 2.2109 -3.4951 2.5412 19 6 0.4239 -2.5612 -1.2993 20 6 -0.6735 -3.3991 -1.3639 21 6 -1.4351 -3.4531 -2.5163 22 6 -1.0938 -2.6757 -3.6072 23 6 0.0067 -1.8416 -3.5445 24 6 0.7657 -1.7844 -2.3906 25 1 -0.4850 0.8401 -0.0004 26 1 -0.9981 -2.8919 3.4834 27 1 -0.1077 -3.7398 5.6130 28 1 2.2479 -4.4276 5.7809 29 1 3.7315 -4.2637 3.8258 30 1 2.8628 -3.4275 1.6828 31 1 -0.9377 -4.0096 -0.5129 32 1 -2.2951 -4.1044 -2.5652 33 1 -1.6873 -2.7198 -4.5085 34 1 0.2736 -1.2346 -4.3969 35 1 1.6253 -1.1325 -2.3414 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055026246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = 3.448075 kcal Electronic energy + Delta-G solvation = -19578.459838 eV Core-core repulsion = 16698.807414 eV Total energy + Delta-G solvation = -2879.652424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92433 -39.63112 -38.40387 -35.45794 -32.89484 -31.95136 -31.71369 -31.40839 -29.05805 -26.12631 -24.38981 -23.27000 -22.99594 -21.96360 -20.38811 -18.60517 -17.77705 -17.31001 -16.77548 -16.29963 -16.18370 -15.52896 -15.43386 -15.13025 -14.82130 -14.36752 -14.30018 -14.05191 -13.95476 -13.60006 -13.18379 -13.04037 -12.78443 -12.54982 -12.45831 -12.22793 -11.87417 -11.78149 -11.43628 -11.15923 -10.68009 -9.96998 -9.81253 -9.70767 -9.44353 -9.09983 -8.04109 -6.26058 0.04461 0.55717 0.84062 0.90975 1.38794 1.41905 1.49368 2.04280 2.41446 3.06234 3.21419 3.23785 3.73646 4.06308 4.18505 4.27872 4.30423 4.33668 4.48428 4.58251 4.65247 4.68349 4.88103 4.96183 4.99975 5.10117 5.14418 5.29517 5.44280 5.50255 5.58427 5.60553 5.67739 5.75292 5.85833 5.93372 5.98377 6.13153 6.38860 6.49892 6.77798 7.34043 7.41362 8.91118 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.008255 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.316859 B = 3391.069914 C = 4469.806878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.031 3.969 10 H 0.069 0.931 11 C 0.396 3.604 12 O -0.472 6.472 13 C -0.174 4.174 14 C -0.099 4.099 15 C -0.136 4.136 16 C -0.097 4.097 17 C -0.133 4.133 18 C -0.080 4.080 19 C -0.029 4.029 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.097 4.097 25 H 0.254 0.746 26 H 0.107 0.893 27 H 0.149 0.851 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -7.897 3.713 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.012 3.988 10 H 0.087 0.913 11 C 0.274 3.726 12 O -0.348 6.348 13 C -0.175 4.175 14 C -0.117 4.117 15 C -0.153 4.153 16 C -0.114 4.114 17 C -0.151 4.151 18 C -0.098 4.098 19 C -0.029 4.029 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.115 4.115 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.167 0.833 28 H 0.179 0.821 29 H 0.174 0.826 30 H 0.150 0.850 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.106 -7.599 3.667 8.991 hybrid contribution 0.011 1.423 0.028 1.424 sum 3.117 -6.176 3.694 7.843 Atomic orbital electron populations 1.70347 1.06659 1.26455 1.46302 1.25695 0.95333 1.01917 0.94465 0.85855 0.79101 0.80258 0.78437 1.19735 1.22235 1.18600 1.20863 0.92967 0.89048 1.53795 0.91036 1.18326 0.93720 0.98026 0.88760 0.91343 1.23067 0.87742 0.71885 0.89880 1.90372 1.20723 1.36911 1.86756 1.21017 0.96498 1.03770 0.96190 1.21467 0.99417 0.97600 0.93236 1.21381 0.97115 0.99866 0.96966 1.21740 0.92959 0.97086 0.99655 1.21518 1.01469 0.99964 0.92116 1.21690 0.93536 0.95138 0.99443 1.20067 0.94704 0.92854 0.95291 1.20978 0.96570 1.00344 0.97417 1.21179 0.99915 1.00914 0.93576 1.21174 0.98039 0.97986 0.99056 1.21327 0.96631 1.00051 0.98123 1.21052 1.00109 0.97541 0.92787 0.93705 0.87458 0.83333 0.82080 0.82554 0.84971 0.88873 0.85168 0.84253 0.85324 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.95 10.11 21.45 0.22 -49.73 16 2 C 0.03 1.64 4.26 84.66 0.36 2.00 16 3 Si 0.94 42.39 29.54 68.60 2.03 44.41 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.53 -26.95 7.29 25.60 0.19 -26.76 16 8 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.03 1.49 2.10 -13.03 -0.03 1.46 16 10 H 0.07 3.01 6.74 -2.39 -0.02 3.00 16 11 C 0.40 19.64 4.82 28.03 0.14 19.77 16 12 O -0.47 -26.47 13.25 -2.95 -0.04 -26.51 16 13 C -0.17 -7.26 5.87 -20.15 -0.12 -7.38 16 14 C -0.10 -3.70 9.60 22.58 0.22 -3.49 16 15 C -0.14 -3.76 10.03 22.23 0.22 -3.54 16 16 C -0.10 -2.27 10.04 22.35 0.22 -2.04 16 17 C -0.13 -3.46 10.03 22.23 0.22 -3.24 16 18 C -0.08 -2.76 9.37 22.58 0.21 -2.55 16 19 C -0.03 -1.39 4.25 -19.86 -0.08 -1.48 16 20 C -0.13 -6.21 8.36 22.27 0.19 -6.02 16 21 C -0.14 -5.48 10.05 22.27 0.22 -5.25 16 22 C -0.14 -5.37 10.05 22.27 0.22 -5.14 16 23 C -0.14 -5.77 10.05 22.27 0.22 -5.54 16 24 C -0.10 -4.53 8.37 22.27 0.19 -4.35 16 25 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.11 4.29 7.65 -2.91 -0.02 4.26 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.13 4.50 6.47 -2.91 -0.02 4.48 16 31 H 0.09 4.31 6.95 -2.91 -0.02 4.29 16 32 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 35 H 0.11 5.35 6.52 -2.91 -0.02 5.33 16 Total: -1.00 -66.45 297.56 5.89 -60.56 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 1.09 Total: 24.81 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 2.59 Total: -53.54 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.22 Total: -49.73 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.45 5.89 -60.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.010 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds