Wall clock time and date at job start Mon Mar 30 2020 07:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31649 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48505 * 109.46955 * 269.99217 * 3 2 1 5 5 H 1.48492 * 109.47490 * 29.99571 * 3 2 1 6 6 H 1.48504 * 109.46990 * 149.99681 * 3 2 1 7 7 C 1.38641 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.76193 * 100.00178 * 179.97438 * 9 7 2 11 11 N 1.31390 * 125.81406 * 0.02765 * 10 9 7 12 12 C 1.34035 * 109.29727 * 179.97438 * 11 10 9 13 13 C 1.34714 * 108.35376 * 359.77145 * 12 11 10 14 14 N 1.36248 * 125.80975 * 179.97438 * 10 9 7 15 15 C 1.46504 * 126.50522 * 359.97438 * 14 10 9 16 16 C 1.50476 * 108.87622 * 119.99355 * 15 14 10 17 17 C 1.54245 * 108.51856 * 214.83364 * 16 15 14 18 18 C 1.45542 * 112.40792 * 280.00900 * 17 16 15 19 19 C 1.54245 * 112.32700 * 61.98392 * 18 17 16 20 20 C 1.50546 * 108.48390 * 279.88442 * 19 18 17 21 21 C 1.54056 * 108.79980 * 242.92466 * 15 14 10 22 22 H 0.96999 * 120.00066 * 0.02562 * 1 2 3 23 23 H 1.07998 * 125.82669 * 179.97438 * 12 11 10 24 24 H 1.08002 * 126.51616 * 180.22700 * 13 12 11 25 25 H 1.09005 * 108.84690 * 1.43743 * 15 14 10 26 26 H 1.09002 * 109.62685 * 95.12914 * 16 15 14 27 27 H 1.08995 * 109.63266 * 334.54507 * 16 15 14 28 28 H 1.08997 * 108.89530 * 159.25760 * 17 16 15 29 29 H 1.09001 * 108.81525 * 40.70995 * 17 16 15 30 30 H 1.09002 * 108.89596 * 182.69054 * 18 17 16 31 31 H 1.09003 * 108.89788 * 301.28088 * 18 17 16 32 32 H 1.09000 * 109.62486 * 39.68278 * 19 18 17 33 33 H 1.08999 * 109.63051 * 160.25691 * 19 18 17 34 34 H 1.09000 * 108.92627 * 333.51136 * 20 19 18 35 35 H 1.09003 * 108.91864 * 215.01792 * 20 19 18 36 36 H 1.09000 * 108.81295 * 318.41563 * 21 15 14 37 37 H 1.08999 * 108.81700 * 76.69692 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4981 2.0464 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5480 1.4403 0.7001 7 6 2.0097 -1.2006 0.0005 8 1 3.0898 -1.2007 0.0010 9 16 1.1288 -2.7267 0.0005 10 6 2.4786 -3.8592 0.0005 11 7 3.7524 -3.5371 0.0011 12 6 4.4919 -4.6550 0.0014 13 6 3.6595 -5.7143 0.0063 14 7 2.3791 -5.2180 0.0010 15 6 1.1410 -6.0012 0.0022 16 6 1.1092 -6.8634 -1.2307 17 6 -0.3518 -6.9759 -1.7123 18 6 -1.1129 -7.9560 -0.9517 19 6 -1.2155 -7.5869 0.5424 20 6 0.0666 -7.9875 1.2222 21 6 1.0772 -6.8272 1.3010 22 1 -0.4850 0.8400 -0.0004 23 1 5.5710 -4.6992 0.0015 24 1 3.9450 -6.7559 0.0112 25 1 0.2920 -5.3180 -0.0233 26 1 1.4940 -7.8554 -0.9938 27 1 1.7181 -6.4082 -2.0117 28 1 -0.3558 -7.2644 -2.7634 29 1 -0.8310 -6.0019 -1.6122 30 1 -2.1178 -8.0233 -1.3685 31 1 -0.6275 -8.9277 -1.0427 32 1 -1.3657 -6.5121 0.6446 33 1 -2.0511 -8.1208 0.9949 34 1 0.5178 -8.8111 0.6688 35 1 -0.1603 -8.3268 2.2329 36 1 2.0665 -7.2361 1.5065 37 1 0.7937 -6.1693 2.1225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057526439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:03 Heat of formation + Delta-G solvation = 35.158555 kcal Electronic energy + Delta-G solvation = -18268.499059 eV Core-core repulsion = 15557.958407 eV Total energy + Delta-G solvation = -2710.540652 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13054 -38.68866 -33.83757 -32.50730 -32.40259 -29.67488 -28.65273 -25.52339 -24.99270 -24.37109 -21.19257 -20.94384 -20.26246 -19.09418 -17.77535 -16.79740 -15.58624 -15.09306 -14.80595 -14.42863 -14.18897 -13.95211 -13.87311 -13.36395 -13.11165 -12.96109 -12.65762 -12.28930 -12.12020 -11.35157 -11.07301 -11.03730 -10.93702 -10.91052 -10.75855 -10.48331 -10.44993 -10.36031 -10.06284 -9.32601 -9.05246 -8.83308 -8.71154 -8.29722 -6.44987 -6.32421 -4.02649 2.73383 2.84368 3.26475 3.30189 3.39440 3.63009 3.98809 4.13570 4.44632 4.61836 4.84422 4.96997 5.04072 5.10673 5.12037 5.13665 5.28678 5.35224 5.38364 5.61320 5.66804 5.76848 5.85265 5.90040 5.96985 6.04051 6.07741 6.10925 6.16058 6.22096 6.32203 6.36780 6.39765 7.00454 7.52462 7.72259 7.77597 8.53557 8.93071 9.20106 10.76615 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024495 B = 0.005750 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.802241 B = 4868.312703 C = 5551.575104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.929 3.071 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.103 0.897 9 S 0.093 5.907 10 C 0.206 3.794 11 N -0.499 5.499 12 C -0.026 4.026 13 C -0.087 4.087 14 N -0.456 5.456 15 C 0.142 3.858 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.111 4.111 21 C -0.125 4.125 22 H 0.270 0.730 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -16.522 -0.269 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.138 4.138 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.666 4.666 8 H 0.121 0.879 9 S 0.326 5.674 10 C -0.163 4.163 11 N -0.221 5.221 12 C -0.177 4.177 13 C -0.222 4.222 14 N -0.144 5.144 15 C 0.039 3.961 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.149 4.149 21 C -0.163 4.163 22 H 0.080 0.920 23 H 0.173 0.827 24 H 0.175 0.825 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.935 -15.834 -0.265 16.106 hybrid contribution 1.701 0.261 0.022 1.721 sum -1.233 -15.573 -0.242 15.624 Atomic orbital electron populations 1.69972 1.05974 1.27965 1.48009 1.25048 0.95159 0.99447 0.94119 0.85974 0.79557 0.80441 0.78504 1.20145 1.20861 1.19230 1.23140 0.97003 0.89058 1.57429 0.87911 1.83224 0.99097 0.96210 1.88867 1.26772 0.99688 0.85103 1.04696 1.70804 1.00266 1.28198 1.22827 1.22185 0.99009 0.88843 1.07652 1.22294 0.83963 0.99347 1.16636 1.45783 1.05776 1.05666 1.57166 1.21245 0.85839 0.93637 0.95425 1.21722 0.97640 0.99970 0.96781 1.20461 0.94736 1.00767 0.99775 1.20509 1.00246 0.99168 0.95477 1.21444 0.97271 1.02372 0.95187 1.21293 0.95298 0.97479 1.00836 1.22268 1.00023 0.97257 0.96787 0.91990 0.82718 0.82456 0.87998 0.91190 0.90754 0.91804 0.91219 0.92145 0.92309 0.91012 0.91775 0.92010 0.91930 0.91516 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.22 55.48 0.73 -24.77 16 2 C 0.07 1.98 5.49 -17.48 -0.10 1.89 16 3 Si 0.93 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -15.06 9.36 30.88 0.29 -14.77 16 8 H 0.10 3.09 6.89 -52.48 -0.36 2.73 16 9 S 0.09 2.43 20.85 -107.50 -2.24 0.18 16 10 C 0.21 4.89 7.95 -88.52 -0.70 4.19 16 11 N -0.50 -12.32 10.01 -13.39 -0.13 -12.46 16 12 C -0.03 -0.52 11.84 -17.84 -0.21 -0.73 16 13 C -0.09 -1.52 10.46 -16.34 -0.17 -1.69 16 14 N -0.46 -8.63 2.46 -110.52 -0.27 -8.90 16 15 C 0.14 2.13 2.32 -68.64 -0.16 1.97 16 16 C -0.12 -1.55 4.94 -27.34 -0.14 -1.68 16 17 C -0.12 -1.31 5.26 -29.60 -0.16 -1.47 16 18 C -0.12 -1.08 5.27 -29.60 -0.16 -1.24 16 19 C -0.13 -1.22 5.61 -27.31 -0.15 -1.37 16 20 C -0.11 -1.09 5.32 -27.40 -0.15 -1.23 16 21 C -0.12 -1.58 5.42 -25.62 -0.14 -1.72 16 22 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 24 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 25 H 0.10 1.69 5.62 -51.93 -0.29 1.40 16 26 H 0.07 0.76 6.98 -51.93 -0.36 0.40 16 27 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.86 7.46 -51.93 -0.39 0.48 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 7.46 -51.93 -0.39 0.11 16 32 H 0.07 0.81 6.97 -51.93 -0.36 0.44 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.84 7.46 -51.93 -0.39 0.45 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -31.80 305.20 -9.67 -41.47 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.39 Total: 0.79 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.94 Total: -17.87 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.33 Total: -46.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.24 Total: 0.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.80 -9.67 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057526439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.625 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds