Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47094 * 180.02562 * 10 9 8 12 12 S 1.81004 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.76192 * 99.99897 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.38804 * 120.00059 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99588 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46966 * 90.00107 * 17 15 13 19 19 H 1.48499 * 109.47139 * 210.00167 * 17 15 13 20 20 H 1.48500 * 109.47138 * 329.99923 * 17 15 13 21 21 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 25 25 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 27 27 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 28 28 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 29 29 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 30 30 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 31 31 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 32 32 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 33 33 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 34 34 H 1.08998 * 109.46817 * 299.99808 * 11 10 9 35 35 H 1.08994 * 109.47195 * 60.00080 * 11 10 9 36 36 H 0.97007 * 119.99435 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.03255 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 6 8.3942 -5.0386 -0.0252 12 16 10.2016 -4.9412 -0.0249 13 6 10.6004 -6.6574 -0.0332 14 1 9.8116 -7.3952 -0.0370 15 6 11.9284 -7.0613 -0.0358 16 7 12.8897 -6.1622 -0.0316 17 14 12.3512 -8.8808 -0.0452 18 1 12.4627 -9.3558 -1.4479 19 1 13.6445 -9.0921 0.6532 20 1 11.2825 -9.6410 0.6514 21 6 2.1970 -1.1966 -0.0058 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6565 2.1324 -0.0004 26 1 4.1176 2.1381 0.0098 27 1 5.3552 0.0102 0.0002 28 1 6.0278 -1.7576 -0.8990 29 1 6.0280 -1.7669 0.8810 30 1 5.9445 -4.2448 0.8688 31 1 5.9443 -4.2363 -0.9111 32 1 8.1428 -3.0886 -0.9050 33 1 8.1423 -3.0974 0.8749 34 1 8.0588 -5.5759 0.8618 35 1 8.0593 -5.5663 -0.9181 36 1 13.8178 -6.4445 -0.0337 37 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058254596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = -46.078982 kcal Electronic energy + Delta-G solvation = -16392.297907 eV Core-core repulsion = 13645.941780 eV Total energy + Delta-G solvation = -2746.356127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29602 -37.94795 -34.85998 -32.73664 -32.43680 -30.68157 -28.73880 -27.20734 -25.61370 -23.75231 -22.75213 -21.19238 -20.80364 -17.89107 -17.43186 -16.37827 -16.24696 -16.08224 -14.81110 -14.70779 -14.50960 -14.39473 -13.90462 -13.64317 -13.41760 -13.05136 -12.75009 -12.48083 -12.12448 -11.88587 -11.79290 -11.63623 -11.31506 -11.08207 -10.93846 -10.85517 -10.70320 -10.64797 -10.36348 -9.56336 -9.06458 -9.00880 -8.34500 -8.32491 -6.54479 -6.23580 -3.94088 1.10214 1.26397 3.01220 3.21774 3.23859 3.29403 3.54875 3.61105 4.21833 4.56654 4.59684 4.84921 4.90042 4.92250 5.00829 5.11312 5.12609 5.20993 5.28539 5.30098 5.37335 5.47755 5.48613 5.57269 5.73330 5.79236 5.86148 6.00473 6.12626 6.15990 6.23813 6.31353 6.36306 6.54190 6.60061 6.71040 7.31491 7.60205 8.36209 9.22833 10.84639 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.065390 B = 0.002429 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.097723 B =11524.152309 C =11915.895563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.165 4.165 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.139 3.861 7 O -0.316 6.316 8 C 0.060 3.940 9 C -0.114 4.114 10 C -0.095 4.095 11 C -0.113 4.113 12 S -0.136 6.136 13 C -0.515 4.515 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.870 5.870 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.158 4.158 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.267 0.733 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.349 13.309 0.084 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.183 4.183 4 C -0.094 4.094 5 C -0.234 4.234 6 C 0.093 3.907 7 O -0.229 6.229 8 C -0.015 4.015 9 C -0.153 4.153 10 C -0.133 4.133 11 C -0.261 4.261 12 S 0.092 5.908 13 C -0.664 4.664 14 H 0.091 0.909 15 C -0.139 4.139 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.176 4.176 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.512 14.029 0.091 24.850 hybrid contribution -0.178 -2.027 -0.012 2.035 sum -20.690 12.002 0.079 23.919 Atomic orbital electron populations 1.20806 0.90841 1.02925 1.02522 1.19699 0.95986 0.92322 0.97070 1.20915 0.94174 0.97455 1.05761 1.20939 0.94156 0.97440 0.96889 1.21324 1.00581 0.92271 1.09268 1.19046 0.91779 0.84963 0.94903 1.86076 1.20844 1.27916 1.88080 1.22959 0.77195 0.99819 1.01532 1.21604 0.95790 0.94244 1.03660 1.21194 0.92010 0.97246 1.02896 1.23249 1.01911 0.97901 1.03064 1.84598 0.96120 1.13164 1.96877 1.22685 0.94727 0.90495 1.58462 0.90910 1.25030 0.95344 0.98897 0.94606 1.70028 0.99872 1.33374 1.47275 0.86151 0.77938 0.82980 0.78374 1.20260 1.20755 1.19672 1.20305 0.90987 0.98602 1.07730 0.90930 0.91358 0.91339 0.86109 0.85814 0.85287 0.91839 0.91846 0.90900 0.90896 0.91316 0.91308 0.91986 0.91992 0.92312 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.05 -0.47 5.88 -104.64 -0.62 -1.09 16 3 C -0.16 -1.47 9.70 -39.56 -0.38 -1.86 16 4 C -0.08 -0.72 10.04 -39.61 -0.40 -1.11 16 5 C -0.22 -2.34 9.04 -39.44 -0.36 -2.70 16 6 C 0.14 1.69 6.69 -39.22 -0.26 1.43 16 7 O -0.32 -4.15 10.14 -19.45 -0.20 -4.35 16 8 C 0.06 0.71 4.74 37.15 0.18 0.89 16 9 C -0.11 -1.50 5.58 -26.74 -0.15 -1.65 16 10 C -0.09 -1.49 5.22 -26.73 -0.14 -1.63 16 11 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 12 S -0.14 -3.56 21.44 -107.50 -2.30 -5.86 16 13 C -0.52 -14.85 9.50 30.94 0.29 -14.56 16 14 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 15 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 16 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 17 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 C -0.16 -1.72 9.64 -39.43 -0.38 -2.10 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 24 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 25 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 26 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 27 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 28 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.06 0.70 7.66 -51.92 -0.40 0.30 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -31.65 327.94 -9.33 -40.97 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.74 Total: -2.09 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.74 Total: -24.89 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.73 Total: -25.31 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.20 Total: -4.35 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.65 -9.33 -40.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.105 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds