Wall clock time and date at job start Mon Mar 30 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46884 * 2 1 4 4 H 1.08995 * 109.71897 * 55.60327 * 3 2 1 5 5 C 1.53558 * 109.71513 * 176.25239 * 3 2 1 6 6 N 1.47042 * 108.21433 * 63.06957 * 5 3 2 7 7 C 1.36796 * 120.58758 * 225.12359 * 6 5 3 8 8 H 1.08001 * 120.00189 * 154.83320 * 7 6 5 9 9 C 1.38745 * 120.00104 * 334.83915 * 7 6 5 10 10 N 1.31633 * 119.99994 * 343.28147 * 9 7 6 11 11 Si 1.86809 * 119.99985 * 163.28213 * 9 7 6 12 12 H 1.48501 * 109.47048 * 60.00119 * 11 9 7 13 13 H 1.48495 * 109.46794 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47058 * 299.99912 * 11 9 7 15 15 C 1.39652 * 118.82612 * 45.15433 * 6 5 3 16 16 C 1.38820 * 120.26798 * 163.39209 * 15 6 5 17 17 C 1.38174 * 119.87396 * 179.81457 * 16 15 6 18 18 C 1.38478 * 120.25674 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.87326 * 180.02562 * 18 17 16 20 20 C 1.38389 * 120.25707 * 0.03990 * 18 17 16 21 21 C 1.38581 * 119.88169 * 359.97438 * 20 18 17 22 22 N 1.39990 * 120.28403 * 179.90145 * 21 20 18 23 23 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46942 * 300.00454 * 1 2 3 25 25 H 1.08997 * 109.46962 * 59.99853 * 1 2 3 26 26 H 1.08993 * 109.46671 * 239.99661 * 2 1 3 27 27 H 1.09004 * 109.46767 * 119.99807 * 2 1 3 28 28 H 1.09001 * 109.71484 * 182.74943 * 5 3 2 29 29 H 1.08996 * 109.71352 * 303.39076 * 5 3 2 30 30 H 0.96996 * 119.99567 * 185.03804 * 10 9 7 31 31 H 1.08006 * 120.05989 * 359.80058 * 16 15 6 32 32 H 1.07997 * 119.86822 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.06379 * 180.02562 * 20 18 17 34 34 H 0.96997 * 120.61673 * 343.52016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6161 1.9824 0.8466 5 6 3.5727 1.4501 0.0945 6 7 4.1104 0.7928 -1.1059 7 6 5.1175 -0.1273 -1.0036 8 1 5.2371 -0.8839 -1.7650 9 6 5.9851 -0.0888 0.0784 10 7 6.0622 0.9946 0.8220 11 14 7.0439 -1.5746 0.4800 12 1 7.9248 -1.8816 -0.6754 13 1 7.8776 -1.2802 1.6730 14 1 6.1713 -2.7427 0.7613 15 6 3.5753 1.1251 -2.3523 16 6 4.2612 0.8049 -3.5160 17 6 3.7224 1.1340 -4.7451 18 6 2.5007 1.7816 -4.8206 19 17 1.8327 2.1898 -6.3700 20 6 1.8103 2.1048 -3.6656 21 6 2.3432 1.7788 -2.4286 22 7 1.6529 2.1036 -1.2548 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9329 2.4777 0.1436 29 1 3.8889 0.9060 0.9844 30 1 6.7199 1.0491 1.5328 31 1 5.2142 0.2997 -3.4608 32 1 4.2558 0.8845 -5.6504 33 1 0.8575 2.6095 -3.7281 34 1 0.9333 2.7539 -1.2687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076929438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:58 Heat of formation + Delta-G solvation = 16.877808 kcal Electronic energy + Delta-G solvation = -18456.576490 eV Core-core repulsion = 15607.366325 eV Total energy + Delta-G solvation = -2849.210165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06345 -38.14617 -36.76994 -36.57106 -33.59130 -33.41063 -30.45939 -30.28306 -28.41436 -25.79123 -24.53709 -23.34005 -22.73987 -20.11536 -19.09250 -18.40903 -17.81192 -16.86903 -16.17671 -15.61235 -15.53300 -15.31053 -15.04311 -14.60542 -14.44266 -14.15200 -13.72789 -13.44084 -13.06030 -12.96493 -12.72343 -12.61108 -12.30326 -12.22918 -12.16518 -11.99530 -11.76447 -11.68870 -11.37802 -10.96318 -10.62779 -10.15488 -8.76042 -8.28083 -7.85964 -5.61128 0.75191 0.88896 1.42444 1.46001 1.51541 1.58406 2.27462 2.73985 2.89271 3.25427 3.32009 3.95415 4.15310 4.22415 4.26992 4.48891 4.59735 4.71327 4.79801 4.84573 4.89863 4.99865 5.16046 5.27144 5.31143 5.34404 5.40470 5.46346 5.47786 5.63016 5.77725 5.98204 6.16887 6.56112 6.78915 7.18876 7.47846 7.82946 8.76130 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.007212 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.524366 B = 3881.367750 C = 4885.435288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.141 3.859 4 H 0.111 0.889 5 C 0.145 3.855 6 N -0.467 5.467 7 C -0.311 4.311 8 H 0.082 0.918 9 C -0.014 4.014 10 N -0.908 5.908 11 Si 0.982 3.018 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.141 3.859 16 C -0.194 4.194 17 C -0.102 4.102 18 C -0.096 4.096 19 Cl -0.093 7.093 20 C -0.135 4.135 21 C 0.122 3.878 22 N -0.738 5.738 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.077 0.923 30 H 0.268 0.732 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 0.664 -2.305 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.034 3.966 4 H 0.128 0.872 5 C 0.020 3.980 6 N -0.159 5.159 7 C -0.440 4.440 8 H 0.100 0.900 9 C -0.214 4.214 10 N -0.546 5.546 11 Si 0.807 3.193 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.027 3.973 16 C -0.220 4.220 17 C -0.123 4.123 18 C -0.127 4.127 19 Cl -0.064 7.064 20 C -0.160 4.160 21 C 0.018 3.982 22 N -0.373 5.373 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.954 0.567 -1.783 9.148 hybrid contribution 0.851 -0.325 0.120 0.919 sum -8.103 0.242 -1.663 8.276 Atomic orbital electron populations 1.21615 0.93686 1.01626 1.02122 1.21741 0.97280 0.96295 1.00788 1.21571 0.94061 0.93701 0.87316 0.87162 1.21620 0.91461 0.95620 0.89317 1.42471 1.33266 1.38657 1.01483 1.19572 1.08607 1.06797 1.08974 0.89991 1.25989 0.98471 0.99742 0.97197 1.70112 1.35472 1.27215 1.21805 0.85137 0.78025 0.78398 0.77788 1.19675 1.20736 1.19490 1.18148 0.92612 0.99137 0.87374 1.20274 1.00915 1.09954 0.90880 1.20522 0.94787 1.00086 0.96938 1.20026 0.97397 1.10047 0.85185 1.98264 1.85759 1.93170 1.29229 1.20095 1.00742 1.06472 0.88720 1.17133 0.90544 1.03041 0.87510 1.44190 1.40434 1.48499 1.04199 0.92837 0.91343 0.92794 0.94729 0.92338 0.95877 0.90501 0.92220 0.87364 0.85457 0.84499 0.75710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.80 71.98 0.71 -2.64 16 2 C -0.12 -4.04 5.31 30.60 0.16 -3.87 16 3 C 0.14 4.75 3.29 45.08 0.15 4.90 16 4 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 5 C 0.15 6.46 4.62 86.46 0.40 6.86 16 6 N -0.47 -22.80 2.45 -508.97 -1.25 -24.04 16 7 C -0.31 -16.13 8.71 84.04 0.73 -15.40 16 8 H 0.08 4.25 7.04 -2.91 -0.02 4.23 16 9 C -0.01 -0.69 4.94 84.84 0.42 -0.27 16 10 N -0.91 -48.11 11.13 21.64 0.24 -47.87 16 11 Si 0.98 40.74 29.59 68.60 2.03 42.77 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 14 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 15 C 0.14 6.43 5.90 38.39 0.23 6.66 16 16 C -0.19 -8.55 9.23 22.39 0.21 -8.34 16 17 C -0.10 -3.89 9.81 22.31 0.22 -3.67 16 18 C -0.10 -3.41 6.32 22.36 0.14 -3.27 16 19 Cl -0.09 -2.79 28.95 -2.72 -0.08 -2.87 16 20 C -0.14 -4.72 9.71 22.39 0.22 -4.50 16 21 C 0.12 4.74 6.20 38.27 0.24 4.98 16 22 N -0.74 -24.03 4.96 -316.38 -1.57 -25.59 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.05 1.36 7.76 -2.39 -0.02 1.34 16 26 H 0.03 1.38 7.18 -2.39 -0.02 1.37 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 3.70 6.35 -2.39 -0.02 3.68 16 30 H 0.27 13.59 8.32 -92.71 -0.77 12.82 16 31 H 0.11 4.98 6.81 -2.91 -0.02 4.96 16 32 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.41 10.57 8.90 -92.71 -0.83 9.75 16 Total: -1.00 -55.92 291.44 3.48 -52.44 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.29 Total: 23.74 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 3.82 Total: -18.57 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -2.58 Total: -97.51 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.08 Total: -2.87 kcal Total: -55.92 3.48 -52.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076929438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.321 kcal (2) G-P(sol) polarization free energy of solvation -55.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds