Wall clock time and date at job start Mon Mar 30 2020 07:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31649 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48505 * 109.46955 * 269.99217 * 3 2 1 5 5 H 1.48492 * 109.47490 * 29.99571 * 3 2 1 6 6 H 1.48504 * 109.46990 * 149.99681 * 3 2 1 7 7 C 1.38641 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.76193 * 100.00178 * 179.97438 * 9 7 2 11 11 N 1.31390 * 125.81406 * 0.02765 * 10 9 7 12 12 C 1.34035 * 109.29727 * 179.97438 * 11 10 9 13 13 C 1.34714 * 108.35376 * 359.77145 * 12 11 10 14 14 N 1.36248 * 125.80975 * 179.97438 * 10 9 7 15 15 C 1.46504 * 126.50522 * 359.97438 * 14 10 9 16 16 C 1.50476 * 108.87622 * 119.99355 * 15 14 10 17 17 C 1.54245 * 108.51856 * 214.83364 * 16 15 14 18 18 C 1.45542 * 112.40792 * 280.00900 * 17 16 15 19 19 C 1.54245 * 112.32700 * 61.98392 * 18 17 16 20 20 C 1.50546 * 108.48390 * 279.88442 * 19 18 17 21 21 C 1.54056 * 108.79980 * 242.92466 * 15 14 10 22 22 H 0.96999 * 120.00066 * 0.02562 * 1 2 3 23 23 H 1.07998 * 125.82669 * 179.97438 * 12 11 10 24 24 H 1.08002 * 126.51616 * 180.22700 * 13 12 11 25 25 H 1.09005 * 108.84690 * 1.43743 * 15 14 10 26 26 H 1.09002 * 109.62685 * 95.12914 * 16 15 14 27 27 H 1.08995 * 109.63266 * 334.54507 * 16 15 14 28 28 H 1.08997 * 108.89530 * 159.25760 * 17 16 15 29 29 H 1.09001 * 108.81525 * 40.70995 * 17 16 15 30 30 H 1.09002 * 108.89596 * 182.69054 * 18 17 16 31 31 H 1.09003 * 108.89788 * 301.28088 * 18 17 16 32 32 H 1.09000 * 109.62486 * 39.68278 * 19 18 17 33 33 H 1.08999 * 109.63051 * 160.25691 * 19 18 17 34 34 H 1.09000 * 108.92627 * 333.51136 * 20 19 18 35 35 H 1.09003 * 108.91864 * 215.01792 * 20 19 18 36 36 H 1.09000 * 108.81295 * 318.41563 * 21 15 14 37 37 H 1.08999 * 108.81700 * 76.69692 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4981 2.0464 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5480 1.4403 0.7001 7 6 2.0097 -1.2006 0.0005 8 1 3.0898 -1.2007 0.0010 9 16 1.1288 -2.7267 0.0005 10 6 2.4786 -3.8592 0.0005 11 7 3.7524 -3.5371 0.0011 12 6 4.4919 -4.6550 0.0014 13 6 3.6595 -5.7143 0.0063 14 7 2.3791 -5.2180 0.0010 15 6 1.1410 -6.0012 0.0022 16 6 1.1092 -6.8634 -1.2307 17 6 -0.3518 -6.9759 -1.7123 18 6 -1.1129 -7.9560 -0.9517 19 6 -1.2155 -7.5869 0.5424 20 6 0.0666 -7.9875 1.2222 21 6 1.0772 -6.8272 1.3010 22 1 -0.4850 0.8400 -0.0004 23 1 5.5710 -4.6992 0.0015 24 1 3.9450 -6.7559 0.0112 25 1 0.2920 -5.3180 -0.0233 26 1 1.4940 -7.8554 -0.9938 27 1 1.7181 -6.4082 -2.0117 28 1 -0.3558 -7.2644 -2.7634 29 1 -0.8310 -6.0019 -1.6122 30 1 -2.1178 -8.0233 -1.3685 31 1 -0.6275 -8.9277 -1.0427 32 1 -1.3657 -6.5121 0.6446 33 1 -2.0511 -8.1208 0.9949 34 1 0.5178 -8.8111 0.6688 35 1 -0.1603 -8.3268 2.2329 36 1 2.0665 -7.2361 1.5065 37 1 0.7937 -6.1693 2.1225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057526439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:02 Heat of formation + Delta-G solvation = 17.609854 kcal Electronic energy + Delta-G solvation = -18269.260027 eV Core-core repulsion = 15557.958407 eV Total energy + Delta-G solvation = -2711.301621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.68378 -39.71326 -35.10821 -34.64880 -33.29680 -30.97200 -30.24100 -27.70996 -25.92467 -25.46425 -22.54244 -22.52050 -21.25236 -20.44271 -19.48517 -18.34254 -16.92153 -16.70850 -16.36941 -15.74817 -15.47944 -15.24165 -14.97126 -14.77927 -14.62949 -14.08683 -13.99183 -13.28196 -13.23185 -13.11634 -12.96866 -12.86781 -12.36175 -12.01018 -11.96869 -11.62117 -11.44055 -11.33878 -11.28689 -11.18431 -10.89181 -10.62493 -10.41368 -10.06441 -8.46059 -8.38308 -6.20036 1.04823 1.16160 1.37292 1.39993 1.53449 2.12130 2.19710 2.31108 2.93368 3.12949 3.42800 3.70505 3.88789 4.00869 4.10857 4.16092 4.23563 4.29019 4.39360 4.50939 4.52885 4.73247 4.80247 4.87224 4.94343 5.04271 5.11214 5.21749 5.28878 5.33423 5.34567 5.44367 5.48841 5.54365 5.56681 5.95948 6.26739 6.29186 7.01185 7.28661 8.64091 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024495 B = 0.005750 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.802241 B = 4868.312703 C = 5551.575104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.996 3.004 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.083 0.917 9 S 0.059 5.941 10 C 0.170 3.830 11 N -0.540 5.540 12 C -0.058 4.058 13 C -0.050 4.050 14 N -0.445 5.445 15 C 0.135 3.865 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.104 4.104 21 C -0.119 4.119 22 H 0.277 0.723 23 H 0.184 0.816 24 H 0.211 0.789 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -19.154 -0.317 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.818 3.182 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.291 5.709 10 C -0.199 4.199 11 N -0.262 5.262 12 C -0.208 4.208 13 C -0.186 4.186 14 N -0.131 5.131 15 C 0.034 3.966 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.166 4.166 20 C -0.141 4.141 21 C -0.157 4.157 22 H 0.086 0.914 23 H 0.201 0.799 24 H 0.228 0.772 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.378 -18.497 -0.314 18.652 hybrid contribution 1.582 0.907 0.037 1.824 sum -0.796 -17.590 -0.277 17.610 Atomic orbital electron populations 1.70051 1.07210 1.29170 1.48242 1.25963 0.96113 1.02733 0.93334 0.84987 0.78055 0.76204 0.78962 1.19124 1.19092 1.19575 1.23246 0.96400 0.91009 1.58511 0.89906 1.82908 1.01092 0.96274 1.90623 1.26147 0.98750 0.86694 1.08333 1.70663 1.01287 1.31219 1.23078 1.22773 1.00629 0.88248 1.09179 1.23084 0.82479 1.01110 1.11890 1.46095 1.07757 1.04356 1.54857 1.21597 0.83378 0.93443 0.98222 1.21686 0.98544 1.00448 0.94610 1.20453 0.93769 1.00201 1.00959 1.20493 1.00674 0.99300 0.94662 1.21472 0.98112 1.01028 0.95945 1.21282 0.94331 0.96415 1.02115 1.22251 1.01595 0.97557 0.94296 0.91380 0.79942 0.77226 0.90545 0.88188 0.92750 0.90518 0.93783 0.91249 0.90160 0.93575 0.90058 0.89843 0.90564 0.90546 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.00 13.22 21.62 0.29 -53.72 16 2 C 0.02 1.37 5.49 84.82 0.47 1.83 16 3 Si 1.00 45.94 29.55 68.60 2.03 47.97 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -33.11 9.36 67.92 0.64 -32.47 16 8 H 0.08 5.24 6.89 -2.91 -0.02 5.22 16 9 S 0.06 3.24 20.85 -56.49 -1.18 2.06 16 10 C 0.17 8.36 7.95 179.61 1.43 9.78 16 11 N -0.54 -27.30 10.01 -196.28 -1.97 -29.26 16 12 C -0.06 -2.27 11.84 83.55 0.99 -1.28 16 13 C -0.05 -1.61 10.46 83.02 0.87 -0.74 16 14 N -0.44 -16.63 2.46 -503.59 -1.24 -17.87 16 15 C 0.14 3.99 2.32 44.53 0.10 4.09 16 16 C -0.11 -2.65 4.94 30.20 0.15 -2.50 16 17 C -0.12 -2.38 5.26 28.74 0.15 -2.23 16 18 C -0.11 -1.79 5.27 28.74 0.15 -1.64 16 19 C -0.13 -2.22 5.61 30.22 0.17 -2.05 16 20 C -0.10 -1.69 5.32 30.16 0.16 -1.53 16 21 C -0.12 -2.79 5.42 31.31 0.17 -2.62 16 22 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.18 5.76 8.06 -2.91 -0.02 5.73 16 24 H 0.21 4.48 8.06 -2.91 -0.02 4.46 16 25 H 0.08 2.67 5.62 -2.38 -0.01 2.66 16 26 H 0.10 1.72 6.98 -2.39 -0.02 1.71 16 27 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.12 7.46 -2.39 -0.02 1.11 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.97 7.46 -2.39 -0.02 0.95 16 32 H 0.05 1.04 6.97 -2.39 -0.02 1.02 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.05 6.63 -2.39 -0.02 1.04 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.65 7.46 -2.39 -0.02 1.63 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.00 305.20 4.42 -68.58 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.05 Total: 13.59 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 5.44 Total: -31.34 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -2.92 Total: -100.85 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.18 Total: 2.06 kcal Total: -73.00 4.42 -68.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057526439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.187 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds