Wall clock time and date at job start Mon Mar 30 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48495 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47091 * 299.99878 * 3 2 1 6 6 H 1.48499 * 109.47365 * 59.99787 * 3 2 1 7 7 C 1.37874 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99316 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00448 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00204 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47472 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47181 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.97008 * 119.99656 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47167 * 59.99636 * 9 7 2 24 24 H 1.09002 * 109.47288 * 299.99998 * 9 7 2 25 25 H 1.09004 * 109.47152 * 59.99545 * 11 10 9 26 26 H 1.09009 * 109.47390 * 300.00015 * 11 10 9 27 27 H 1.08999 * 109.46920 * 59.99808 * 12 11 10 28 28 H 1.08993 * 109.46801 * 299.99991 * 12 11 10 29 29 H 1.08999 * 109.47370 * 60.00060 * 13 12 11 30 30 H 1.09006 * 109.47017 * 299.99902 * 13 12 11 31 31 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 32 32 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 33 33 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 34 34 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 36 36 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4296 -3.8780 0.0005 11 6 1.3513 -5.3367 0.0013 12 6 2.2081 -6.6043 0.0020 13 6 1.2986 -7.8346 0.0021 14 6 2.1553 -9.1022 0.0034 15 8 1.3058 -10.2513 0.0029 16 6 1.9128 -11.4672 0.0045 17 6 1.1488 -12.6252 0.0046 18 6 1.7681 -13.8600 0.0057 19 6 3.1483 -13.9424 0.0072 20 6 3.9121 -12.7899 0.0067 21 6 3.2975 -11.5527 0.0056 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 0.7218 -5.3236 -0.8884 26 1 0.7224 -5.3232 0.8916 27 1 2.8372 -6.6171 0.8920 28 1 2.8372 -6.6181 -0.8879 29 1 0.6697 -7.8216 -0.8881 30 1 0.6690 -7.8210 0.8919 31 1 2.7838 -9.1150 0.8939 32 1 2.7852 -9.1160 -0.8860 33 1 0.0706 -12.5613 0.0081 34 1 1.1738 -14.7618 0.0061 35 1 3.6306 -14.9087 0.0085 36 1 4.9899 -12.8568 0.0075 37 1 3.8944 -10.6526 0.0056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:05 Heat of formation + Delta-G solvation = -42.049033 kcal Electronic energy + Delta-G solvation = -16206.731659 eV Core-core repulsion = 13460.550284 eV Total energy + Delta-G solvation = -2746.181375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32824 -37.79073 -35.10691 -33.14626 -31.35554 -30.47009 -28.97830 -28.50648 -24.50874 -23.17540 -22.72691 -21.87649 -21.04495 -18.44151 -16.56079 -16.55280 -16.32549 -16.00490 -15.28227 -14.97757 -14.76141 -14.48171 -13.83216 -13.66691 -13.32951 -13.13474 -12.57827 -12.45820 -12.30281 -11.95658 -11.92129 -11.58856 -11.42004 -11.10205 -10.96614 -10.89238 -10.62000 -10.60646 -9.89743 -9.51801 -9.30387 -8.86563 -8.62295 -8.46878 -6.69806 -6.19715 -4.23726 1.04118 1.16795 2.57875 3.02745 3.24769 3.31912 3.38453 3.50742 3.88190 4.35357 4.50779 4.58699 4.71415 4.75241 4.83538 5.03280 5.09564 5.10256 5.17435 5.18850 5.28900 5.45075 5.48263 5.68313 5.70914 5.80784 5.95379 6.04527 6.11934 6.18565 6.23510 6.30833 6.49857 7.09764 7.11538 7.19067 7.75265 8.01401 8.78498 9.39313 10.91691 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.078292 B = 0.002250 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.549437 B =12439.333224 C =12760.530422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.093 3.907 10 S -0.315 6.315 11 C -0.087 4.087 12 C -0.095 4.095 13 C -0.115 4.115 14 C 0.060 3.940 15 O -0.315 6.315 16 C 0.134 3.866 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.164 4.164 20 C -0.080 4.080 21 C -0.210 4.210 22 H 0.265 0.735 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.875 -25.555 0.016 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.086 0.914 9 C -0.054 4.054 10 S -0.088 6.088 11 C -0.236 4.236 12 C -0.134 4.134 13 C -0.154 4.154 14 C -0.015 4.015 15 O -0.229 6.229 16 C 0.088 3.912 17 C -0.175 4.175 18 C -0.100 4.100 19 C -0.182 4.182 20 C -0.098 4.098 21 C -0.229 4.229 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.613 -25.328 0.015 25.745 hybrid contribution -0.776 0.956 0.002 1.231 sum 3.837 -24.372 0.017 24.673 Atomic orbital electron populations 1.69970 1.06145 1.27213 1.49829 1.24985 0.94995 0.99337 0.94706 0.86286 0.80081 0.82511 0.77722 1.19414 1.20734 1.20739 1.20739 0.93517 0.88776 1.52036 0.91410 1.21029 0.93551 0.90796 1.00023 1.86578 1.21643 1.02549 1.98079 1.23160 1.00435 0.95775 1.04204 1.21190 0.97564 0.91255 1.03372 1.21575 0.98657 0.91176 1.03987 1.22906 0.93411 0.83574 1.01599 1.86072 1.36452 1.12174 1.88189 1.19080 0.91263 0.85518 0.95342 1.20486 1.00258 0.90086 1.06627 1.20972 0.94739 0.96734 0.97572 1.21063 0.94007 0.98455 1.04692 1.20974 0.99896 0.91866 0.97111 1.21339 0.93562 0.99303 1.08709 0.92565 0.94659 0.94653 0.90861 0.90867 0.90952 0.90961 0.90625 0.90633 0.91797 0.91806 0.85227 0.85460 0.86019 0.85823 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.58 9.13 -34.45 -0.31 -14.89 16 8 H 0.07 1.93 7.71 -52.48 -0.40 1.53 16 9 C 0.09 2.44 5.70 36.00 0.21 2.65 16 10 S -0.32 -6.87 21.66 -107.50 -2.33 -9.20 16 11 C -0.09 -1.44 5.94 37.16 0.22 -1.22 16 12 C -0.10 -1.22 5.22 -26.73 -0.14 -1.36 16 13 C -0.11 -1.25 5.58 -26.73 -0.15 -1.40 16 14 C 0.06 0.60 4.74 37.16 0.18 0.78 16 15 O -0.32 -3.69 10.14 -19.42 -0.20 -3.88 16 16 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 17 C -0.16 -1.50 9.99 -39.43 -0.39 -1.90 16 18 C -0.08 -0.66 10.04 -39.61 -0.40 -1.05 16 19 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 20 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 21 C -0.21 -2.02 9.04 -39.44 -0.36 -2.38 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 26 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -30.52 328.56 -9.90 -40.42 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.74 Total: -2.71 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.30 Total: -20.61 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -6.87 SS G_CDS: -2.33 Total: -9.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.52 -9.90 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.631 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds