Wall clock time and date at job start Mon Mar 30 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48494 * 109.47083 * 270.00364 * 3 2 1 5 5 H 1.48503 * 109.46737 * 30.00357 * 3 2 1 6 6 H 1.48500 * 109.47124 * 150.00018 * 3 2 1 7 7 C 1.37876 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00399 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99861 * 180.02562 * 7 2 1 10 10 S 1.81000 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.76207 * 100.00021 * 179.97438 * 10 9 7 12 12 N 1.31268 * 125.79807 * 359.97438 * 11 10 9 13 13 C 1.34363 * 109.30329 * 179.97438 * 12 11 10 14 14 C 1.34387 * 108.34547 * 359.73083 * 13 12 11 15 15 N 1.36103 * 125.80430 * 179.97438 * 11 10 9 16 16 C 1.46505 * 126.50055 * 0.02562 * 15 11 10 17 17 C 1.52996 * 109.46998 * 239.99674 * 16 15 11 18 18 C 1.53000 * 109.47328 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 C 1.53006 * 109.47127 * 300.00449 * 19 18 17 21 21 C 1.52997 * 109.47164 * 59.99836 * 20 19 18 22 22 H 0.97004 * 120.00398 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47237 * 59.99518 * 9 7 2 24 24 H 1.09001 * 109.46619 * 299.99752 * 9 7 2 25 25 H 1.07998 * 125.82774 * 180.02562 * 13 12 11 26 26 H 1.07994 * 126.52511 * 180.30008 * 14 13 12 27 27 H 1.08992 * 109.47276 * 0.02562 * 16 15 11 28 28 H 1.09004 * 109.47368 * 60.00227 * 17 16 15 29 29 H 1.09001 * 109.47372 * 300.00383 * 17 16 15 30 30 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 32 32 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 33 33 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47002 * 299.99574 * 20 19 18 35 35 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47045 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47375 * 59.99966 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 16 4.1148 -2.9006 -0.0016 11 6 5.8529 -2.6107 -0.0014 12 7 6.4351 -1.4342 -0.0008 13 6 7.7686 -1.5985 -0.0002 14 6 8.0324 -2.9162 0.0054 15 7 6.8199 -3.5684 -0.0019 16 6 6.6103 -5.0184 -0.0032 17 6 7.2508 -5.6274 1.2457 18 6 7.0325 -7.1417 1.2441 19 6 7.6742 -7.7482 -0.0054 20 6 7.0337 -7.1391 -1.2544 21 6 7.2521 -5.6248 -1.2527 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6808 0.8904 24 1 3.8751 -0.6797 -0.8895 25 1 8.5031 -0.8067 0.0007 26 1 9.0095 -3.3761 0.0119 27 1 5.5413 -5.2310 -0.0042 28 1 6.7939 -5.1951 2.1360 29 1 8.3198 -5.4148 1.2463 30 1 7.4884 -7.5755 2.1341 31 1 5.9635 -7.3547 1.2433 32 1 8.7431 -7.5352 -0.0047 33 1 7.5183 -8.8269 -0.0069 34 1 5.9647 -7.3521 -1.2552 35 1 7.4912 -7.5708 -2.1446 36 1 6.7954 -5.1909 -2.1423 37 1 8.3211 -5.4118 -1.2519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057526433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:00 Heat of formation + Delta-G solvation = 33.126524 kcal Electronic energy + Delta-G solvation = -17857.076864 eV Core-core repulsion = 15146.448097 eV Total energy + Delta-G solvation = -2710.628767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58607 -38.52284 -33.50308 -33.00131 -31.09839 -29.61034 -29.04958 -28.99388 -23.34644 -22.92453 -22.61129 -21.41574 -20.80396 -19.51118 -17.76460 -16.79542 -15.75008 -15.13661 -15.06364 -14.46525 -14.33895 -14.21958 -13.96305 -13.51680 -13.31484 -12.86203 -12.85761 -12.55097 -12.48247 -12.29575 -11.53862 -11.47443 -10.96389 -10.81633 -10.73007 -10.68651 -10.59485 -10.15176 -9.79072 -9.61797 -9.29344 -9.23990 -8.90579 -8.64620 -6.72453 -6.17379 -4.21148 2.02127 2.24829 3.04644 3.29026 3.34790 3.45281 3.45303 3.47113 4.30439 4.37853 4.43000 4.59259 4.74233 4.90160 5.00638 5.11473 5.14035 5.16023 5.16439 5.32528 5.46387 5.53790 5.63787 5.73253 5.75714 5.81066 5.89247 5.92649 6.00133 6.09736 6.49290 6.79418 6.83295 7.02279 7.25416 7.43145 8.26538 8.32672 8.79874 9.38873 10.93941 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.004898 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.534017 B = 5714.780252 C = 6314.232824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.085 3.915 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.524 4.524 8 H 0.083 0.917 9 C 0.042 3.958 10 S -0.048 6.048 11 C 0.207 3.793 12 N -0.494 5.494 13 C -0.022 4.022 14 C -0.063 4.063 15 N -0.447 5.447 16 C 0.136 3.864 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.125 4.125 22 H 0.268 0.732 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.165 0.835 26 H 0.167 0.833 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.685 -14.101 0.033 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.563 4.563 8 H 0.101 0.899 9 C -0.106 4.106 10 S 0.182 5.818 11 C -0.163 4.163 12 N -0.216 5.216 13 C -0.172 4.172 14 C -0.198 4.198 15 N -0.133 5.133 16 C 0.033 3.967 17 C -0.163 4.163 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.163 4.163 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.182 0.818 26 H 0.184 0.816 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.473 -14.382 0.032 21.868 hybrid contribution 1.655 1.404 -0.023 2.170 sum 18.128 -12.978 0.009 22.294 Atomic orbital electron populations 1.69862 1.06191 1.27460 1.49263 1.24775 0.94700 0.98813 0.93682 0.86814 0.80725 0.83173 0.79147 1.19786 1.20913 1.18224 1.20445 0.86765 0.95391 1.53721 0.89942 1.21549 1.00123 0.87692 1.01272 1.85346 0.85180 1.18855 1.92399 1.25844 0.98021 0.85644 1.06755 1.70894 1.06578 1.22388 1.21726 1.22233 0.92985 0.94636 1.07389 1.22490 0.89659 0.93607 1.14049 1.45755 1.05374 1.06313 1.55848 1.21497 1.02376 0.76460 0.96366 1.21878 1.01293 0.95991 0.97154 1.21513 1.01715 0.94068 0.98204 1.21584 1.00004 0.99873 0.94454 1.21516 1.01715 0.94065 0.98208 1.21879 1.01284 0.95997 0.97149 0.92157 0.93223 0.93702 0.81806 0.81590 0.87670 0.90952 0.91314 0.91303 0.91261 0.91941 0.91614 0.91256 0.91304 0.90957 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.03 9.68 -34.44 -0.33 -15.36 16 8 H 0.08 2.52 7.95 -52.49 -0.42 2.10 16 9 C 0.04 1.07 4.02 36.01 0.14 1.22 16 10 S -0.05 -1.04 21.21 -107.50 -2.28 -3.32 16 11 C 0.21 4.13 7.96 -88.76 -0.71 3.42 16 12 N -0.49 -10.40 10.60 -13.45 -0.14 -10.54 16 13 C -0.02 -0.37 11.84 -17.80 -0.21 -0.58 16 14 C -0.06 -0.90 10.65 -16.28 -0.17 -1.07 16 15 N -0.45 -6.99 2.65 -109.83 -0.29 -7.29 16 16 C 0.14 1.66 2.83 -67.93 -0.19 1.47 16 17 C -0.12 -1.26 5.26 -26.73 -0.14 -1.40 16 18 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 19 C -0.12 -0.86 5.92 -26.73 -0.16 -1.01 16 20 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -1.26 5.27 -26.73 -0.14 -1.40 16 22 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.05 1.30 7.20 -51.92 -0.37 0.93 16 24 H 0.04 1.16 7.57 -51.91 -0.39 0.77 16 25 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.11 1.41 7.18 -51.93 -0.37 1.04 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.64 7.96 -51.93 -0.41 0.23 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -32.00 312.78 -10.00 -42.00 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.78 Total: -2.03 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.33 Total: -14.51 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.34 Total: -44.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.28 Total: -3.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.00 -10.00 -42.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057526433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.127 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds