Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46700 * 2 1 4 4 H 1.08999 * 109.72024 * 304.38213 * 3 2 1 5 5 C 1.53969 * 109.88840 * 183.69506 * 3 2 1 6 6 N 1.47045 * 108.01370 * 297.19088 * 5 3 2 7 7 C 1.36801 * 120.57579 * 134.87202 * 6 5 3 8 8 H 1.08005 * 119.99346 * 206.00516 * 7 6 5 9 9 C 1.38738 * 120.00327 * 25.72575 * 7 6 5 10 10 N 1.31633 * 120.00156 * 16.07487 * 9 7 6 11 11 Si 1.86800 * 119.99936 * 196.07557 * 9 7 6 12 12 H 1.48494 * 109.47515 * 89.99957 * 11 9 7 13 13 H 1.48504 * 109.47071 * 210.00234 * 11 9 7 14 14 H 1.48502 * 109.47212 * 329.99825 * 11 9 7 15 15 C 1.39638 * 118.83959 * 314.59644 * 6 5 3 16 16 C 1.38813 * 120.27435 * 196.79659 * 15 6 5 17 17 C 1.38186 * 119.87713 * 180.09741 * 16 15 6 18 18 C 1.38475 * 120.25847 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 119.87365 * 179.97438 * 18 17 16 20 20 C 1.38399 * 120.25782 * 359.96882 * 18 17 16 21 21 C 1.38587 * 119.86986 * 0.02562 * 20 18 17 22 22 N 1.39990 * 120.26817 * 180.08266 * 21 20 18 23 23 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47613 * 300.00106 * 1 2 3 25 25 H 1.09000 * 109.47411 * 60.00232 * 1 2 3 26 26 H 1.08994 * 109.46956 * 240.00240 * 2 1 3 27 27 H 1.09004 * 109.46687 * 119.99795 * 2 1 3 28 28 H 1.08997 * 109.89303 * 177.53527 * 5 3 2 29 29 H 1.08999 * 109.74209 * 56.76392 * 5 3 2 30 30 H 0.96998 * 119.99823 * 184.98824 * 10 9 7 31 31 H 1.08004 * 120.06466 * 0.07496 * 16 15 6 32 32 H 1.07992 * 119.86930 * 179.97438 * 17 16 15 33 33 H 1.07994 * 120.06299 * 180.02562 * 20 18 17 34 34 H 0.97001 * 120.62564 * 16.54736 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6162 1.9824 -0.8468 5 6 3.5767 1.4548 -0.0933 6 7 4.1104 0.7929 1.1064 7 6 5.1189 -0.1257 1.0038 8 1 5.2281 -0.8937 1.7553 9 6 5.9977 -0.0744 -0.0685 10 7 6.0731 1.0132 -0.8062 11 14 7.0741 -1.5486 -0.4654 12 1 6.3606 -2.4417 -1.4132 13 1 8.3423 -1.0837 -1.0825 14 1 7.3753 -2.2923 0.7842 15 6 3.5739 1.1228 2.3526 16 6 4.2585 0.8012 3.5166 17 6 3.7190 1.1297 4.7456 18 6 2.4982 1.7790 4.8207 19 17 1.8294 2.1864 6.3700 20 6 1.8093 2.1046 3.6654 21 6 2.3430 1.7790 2.4286 22 7 1.6541 2.1059 1.2546 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.9374 2.4825 -0.1373 29 1 3.8958 0.9141 -0.9843 30 1 6.6332 1.0242 -1.5981 31 1 5.2109 0.2948 3.4618 32 1 4.2515 0.8790 5.6511 33 1 0.8577 2.6114 3.7276 34 1 0.9359 2.7578 1.2683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076929437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = 16.093673 kcal Electronic energy + Delta-G solvation = -18455.507811 eV Core-core repulsion = 15606.263643 eV Total energy + Delta-G solvation = -2849.244168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05750 -38.14152 -36.76916 -36.57232 -33.58760 -33.41160 -30.44840 -30.28446 -28.41435 -25.78771 -24.53806 -23.34300 -22.74126 -20.11605 -19.10577 -18.40319 -17.80766 -16.86966 -16.17462 -15.61548 -15.53692 -15.30361 -15.03275 -14.60935 -14.44511 -14.15409 -13.72112 -13.46310 -13.09745 -12.95187 -12.72340 -12.62475 -12.27609 -12.21473 -12.16354 -12.00266 -11.76056 -11.68385 -11.37508 -10.95803 -10.62894 -10.15630 -8.79388 -8.25876 -7.84983 -5.64127 0.74664 0.88281 1.43367 1.44865 1.53090 1.57785 2.28619 2.73781 2.89870 3.25929 3.31920 3.94825 4.14977 4.22848 4.27112 4.48481 4.59741 4.71551 4.79484 4.84585 4.89427 4.99557 5.16255 5.26836 5.31035 5.34425 5.40376 5.45059 5.47971 5.62594 5.77006 5.97557 6.16501 6.55836 6.79235 7.18756 7.47728 7.83137 8.76480 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.007220 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.791596 B = 3876.928167 C = 4886.632172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.141 3.859 4 H 0.110 0.890 5 C 0.145 3.855 6 N -0.469 5.469 7 C -0.307 4.307 8 H 0.082 0.918 9 C -0.015 4.015 10 N -0.906 5.906 11 Si 0.979 3.021 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.142 3.858 16 C -0.193 4.193 17 C -0.103 4.103 18 C -0.095 4.095 19 Cl -0.092 7.092 20 C -0.136 4.136 21 C 0.123 3.877 22 N -0.738 5.738 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.267 0.733 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 0.615 2.268 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.034 3.966 4 H 0.128 0.872 5 C 0.020 3.980 6 N -0.160 5.160 7 C -0.435 4.435 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.545 5.545 11 Si 0.804 3.196 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.192 1.192 15 C 0.028 3.972 16 C -0.219 4.219 17 C -0.124 4.124 18 C -0.125 4.125 19 Cl -0.064 7.064 20 C -0.160 4.160 21 C 0.019 3.981 22 N -0.373 5.373 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.123 0.565 1.841 9.324 hybrid contribution 0.806 -0.344 -0.183 0.896 sum -8.316 0.221 1.658 8.483 Atomic orbital electron populations 1.21614 0.93691 1.01637 1.02114 1.21729 0.97257 0.96252 1.00830 1.21656 0.94000 0.93694 0.87282 0.87180 1.21691 0.91456 0.95534 0.89349 1.42466 1.33357 1.38719 1.01504 1.19622 1.06587 1.06168 1.11153 0.90073 1.25968 0.97785 0.99449 0.98316 1.70196 1.40705 1.26523 1.17077 0.85104 0.77488 0.78303 0.78662 1.19804 1.21160 1.19180 1.18157 0.92601 0.99011 0.87402 1.20284 1.00890 1.09859 0.90890 1.20527 0.94809 1.00118 0.96946 1.20038 0.97390 1.09895 0.85211 1.98265 1.85713 1.93183 1.29219 1.20106 1.00762 1.06467 0.88715 1.17139 0.90568 1.02922 0.87520 1.44211 1.40631 1.48276 1.04218 0.92818 0.92811 0.91350 0.92276 0.94701 0.95825 0.90596 0.92362 0.87383 0.85445 0.84462 0.75698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.80 71.98 0.71 -2.62 16 2 C -0.12 -4.00 5.32 30.59 0.16 -3.83 16 3 C 0.14 4.73 3.30 45.21 0.15 4.88 16 4 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 5 C 0.14 6.44 4.64 86.60 0.40 6.84 16 6 N -0.47 -22.82 2.45 -508.23 -1.24 -24.06 16 7 C -0.31 -15.90 8.68 84.04 0.73 -15.17 16 8 H 0.08 4.22 7.08 -2.91 -0.02 4.20 16 9 C -0.01 -0.76 4.95 84.84 0.42 -0.34 16 10 N -0.91 -48.14 11.13 21.64 0.24 -47.90 16 11 Si 0.98 40.84 29.58 68.60 2.03 42.87 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 15 C 0.14 6.45 5.89 38.39 0.23 6.68 16 16 C -0.19 -8.50 9.23 22.40 0.21 -8.30 16 17 C -0.10 -3.91 9.81 22.31 0.22 -3.69 16 18 C -0.09 -3.36 6.32 22.36 0.14 -3.22 16 19 Cl -0.09 -2.77 28.95 -2.72 -0.08 -2.85 16 20 C -0.14 -4.71 9.71 22.39 0.22 -4.49 16 21 C 0.12 4.76 6.20 38.27 0.24 4.99 16 22 N -0.74 -23.92 4.97 -315.60 -1.57 -25.49 16 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.35 7.77 -2.39 -0.02 1.33 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.03 1.39 7.18 -2.39 -0.02 1.37 16 28 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 3.63 6.38 -2.39 -0.02 3.61 16 30 H 0.27 13.48 8.32 -92.71 -0.77 12.71 16 31 H 0.11 4.98 6.83 -2.91 -0.02 4.96 16 32 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 34 H 0.41 10.52 8.90 -92.71 -0.83 9.69 16 Total: -1.00 -56.05 291.54 3.49 -52.56 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.29 Total: 23.14 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 3.82 Total: -18.28 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -2.57 Total: -97.45 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -0.08 Total: -2.85 kcal Total: -56.05 3.49 -52.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076929437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.653 kcal (2) G-P(sol) polarization free energy of solvation -56.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds