Wall clock time and date at job start Mon Mar 30 2020 07:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48494 * 109.47083 * 270.00364 * 3 2 1 5 5 H 1.48503 * 109.46737 * 30.00357 * 3 2 1 6 6 H 1.48500 * 109.47124 * 150.00018 * 3 2 1 7 7 C 1.37876 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00399 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99861 * 180.02562 * 7 2 1 10 10 S 1.81000 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.76207 * 100.00021 * 179.97438 * 10 9 7 12 12 N 1.31268 * 125.79807 * 359.97438 * 11 10 9 13 13 C 1.34363 * 109.30329 * 179.97438 * 12 11 10 14 14 C 1.34387 * 108.34547 * 359.73083 * 13 12 11 15 15 N 1.36103 * 125.80430 * 179.97438 * 11 10 9 16 16 C 1.46505 * 126.50055 * 0.02562 * 15 11 10 17 17 C 1.52996 * 109.46998 * 239.99674 * 16 15 11 18 18 C 1.53000 * 109.47328 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 C 1.53006 * 109.47127 * 300.00449 * 19 18 17 21 21 C 1.52997 * 109.47164 * 59.99836 * 20 19 18 22 22 H 0.97004 * 120.00398 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47237 * 59.99518 * 9 7 2 24 24 H 1.09001 * 109.46619 * 299.99752 * 9 7 2 25 25 H 1.07998 * 125.82774 * 180.02562 * 13 12 11 26 26 H 1.07994 * 126.52511 * 180.30008 * 14 13 12 27 27 H 1.08992 * 109.47276 * 0.02562 * 16 15 11 28 28 H 1.09004 * 109.47368 * 60.00227 * 17 16 15 29 29 H 1.09001 * 109.47372 * 300.00383 * 17 16 15 30 30 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 32 32 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 33 33 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47002 * 299.99574 * 20 19 18 35 35 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 36 36 H 1.09002 * 109.47045 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47375 * 59.99966 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 16 4.1148 -2.9006 -0.0016 11 6 5.8529 -2.6107 -0.0014 12 7 6.4351 -1.4342 -0.0008 13 6 7.7686 -1.5985 -0.0002 14 6 8.0324 -2.9162 0.0054 15 7 6.8199 -3.5684 -0.0019 16 6 6.6103 -5.0184 -0.0032 17 6 7.2508 -5.6274 1.2457 18 6 7.0325 -7.1417 1.2441 19 6 7.6742 -7.7482 -0.0054 20 6 7.0337 -7.1391 -1.2544 21 6 7.2521 -5.6248 -1.2527 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6808 0.8904 24 1 3.8751 -0.6797 -0.8895 25 1 8.5031 -0.8067 0.0007 26 1 9.0095 -3.3761 0.0119 27 1 5.5413 -5.2310 -0.0042 28 1 6.7939 -5.1951 2.1360 29 1 8.3198 -5.4148 1.2463 30 1 7.4884 -7.5755 2.1341 31 1 5.9635 -7.3547 1.2433 32 1 8.7431 -7.5352 -0.0047 33 1 7.5183 -8.8269 -0.0069 34 1 5.9647 -7.3521 -1.2552 35 1 7.4912 -7.5708 -2.1446 36 1 6.7954 -5.1909 -2.1423 37 1 8.3211 -5.4118 -1.2519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057526433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:00 Heat of formation + Delta-G solvation = 15.372935 kcal Electronic energy + Delta-G solvation = -17857.846718 eV Core-core repulsion = 15146.448097 eV Total energy + Delta-G solvation = -2711.398621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.86236 -39.35012 -35.28339 -34.51588 -31.81226 -31.57318 -30.51085 -30.00992 -24.92099 -24.11112 -23.64137 -22.71128 -21.96468 -20.38612 -19.25019 -18.71439 -17.07455 -16.36621 -16.30249 -16.03125 -15.41362 -15.23496 -15.14310 -14.88710 -14.68749 -14.56587 -14.30600 -13.78731 -13.57105 -13.24723 -12.75636 -12.65448 -12.37092 -12.20670 -12.16714 -11.84570 -11.60901 -11.44966 -11.41365 -11.25399 -10.93576 -10.92121 -10.51282 -10.26190 -8.42503 -8.32491 -6.52260 0.45069 0.96031 1.31336 1.32521 1.46769 1.52001 1.94370 2.10130 2.27406 2.91327 3.44179 3.64850 3.80096 3.96451 4.05739 4.19027 4.23730 4.43280 4.43341 4.45955 4.56885 4.60329 4.69209 4.71869 4.82809 4.97461 5.00509 5.12755 5.14775 5.22341 5.29246 5.30768 5.31921 5.48624 5.76270 5.99340 6.05423 6.49694 6.99123 7.11867 8.72404 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.004898 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.534017 B = 5714.780252 C = 6314.232824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.035 3.965 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.048 3.952 10 S -0.044 6.044 11 C 0.169 3.831 12 N -0.533 5.533 13 C -0.050 4.050 14 C -0.029 4.029 15 N -0.436 5.436 16 C 0.127 3.873 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.118 4.118 22 H 0.275 0.725 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.191 0.809 26 H 0.217 0.783 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.125 -15.032 0.007 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.574 4.574 8 H 0.068 0.932 9 C -0.101 4.101 10 S 0.187 5.813 11 C -0.201 4.201 12 N -0.256 5.256 13 C -0.200 4.200 14 C -0.165 4.165 15 N -0.121 5.121 16 C 0.025 3.975 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.156 4.156 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.208 0.792 26 H 0.233 0.767 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.899 -15.347 0.004 25.130 hybrid contribution 0.692 1.565 -0.014 1.711 sum 20.591 -13.783 -0.010 24.778 Atomic orbital electron populations 1.69971 1.07776 1.28854 1.50212 1.25642 0.95518 1.02501 0.93039 0.85775 0.79316 0.78787 0.79657 1.18770 1.19452 1.18205 1.20607 0.88587 0.94442 1.53744 0.93219 1.21172 0.98031 0.90738 1.00139 1.85013 0.87702 1.15255 1.93366 1.25278 0.97351 0.86912 1.10563 1.70767 1.09099 1.23590 1.22175 1.22795 0.91794 0.96768 1.08601 1.23247 0.90575 0.92872 1.09789 1.46026 1.04989 1.07215 1.53900 1.21824 1.01945 0.74763 0.98945 1.21857 1.01727 0.97179 0.94856 1.21526 1.01591 0.92512 0.99652 1.21569 1.00395 1.00481 0.92934 1.21529 1.01593 0.92508 0.99656 1.21857 1.01710 0.97187 0.94851 0.91564 0.94324 0.94504 0.79248 0.76671 0.89755 0.92824 0.89580 0.89743 0.92144 0.90654 0.90242 0.92137 0.89746 0.92829 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.96 21.45 0.30 -57.43 16 2 C 0.03 2.06 5.47 84.65 0.46 2.52 16 3 Si 0.94 45.82 27.47 68.60 1.88 47.71 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 7 C -0.53 -31.97 9.68 25.60 0.25 -31.72 16 8 H 0.05 3.21 7.95 -2.91 -0.02 3.19 16 9 C 0.05 2.54 4.02 71.24 0.29 2.82 16 10 S -0.04 -1.96 21.21 -56.49 -1.20 -3.16 16 11 C 0.17 6.75 7.96 179.70 1.43 8.18 16 12 N -0.53 -22.28 10.60 -196.47 -2.08 -24.36 16 13 C -0.05 -1.56 11.84 83.42 0.99 -0.57 16 14 C -0.03 -0.73 10.65 82.89 0.88 0.15 16 15 N -0.44 -13.00 2.65 -501.38 -1.33 -14.32 16 16 C 0.13 2.92 2.83 44.99 0.13 3.05 16 17 C -0.12 -2.09 5.26 30.59 0.16 -1.93 16 18 C -0.11 -1.52 5.92 30.59 0.18 -1.34 16 19 C -0.12 -1.21 5.92 30.60 0.18 -1.03 16 20 C -0.11 -1.52 5.92 30.60 0.18 -1.34 16 21 C -0.12 -2.08 5.27 30.59 0.16 -1.92 16 22 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 23 H 0.04 2.08 7.20 -2.40 -0.02 2.07 16 24 H 0.04 1.96 7.57 -2.40 -0.02 1.94 16 25 H 0.19 4.62 8.06 -2.91 -0.02 4.59 16 26 H 0.22 3.13 8.06 -2.91 -0.02 3.11 16 27 H 0.08 2.29 7.18 -2.39 -0.02 2.27 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.24 7.95 -2.39 -0.02 1.22 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.24 7.96 -2.39 -0.02 1.22 16 Total: -1.00 -72.00 312.78 3.84 -68.16 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.98 Total: 6.53 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 5.29 Total: -23.13 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -3.11 Total: -96.11 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.71 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -1.20 Total: -3.16 kcal Total: -72.00 3.84 -68.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057526433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.532 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds