Wall clock time and date at job start Mon Mar 30 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48495 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47091 * 299.99878 * 3 2 1 6 6 H 1.48499 * 109.47365 * 59.99787 * 3 2 1 7 7 C 1.37874 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99316 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00448 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.81399 * 103.00204 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47472 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47181 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47181 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47386 * 180.02562 * 14 13 12 16 16 C 1.35898 * 116.99694 * 180.02562 * 15 14 13 17 17 C 1.38735 * 120.05254 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.94607 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05233 * 0.02562 * 18 17 16 20 20 C 1.38269 * 120.11595 * 359.95530 * 19 18 17 21 21 C 1.38142 * 120.04935 * 0.04230 * 20 19 18 22 22 H 0.97008 * 119.99656 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47167 * 59.99636 * 9 7 2 24 24 H 1.09002 * 109.47288 * 299.99998 * 9 7 2 25 25 H 1.09004 * 109.47152 * 59.99545 * 11 10 9 26 26 H 1.09009 * 109.47390 * 300.00015 * 11 10 9 27 27 H 1.08999 * 109.46920 * 59.99808 * 12 11 10 28 28 H 1.08993 * 109.46801 * 299.99991 * 12 11 10 29 29 H 1.08999 * 109.47370 * 60.00060 * 13 12 11 30 30 H 1.09006 * 109.47017 * 299.99902 * 13 12 11 31 31 H 1.08999 * 109.46920 * 59.99785 * 14 13 12 32 32 H 1.08998 * 109.47220 * 300.00155 * 14 13 12 33 33 H 1.08002 * 120.02704 * 359.70561 * 17 16 15 34 34 H 1.08001 * 119.97447 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.94089 * 179.97438 * 19 18 17 36 36 H 1.07992 * 119.97577 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.02748 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4296 -3.8780 0.0005 11 6 1.3513 -5.3367 0.0013 12 6 2.2081 -6.6043 0.0020 13 6 1.2986 -7.8346 0.0021 14 6 2.1553 -9.1022 0.0034 15 8 1.3058 -10.2513 0.0029 16 6 1.9128 -11.4672 0.0045 17 6 1.1488 -12.6252 0.0046 18 6 1.7681 -13.8600 0.0057 19 6 3.1483 -13.9424 0.0072 20 6 3.9121 -12.7899 0.0067 21 6 3.2975 -11.5527 0.0056 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 0.7218 -5.3236 -0.8884 26 1 0.7224 -5.3232 0.8916 27 1 2.8372 -6.6171 0.8920 28 1 2.8372 -6.6181 -0.8879 29 1 0.6697 -7.8216 -0.8881 30 1 0.6690 -7.8210 0.8919 31 1 2.7838 -9.1150 0.8939 32 1 2.7852 -9.1160 -0.8860 33 1 0.0706 -12.5613 0.0081 34 1 1.1738 -14.7618 0.0061 35 1 3.6306 -14.9087 0.0085 36 1 4.9899 -12.8568 0.0075 37 1 3.8944 -10.6526 0.0056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058256579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:05 Heat of formation + Delta-G solvation = -57.172750 kcal Electronic energy + Delta-G solvation = -16207.387473 eV Core-core repulsion = 13460.550284 eV Total energy + Delta-G solvation = -2746.837189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04013 -38.49858 -36.13111 -35.30813 -32.01877 -31.26053 -30.69561 -29.85152 -25.71045 -24.90706 -23.51657 -22.70086 -21.99113 -19.16336 -18.65440 -17.40405 -17.27281 -16.94491 -16.68814 -16.31958 -16.06141 -15.34803 -14.76788 -14.65378 -14.58089 -14.45633 -14.30918 -13.95981 -13.44106 -13.18026 -13.06629 -12.76291 -12.51981 -12.43748 -12.28377 -12.01746 -11.82765 -11.67177 -11.52352 -11.42771 -10.76952 -10.71710 -9.94371 -9.16360 -8.49452 -8.35142 -6.48554 0.40216 0.50235 0.99310 1.39437 1.39571 1.54760 2.02478 2.21907 2.35828 2.85994 2.99327 3.72108 3.82584 3.92044 4.01211 4.11552 4.19808 4.24997 4.29736 4.47596 4.51538 4.57545 4.62844 4.63894 4.79120 4.90816 4.92084 4.92727 5.10062 5.15607 5.25524 5.38730 5.49720 5.55609 5.61459 5.86967 5.88533 6.46265 6.59338 7.19712 8.77176 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.078292 B = 0.002250 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.549437 B =12439.333224 C =12760.530422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.093 3.907 10 S -0.323 6.323 11 C -0.076 4.076 12 C -0.085 4.085 13 C -0.105 4.105 14 C 0.062 3.938 15 O -0.333 6.333 16 C 0.107 3.893 17 C -0.173 4.173 18 C -0.084 4.084 19 C -0.165 4.165 20 C -0.088 4.088 21 C -0.222 4.222 22 H 0.271 0.729 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -26.835 0.017 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.081 0.919 9 C -0.054 4.054 10 S -0.096 6.096 11 C -0.225 4.225 12 C -0.123 4.123 13 C -0.145 4.145 14 C -0.013 4.013 15 O -0.248 6.248 16 C 0.062 3.938 17 C -0.192 4.192 18 C -0.102 4.102 19 C -0.183 4.183 20 C -0.106 4.106 21 C -0.241 4.241 22 H 0.079 0.921 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.843 -26.619 0.017 27.253 hybrid contribution -1.180 1.185 0.001 1.673 sum 4.663 -25.434 0.018 25.858 Atomic orbital electron populations 1.70072 1.07721 1.28541 1.50155 1.25966 0.95937 1.03216 0.93791 0.85183 0.78741 0.77611 0.78230 1.18853 1.19738 1.19748 1.21052 0.93472 0.90256 1.52761 0.91927 1.20723 0.94027 0.92863 0.97831 1.86371 1.21834 1.03309 1.98064 1.23309 1.00114 0.94398 1.04648 1.21101 0.97333 0.89957 1.03953 1.21422 0.98290 0.90720 1.04038 1.22867 0.93112 0.82838 1.02472 1.86017 1.37246 1.12793 1.88718 1.19360 0.92097 0.85415 0.96940 1.20734 1.00646 0.90592 1.07191 1.21317 0.95332 0.96980 0.96572 1.21446 0.94037 0.99469 1.03399 1.21317 1.01186 0.91579 0.96476 1.21530 0.93238 1.00335 1.08978 0.92058 0.96831 0.96824 0.90467 0.90472 0.90396 0.90407 0.90621 0.90629 0.90941 0.90954 0.84990 0.83024 0.83539 0.83731 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.18 9.13 25.60 0.23 -30.95 16 8 H 0.06 3.62 7.71 -2.91 -0.02 3.60 16 9 C 0.09 5.05 5.70 71.23 0.41 5.45 16 10 S -0.32 -14.11 21.66 -56.49 -1.22 -15.34 16 11 C -0.08 -2.46 5.94 71.98 0.43 -2.03 16 12 C -0.08 -2.03 5.22 30.59 0.16 -1.87 16 13 C -0.11 -2.15 5.58 30.59 0.17 -1.97 16 14 C 0.06 1.17 4.74 71.98 0.34 1.51 16 15 O -0.33 -7.62 10.14 -92.40 -0.94 -8.56 16 16 C 0.11 2.26 6.69 22.51 0.15 2.41 16 17 C -0.17 -3.21 9.99 22.37 0.22 -2.99 16 18 C -0.08 -1.19 10.04 22.25 0.22 -0.97 16 19 C -0.17 -2.18 10.04 22.28 0.22 -1.96 16 20 C -0.09 -1.28 10.04 22.25 0.22 -1.06 16 21 C -0.22 -4.01 9.04 22.36 0.20 -3.81 16 22 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 23 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 32 H 0.07 1.22 7.66 -2.39 -0.02 1.21 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.14 2.11 6.30 -2.91 -0.02 2.09 16 Total: -1.00 -66.09 328.56 4.62 -61.47 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.02 Total: 8.25 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.45 Total: -37.12 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.28 Total: -54.76 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.94 Total: -8.56 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -14.11 SS G_CDS: -1.22 Total: -15.34 kcal Total: -66.09 4.62 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.296 kcal (2) G-P(sol) polarization free energy of solvation -66.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds