Wall clock time and date at job start Mon Mar 30 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47337 * 2 1 4 4 O 1.42896 * 109.47078 * 239.99708 * 2 1 3 5 5 C 1.50703 * 109.47454 * 120.00091 * 2 1 3 6 6 C 1.38306 * 119.91846 * 265.00452 * 5 2 1 7 7 C 1.38079 * 120.08472 * 179.97438 * 6 5 2 8 8 C 1.38981 * 119.91476 * 0.02562 * 7 6 5 9 9 S 1.76195 * 120.07741 * 179.97438 * 8 7 6 10 10 C 1.81399 * 102.99929 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47245 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46946 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99734 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00111 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99915 * 17 15 13 19 19 H 1.48503 * 109.46827 * 209.99661 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99749 * 17 15 13 21 21 C 1.38979 * 119.84021 * 0.27667 * 8 7 6 22 22 C 1.38081 * 119.91731 * 359.40196 * 21 8 7 23 23 H 1.09001 * 109.46590 * 300.00239 * 1 2 3 24 24 H 1.08997 * 109.46956 * 60.00157 * 1 2 3 25 25 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 26 26 H 0.96705 * 114.00252 * 299.99813 * 4 2 1 27 27 H 1.08001 * 119.95945 * 359.97438 * 6 5 2 28 28 H 1.07995 * 120.04384 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47190 * 299.99963 * 10 9 8 30 30 H 1.09004 * 109.47089 * 60.00096 * 10 9 8 31 31 H 1.09001 * 109.46962 * 300.00183 * 11 10 9 32 32 H 1.09004 * 109.46832 * 60.00020 * 11 10 9 33 33 H 1.09001 * 109.47372 * 300.00032 * 12 11 10 34 34 H 1.09004 * 109.47108 * 60.00288 * 12 11 10 35 35 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.03652 * 179.72871 * 21 8 7 37 37 H 1.08002 * 119.95934 * 180.31973 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0324 -0.7104 1.2304 6 6 2.3608 0.0160 2.3607 7 6 2.8210 -0.6315 3.4901 8 6 2.9545 -2.0148 3.4900 9 16 3.5419 -2.8453 4.9287 10 6 3.5321 -4.5883 4.4262 11 6 4.0254 -5.4562 5.5858 12 6 4.0165 -6.9264 5.1621 13 6 4.5017 -7.7812 6.3045 14 1 4.7874 -7.3218 7.2393 15 6 4.5799 -9.1498 6.1565 16 7 5.0038 -9.8957 7.1532 17 14 4.0851 -9.9443 4.5399 18 1 5.2689 -10.0295 3.6475 19 1 3.5614 -11.3095 4.7993 20 1 3.0316 -9.1255 3.8880 21 6 2.6295 -2.7409 2.3504 22 6 2.1637 -2.0872 1.2269 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7210 -1.5953 -1.2328 27 1 2.2572 1.0910 2.3598 28 1 3.0768 -0.0636 4.3724 29 1 2.5179 -4.8832 4.1571 30 1 4.1896 -4.7225 3.5672 31 1 5.0397 -5.1613 5.8545 32 1 3.3682 -5.3221 6.4450 33 1 3.0020 -7.2211 4.8937 34 1 4.6734 -7.0608 4.3027 35 1 5.0592 -10.8586 7.0491 36 1 2.7362 -3.8156 2.3454 37 1 1.9060 -2.6513 0.3427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070621170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:11 Heat of formation + Delta-G solvation = -69.335539 kcal Electronic energy + Delta-G solvation = -16813.473298 eV Core-core repulsion = 14066.108691 eV Total energy + Delta-G solvation = -2747.364607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.57279 -37.90143 -36.47808 -34.23522 -33.12173 -31.97995 -30.33013 -29.83810 -25.50074 -24.80177 -23.58939 -22.23356 -21.88653 -19.12069 -18.74177 -17.90139 -16.85177 -16.56285 -16.36155 -16.16066 -15.67931 -15.24539 -15.07297 -14.67790 -14.50992 -14.36443 -13.90057 -13.86244 -13.49527 -13.27503 -12.94550 -12.77455 -12.71907 -12.26277 -11.89138 -11.85284 -11.65329 -11.60332 -11.39270 -11.19611 -11.06376 -10.78290 -10.51180 -9.99128 -8.40802 -8.30773 -6.36205 0.14566 0.36676 0.50705 1.36226 1.38253 1.44924 1.49879 2.35412 2.62666 3.04559 3.53123 3.65970 3.80291 3.92154 3.92765 3.95319 4.23145 4.27030 4.38066 4.44460 4.55430 4.68791 4.71690 4.76504 4.84913 4.93714 4.96174 5.05708 5.22201 5.28993 5.30739 5.39104 5.48336 5.55104 5.62055 5.89511 6.25092 6.71740 6.75414 7.28460 8.86231 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.003391 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.839943 B = 8254.127075 C = 9033.262354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.148 3.852 3 H 0.114 0.886 4 O -0.574 6.574 5 C -0.128 4.128 6 C -0.093 4.093 7 C -0.111 4.111 8 C -0.094 4.094 9 S -0.149 6.149 10 C -0.089 4.089 11 C -0.080 4.080 12 C -0.004 4.004 13 C -0.537 4.537 14 H 0.030 0.970 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.242 1.242 21 C -0.144 4.144 22 C -0.097 4.097 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.386 0.614 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 21.417 -16.961 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.090 3.910 3 H 0.132 0.868 4 O -0.382 6.382 5 C -0.131 4.131 6 C -0.113 4.113 7 C -0.135 4.135 8 C -0.207 4.207 9 S 0.097 5.903 10 C -0.237 4.237 11 C -0.119 4.119 12 C -0.043 4.043 13 C -0.575 4.575 14 H 0.048 0.952 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.165 1.165 21 C -0.168 4.168 22 C -0.117 4.117 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.236 0.764 27 H 0.172 0.828 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.293 22.193 -15.863 28.819 hybrid contribution -0.424 -1.936 -0.790 2.134 sum -9.717 20.257 -16.653 27.966 Atomic orbital electron populations 1.22453 0.94238 1.03217 1.03460 1.20843 0.93772 0.95902 0.80529 0.86797 1.86597 1.77740 1.30377 1.43514 1.20835 1.00739 0.94290 0.97217 1.21178 0.97466 1.01071 0.91586 1.20967 1.00942 0.91735 0.99832 1.21965 1.03966 0.97610 0.97134 1.85622 1.81814 1.04276 1.18571 1.23698 1.05561 0.91894 1.02520 1.21061 1.00657 0.94263 0.95936 1.19495 0.96975 0.92141 0.95697 1.21471 1.43923 0.92347 0.99775 0.95199 1.26075 0.94516 0.98010 1.00855 1.70078 1.48859 1.06006 1.34352 0.85601 0.79927 0.77666 0.79115 1.19053 1.21043 1.16496 1.21365 1.02011 1.00268 0.93190 1.21015 0.98394 0.94302 0.97952 0.90852 0.90781 0.92016 0.76380 0.82820 0.84755 0.88718 0.88774 0.92598 0.92555 0.95483 0.95659 0.92426 0.85482 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.52 71.98 0.69 -1.03 16 2 C 0.15 1.88 3.83 29.85 0.11 1.99 16 3 H 0.11 1.26 8.05 -2.39 -0.02 1.24 16 4 O -0.57 -8.51 13.13 -148.98 -1.96 -10.47 16 5 C -0.13 -2.09 5.01 -19.83 -0.10 -2.19 16 6 C -0.09 -1.57 9.67 22.25 0.22 -1.35 16 7 C -0.11 -2.37 9.79 22.41 0.22 -2.15 16 8 C -0.09 -2.36 6.11 22.63 0.14 -2.23 16 9 S -0.15 -4.32 21.92 -56.49 -1.24 -5.56 16 10 C -0.09 -2.69 4.33 71.98 0.31 -2.38 16 11 C -0.08 -3.10 5.16 30.59 0.16 -2.94 16 12 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 13 C -0.54 -31.07 9.66 25.60 0.25 -30.82 16 14 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 15 C 0.00 0.13 5.47 84.65 0.46 0.59 16 16 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 17 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 21 C -0.14 -3.29 9.36 22.41 0.21 -3.08 16 22 C -0.10 -1.75 9.32 22.25 0.21 -1.54 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.39 3.37 7.38 -74.05 -0.55 2.82 16 27 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 28 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.09 2.66 7.76 -2.39 -0.02 2.64 16 30 H 0.09 2.66 7.73 -2.39 -0.02 2.64 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.03 1.18 7.20 -2.39 -0.02 1.17 16 34 H 0.03 1.09 7.57 -2.38 -0.02 1.08 16 35 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 36 H 0.13 2.82 5.88 -2.91 -0.02 2.80 16 37 H 0.15 1.78 6.60 -2.91 -0.02 1.76 16 Total: -1.00 -69.00 319.83 2.43 -66.56 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.45 Total: 11.07 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 2.99 Total: -47.20 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.30 Total: -59.80 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.96 Total: -10.47 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.24 Total: -5.56 kcal Total: -69.00 2.43 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.771 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds