Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47094 * 180.02562 * 10 9 8 12 12 S 1.81004 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.76192 * 99.99897 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.38804 * 120.00059 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99588 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46966 * 90.00107 * 17 15 13 19 19 H 1.48499 * 109.47139 * 210.00167 * 17 15 13 20 20 H 1.48500 * 109.47138 * 329.99923 * 17 15 13 21 21 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 25 25 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 27 27 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 28 28 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 29 29 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 30 30 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 31 31 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 32 32 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 33 33 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 34 34 H 1.08998 * 109.46817 * 299.99808 * 11 10 9 35 35 H 1.08994 * 109.47195 * 60.00080 * 11 10 9 36 36 H 0.97007 * 119.99435 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.03255 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 6 8.3942 -5.0386 -0.0252 12 16 10.2016 -4.9412 -0.0249 13 6 10.6004 -6.6574 -0.0332 14 1 9.8116 -7.3952 -0.0370 15 6 11.9284 -7.0613 -0.0358 16 7 12.8897 -6.1622 -0.0316 17 14 12.3512 -8.8808 -0.0452 18 1 12.4627 -9.3558 -1.4479 19 1 13.6445 -9.0921 0.6532 20 1 11.2825 -9.6410 0.6514 21 6 2.1970 -1.1966 -0.0058 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6565 2.1324 -0.0004 26 1 4.1176 2.1381 0.0098 27 1 5.3552 0.0102 0.0002 28 1 6.0278 -1.7576 -0.8990 29 1 6.0280 -1.7669 0.8810 30 1 5.9445 -4.2448 0.8688 31 1 5.9443 -4.2363 -0.9111 32 1 8.1428 -3.0886 -0.9050 33 1 8.1423 -3.0974 0.8749 34 1 8.0588 -5.5759 0.8618 35 1 8.0593 -5.5663 -0.9181 36 1 13.8178 -6.4445 -0.0337 37 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058254596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = -62.500323 kcal Electronic energy + Delta-G solvation = -16393.009990 eV Core-core repulsion = 13645.941780 eV Total energy + Delta-G solvation = -2747.068210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11223 -38.76792 -36.09265 -34.61295 -33.40064 -31.60386 -29.86715 -27.88250 -27.73698 -24.93438 -23.51926 -22.34345 -21.70219 -19.58333 -18.66353 -17.37890 -17.07482 -16.90554 -16.86705 -16.17164 -15.93343 -15.21961 -14.85591 -14.58057 -14.57850 -14.14024 -13.81387 -13.63631 -13.32246 -13.04728 -12.96146 -12.86997 -12.70560 -12.49322 -12.34544 -12.20816 -11.92735 -11.66959 -11.49244 -11.42294 -11.15366 -10.34422 -9.73614 -9.14243 -8.68150 -8.38719 -6.14991 0.36554 0.49506 1.30638 1.38818 1.47887 1.70384 2.20359 2.30032 2.80297 2.95516 3.30237 3.77712 3.86960 3.91148 3.97755 4.17620 4.20399 4.23356 4.28447 4.43204 4.49666 4.56507 4.59146 4.71393 4.76426 4.84881 4.88010 4.97467 5.04347 5.21115 5.25023 5.31244 5.38791 5.38969 5.50883 5.65972 5.88910 6.16990 6.46300 7.03613 8.70648 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.065390 B = 0.002429 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.097723 B =11524.152309 C =11915.895563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 C -0.167 4.167 4 C -0.081 4.081 5 C -0.229 4.229 6 C 0.112 3.888 7 O -0.333 6.333 8 C 0.064 3.936 9 C -0.103 4.103 10 C -0.084 4.084 11 C -0.090 4.090 12 S -0.198 6.198 13 C -0.539 4.539 14 H 0.072 0.928 15 C 0.014 3.986 16 N -0.907 5.907 17 Si 0.995 3.005 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.264 1.264 21 C -0.175 4.175 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.272 0.728 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.846 13.671 0.076 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.099 4.099 5 C -0.248 4.248 6 C 0.067 3.933 7 O -0.247 6.247 8 C -0.011 4.011 9 C -0.142 4.142 10 C -0.123 4.123 11 C -0.239 4.239 12 S 0.031 5.969 13 C -0.687 4.687 14 H 0.090 0.910 15 C -0.191 4.191 16 N -0.543 5.543 17 Si 0.817 3.183 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.188 1.188 21 C -0.193 4.193 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.164 0.836 26 H 0.164 0.836 27 H 0.153 0.847 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.022 14.404 0.082 26.314 hybrid contribution 0.177 -2.041 -0.008 2.048 sum -21.845 12.363 0.074 25.101 Atomic orbital electron populations 1.20868 0.88789 1.03911 1.03398 1.20079 0.97568 0.91881 0.95963 1.21296 0.94251 0.98390 1.04534 1.21282 0.94712 0.97840 0.96095 1.21502 1.01069 0.92468 1.09716 1.19323 0.92367 0.85032 0.96554 1.86015 1.21123 1.28897 1.88663 1.22861 0.77079 0.98780 1.02386 1.21419 0.93658 0.95406 1.03755 1.21091 0.93585 0.94342 1.03290 1.23212 0.96815 1.00840 1.03066 1.84571 1.02303 1.13021 1.97048 1.23041 0.95350 0.91399 1.58888 0.90962 1.26088 0.95071 1.04173 0.93768 1.70155 1.00374 1.35832 1.47946 0.85004 0.77959 0.76523 0.78850 1.19250 1.19849 1.18780 1.20533 0.90833 0.99550 1.08433 0.89979 0.89805 0.90981 0.83597 0.83587 0.84748 0.91020 0.91028 0.90835 0.90825 0.90971 0.90966 0.91913 0.91893 0.91939 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 2 C -0.05 -0.93 5.88 -19.88 -0.12 -1.05 16 3 C -0.17 -2.61 9.70 22.28 0.22 -2.39 16 4 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 5 C -0.23 -4.76 9.04 22.36 0.20 -4.56 16 6 C 0.11 2.69 6.69 22.51 0.15 2.84 16 7 O -0.33 -8.65 10.14 -92.52 -0.94 -9.58 16 8 C 0.06 1.46 4.74 71.98 0.34 1.80 16 9 C -0.10 -2.61 5.58 30.59 0.17 -2.44 16 10 C -0.08 -2.58 5.22 30.59 0.16 -2.42 16 11 C -0.09 -3.61 5.67 71.98 0.41 -3.21 16 12 S -0.20 -10.57 21.44 -56.49 -1.21 -11.78 16 13 C -0.54 -31.39 9.50 67.96 0.65 -30.74 16 14 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 15 C 0.01 0.80 5.49 84.86 0.47 1.26 16 16 N -0.91 -54.92 13.22 21.65 0.29 -54.64 16 17 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 C -0.17 -3.73 9.64 22.37 0.22 -3.51 16 22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 24 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 25 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 26 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 27 H 0.13 2.51 6.30 -2.91 -0.02 2.49 16 28 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 29 H 0.07 1.50 7.66 -2.38 -0.02 1.48 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 35 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 36 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 37 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -68.40 327.94 4.99 -63.42 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.03 Total: 12.44 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 3.80 Total: -46.06 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.29 Total: -54.64 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.94 Total: -9.58 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.21 Total: -11.78 kcal Total: -68.40 4.99 -63.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058254596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.916 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds