Wall clock time and date at job start Mon Mar 30 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47337 * 2 1 4 4 O 1.42896 * 109.47078 * 239.99708 * 2 1 3 5 5 C 1.50703 * 109.47454 * 120.00091 * 2 1 3 6 6 C 1.38306 * 119.91846 * 265.00452 * 5 2 1 7 7 C 1.38079 * 120.08472 * 179.97438 * 6 5 2 8 8 C 1.38981 * 119.91476 * 0.02562 * 7 6 5 9 9 S 1.76195 * 120.07741 * 179.97438 * 8 7 6 10 10 C 1.81399 * 102.99929 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46946 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99734 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00111 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99915 * 17 15 13 19 19 H 1.48503 * 109.46827 * 209.99661 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99749 * 17 15 13 21 21 C 1.38979 * 119.84021 * 0.27667 * 8 7 6 22 22 C 1.38081 * 119.91731 * 359.40196 * 21 8 7 23 23 H 1.09001 * 109.46590 * 300.00239 * 1 2 3 24 24 H 1.08997 * 109.46956 * 60.00157 * 1 2 3 25 25 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 26 26 H 0.96705 * 114.00252 * 299.99813 * 4 2 1 27 27 H 1.08001 * 119.95945 * 359.97438 * 6 5 2 28 28 H 1.07995 * 120.04384 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47190 * 299.99963 * 10 9 8 30 30 H 1.09004 * 109.47089 * 60.00096 * 10 9 8 31 31 H 1.09001 * 109.46962 * 300.00183 * 11 10 9 32 32 H 1.09004 * 109.46832 * 60.00020 * 11 10 9 33 33 H 1.09001 * 109.47372 * 300.00032 * 12 11 10 34 34 H 1.09004 * 109.47108 * 60.00288 * 12 11 10 35 35 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.03652 * 179.72871 * 21 8 7 37 37 H 1.08002 * 119.95934 * 180.31973 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0324 -0.7104 1.2304 6 6 2.3608 0.0160 2.3607 7 6 2.8210 -0.6315 3.4901 8 6 2.9545 -2.0148 3.4900 9 16 3.5419 -2.8453 4.9287 10 6 3.5321 -4.5883 4.4262 11 6 4.0254 -5.4562 5.5858 12 6 4.0165 -6.9264 5.1621 13 6 4.5017 -7.7812 6.3045 14 1 4.7874 -7.3218 7.2393 15 6 4.5799 -9.1498 6.1565 16 7 5.0038 -9.8957 7.1532 17 14 4.0851 -9.9443 4.5399 18 1 5.2689 -10.0295 3.6475 19 1 3.5614 -11.3095 4.7993 20 1 3.0316 -9.1255 3.8880 21 6 2.6295 -2.7409 2.3504 22 6 2.1637 -2.0872 1.2269 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7210 -1.5953 -1.2328 27 1 2.2572 1.0910 2.3598 28 1 3.0768 -0.0636 4.3724 29 1 2.5179 -4.8832 4.1571 30 1 4.1896 -4.7225 3.5672 31 1 5.0397 -5.1613 5.8545 32 1 3.3682 -5.3221 6.4450 33 1 3.0020 -7.2211 4.8937 34 1 4.6734 -7.0608 4.3027 35 1 5.0592 -10.8586 7.0491 36 1 2.7362 -3.8156 2.3454 37 1 1.9060 -2.6513 0.3427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070621170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:12 Heat of formation + Delta-G solvation = -50.366915 kcal Electronic energy + Delta-G solvation = -16812.650756 eV Core-core repulsion = 14066.108691 eV Total energy + Delta-G solvation = -2746.542066 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82102 -37.21943 -34.73544 -32.46146 -32.15073 -31.13512 -29.60225 -28.12153 -24.45088 -23.52961 -22.57469 -21.38443 -20.29926 -18.10539 -17.16797 -16.68224 -16.11769 -15.50989 -14.93452 -14.91295 -14.52813 -14.30322 -14.03056 -13.73676 -13.56460 -12.92200 -12.72847 -12.45192 -12.29031 -12.12785 -12.10556 -11.54831 -11.35507 -11.15267 -10.93905 -10.54316 -10.18925 -10.02004 -9.83126 -9.68077 -9.64049 -9.27743 -9.17707 -8.59573 -7.34369 -6.09428 -4.08476 0.98537 1.18163 1.61379 2.55891 3.26293 3.34013 3.35923 3.43194 4.07398 4.32305 4.39718 4.54455 4.69363 4.81702 4.84674 5.13498 5.20328 5.22568 5.26178 5.32403 5.33344 5.53660 5.56359 5.69979 5.78890 5.84321 6.07864 6.13940 6.28720 6.30246 6.38192 6.68113 6.71596 7.15859 7.22817 7.28722 7.70841 8.47207 8.95029 9.52012 11.03932 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.003391 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.839943 B = 8254.127075 C = 9033.262354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.146 3.854 3 H 0.106 0.894 4 O -0.559 6.559 5 C -0.132 4.132 6 C -0.094 4.094 7 C -0.102 4.102 8 C -0.075 4.075 9 S -0.125 6.125 10 C -0.100 4.100 11 C -0.088 4.088 12 C -0.007 4.007 13 C -0.523 4.523 14 H 0.073 0.927 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.131 4.131 22 C -0.092 4.092 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.374 0.626 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.128 0.872 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 20.086 -13.822 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 H 0.124 0.876 4 O -0.365 6.365 5 C -0.136 4.136 6 C -0.113 4.113 7 C -0.126 4.126 8 C -0.188 4.188 9 S 0.122 5.878 10 C -0.248 4.248 11 C -0.127 4.127 12 C -0.046 4.046 13 C -0.561 4.561 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.155 4.155 22 C -0.112 4.112 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.223 0.777 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.883 20.841 -12.711 25.653 hybrid contribution -0.863 -1.646 -1.794 2.583 sum -8.746 19.195 -14.504 25.599 Atomic orbital electron populations 1.22495 0.95467 1.02956 1.02884 1.20768 0.92928 0.95885 0.81696 0.87611 1.86616 1.77342 1.29248 1.43281 1.20504 1.02113 0.94339 0.96603 1.20836 0.98607 0.99568 0.92337 1.20762 1.00810 0.92238 0.98790 1.21970 1.02104 0.96985 0.97759 1.85639 1.80678 1.04815 1.16644 1.23980 1.04989 0.91677 1.04176 1.21305 1.01164 0.95525 0.94738 1.19567 0.96816 0.90752 0.97448 1.21088 1.44086 0.91319 0.99594 0.90863 1.25023 0.94597 0.97324 0.96481 1.69911 1.47084 1.05497 1.31519 0.86774 0.79385 0.78726 0.84369 1.20223 1.21282 1.19082 1.21236 1.01389 1.00097 0.92769 1.20703 0.99091 0.93676 0.97740 0.91270 0.91497 0.92088 0.77742 0.85621 0.85382 0.89770 0.89752 0.91563 0.91558 0.96405 0.96823 0.92637 0.85414 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 9.52 37.16 0.35 -0.81 16 2 C 0.15 1.16 3.83 -27.88 -0.11 1.05 16 3 H 0.11 0.77 8.05 -51.93 -0.42 0.35 16 4 O -0.56 -4.98 13.13 -35.23 -0.46 -5.44 16 5 C -0.13 -1.28 5.01 -104.57 -0.52 -1.80 16 6 C -0.09 -0.91 9.67 -39.61 -0.38 -1.30 16 7 C -0.10 -1.17 9.79 -39.36 -0.39 -1.56 16 8 C -0.07 -0.99 6.11 -39.03 -0.24 -1.23 16 9 S -0.13 -1.84 21.92 -107.50 -2.36 -4.20 16 10 C -0.10 -1.57 4.33 37.16 0.16 -1.41 16 11 C -0.09 -1.70 5.16 -26.73 -0.14 -1.83 16 12 C -0.01 -0.15 4.04 -27.88 -0.11 -0.26 16 13 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 14 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 17 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 21 C -0.13 -1.61 9.36 -39.36 -0.37 -1.98 16 22 C -0.09 -0.95 9.32 -39.62 -0.37 -1.32 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.37 2.20 7.38 45.56 0.34 2.54 16 27 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.08 1.25 7.76 -51.92 -0.40 0.85 16 30 H 0.08 1.26 7.73 -51.92 -0.40 0.85 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.13 1.53 5.88 -52.49 -0.31 1.22 16 37 H 0.12 0.93 6.60 -52.49 -0.35 0.59 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -31.45 319.83 -9.29 -40.75 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.85 Total: -0.08 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.54 Total: -25.67 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.46 Total: -5.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.36 Total: -4.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.45 -9.29 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.622 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds