Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.50706 * 109.47258 * 120.00042 * 2 1 3 5 5 C 1.38231 * 120.00101 * 59.72093 * 4 2 1 6 6 C 1.38235 * 120.00034 * 179.81283 * 5 4 2 7 7 C 1.38237 * 119.99836 * 0.40158 * 6 5 4 8 8 C 1.38237 * 120.00129 * 359.85319 * 7 6 5 9 9 C 1.38236 * 119.99843 * 359.95694 * 8 7 6 10 10 S 1.81405 * 109.47268 * 239.99436 * 2 1 3 11 11 O 1.42095 * 109.47054 * 171.38843 * 10 2 1 12 12 C 1.81399 * 102.99706 * 55.00295 * 10 2 1 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 10 2 14 14 C 1.53006 * 109.46974 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99745 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00005 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46731 * 90.00468 * 19 17 15 21 21 H 1.48499 * 109.47078 * 209.99919 * 19 17 15 22 22 H 1.48491 * 109.47340 * 330.00301 * 19 17 15 23 23 H 1.09000 * 109.46813 * 300.00726 * 1 2 3 24 24 H 1.08998 * 109.46475 * 60.00353 * 1 2 3 25 25 H 1.08995 * 109.46888 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99991 * 0.02562 * 5 4 2 27 27 H 1.08003 * 120.00390 * 180.22841 * 6 5 4 28 28 H 1.08003 * 119.99923 * 179.83135 * 7 6 5 29 29 H 1.08001 * 119.99958 * 179.97438 * 8 7 6 30 30 H 1.08001 * 119.99926 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.47089 * 299.99939 * 12 10 2 32 32 H 1.09004 * 109.47568 * 59.99949 * 12 10 2 33 33 H 1.09000 * 109.46497 * 299.99702 * 13 12 10 34 34 H 1.08996 * 109.46876 * 60.00092 * 13 12 10 35 35 H 1.08993 * 109.46955 * 300.00073 * 14 13 12 36 36 H 1.09000 * 109.47050 * 59.99902 * 14 13 12 37 37 H 0.97001 * 119.99275 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6937 -2.0322 1.4522 6 6 2.1577 -2.6849 2.5789 7 6 2.9536 -2.0135 3.4881 8 6 3.2879 -0.6902 3.2691 9 6 2.8271 -0.0386 2.1404 10 16 2.1347 -0.8553 -1.4811 11 8 3.5414 -0.6841 -1.5857 12 6 1.3150 0.0372 -2.8309 13 6 1.7280 -0.5741 -4.1713 14 6 1.0360 0.1784 -5.3098 15 6 1.4433 -0.4233 -6.6300 16 1 2.1276 -1.2585 -6.6547 17 6 0.9432 0.0931 -7.8065 18 7 1.2991 -0.4317 -8.9588 19 14 -0.2398 1.5382 -7.7639 20 1 0.5279 2.8081 -7.8228 21 1 -1.1582 1.4605 -8.9282 22 1 -1.0291 1.4948 -6.5069 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.0694 -2.5559 0.7433 27 1 1.8962 -3.7187 2.7503 28 1 3.3139 -2.5227 4.3698 29 1 3.9094 -0.1655 3.9797 30 1 3.0880 0.9954 1.9695 31 1 0.2340 -0.0406 -2.7141 32 1 1.6087 1.0866 -2.8038 33 1 2.8089 -0.4965 -4.2882 34 1 1.4338 -1.6232 -4.1981 35 1 -0.0448 0.1005 -5.1925 36 1 1.3297 1.2277 -5.2830 37 1 0.9469 -0.0686 -9.7864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078734125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = -32.836357 kcal Electronic energy + Delta-G solvation = -17229.799892 eV Core-core repulsion = 14484.018009 eV Total energy + Delta-G solvation = -2745.781884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49195 -35.54936 -34.63246 -34.35907 -32.09935 -31.10747 -29.64846 -27.97217 -24.34789 -23.32650 -22.74348 -21.27638 -20.17814 -17.48644 -16.92761 -16.66530 -15.92716 -15.59531 -14.94728 -14.84666 -14.47122 -14.06502 -13.93178 -13.49669 -13.29800 -13.07459 -12.70404 -12.42018 -12.16584 -12.07600 -11.81343 -11.61215 -11.28289 -11.13817 -11.10499 -10.82504 -10.46692 -9.96409 -9.76951 -9.54493 -9.20799 -9.11940 -8.77093 -8.54726 -8.02581 -6.04853 -4.03110 1.02328 1.20113 1.71617 2.74101 3.29502 3.36672 3.39367 3.59920 3.92745 4.39029 4.44024 4.61030 4.80226 4.91937 4.94869 5.11131 5.27639 5.28133 5.34225 5.36501 5.45246 5.50094 5.65297 5.80308 5.85076 5.91200 6.08926 6.25620 6.31415 6.36368 6.39563 6.49849 6.79599 6.83218 7.24499 7.38143 7.77572 8.53084 9.00332 9.57301 11.08674 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.003571 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.969490 B = 7838.890915 C = 8043.049244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.382 4.382 3 H 0.094 0.906 4 C -0.050 4.050 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.127 4.127 8 C -0.117 4.117 9 C -0.115 4.115 10 S 1.235 4.765 11 O -0.841 6.841 12 C -0.440 4.440 13 C -0.085 4.085 14 C -0.008 4.008 15 C -0.523 4.523 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.265 1.265 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.019 0.981 36 H 0.009 0.991 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -3.068 25.454 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.497 4.497 3 H 0.112 0.888 4 C -0.051 4.051 5 C -0.141 4.141 6 C -0.132 4.132 7 C -0.145 4.145 8 C -0.135 4.135 9 C -0.134 4.134 10 S 1.436 4.564 11 O -0.836 6.836 12 C -0.578 4.578 13 C -0.124 4.124 14 C -0.047 4.047 15 C -0.561 4.561 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.190 1.190 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.878 -3.793 25.213 25.658 hybrid contribution 0.034 3.215 -0.145 3.219 sum -2.844 -0.578 25.067 25.235 Atomic orbital electron populations 1.21529 0.90276 1.03348 1.02945 1.26586 1.03708 1.08513 1.10899 0.88773 1.19163 0.97422 0.94105 0.94394 1.21106 1.00716 0.93912 0.98349 1.21152 0.97719 0.99941 0.94371 1.21163 0.98930 0.94799 0.99646 1.21129 0.99814 0.95106 0.97442 1.21089 0.97926 0.99956 0.94399 1.70564 0.90001 1.10487 0.85377 1.93117 1.25332 1.81768 1.83416 1.27785 1.09745 1.09467 1.10849 1.21135 1.00880 0.99776 0.90642 1.19567 0.95813 0.95383 0.93887 1.21170 1.28346 1.17580 0.88985 0.90874 1.25036 0.96233 0.96804 0.95442 1.69922 1.44835 1.41912 0.97533 0.86772 0.81498 0.83202 0.77763 1.20423 1.21316 1.18987 0.92014 0.91314 0.90822 0.84923 0.85620 0.86107 0.86139 0.86461 0.86627 0.90051 0.92281 0.91466 0.96259 0.97251 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.75 37.16 0.33 -0.67 16 2 C -0.38 -4.14 3.07 -27.88 -0.09 -4.22 16 3 H 0.09 1.10 7.88 -51.92 -0.41 0.69 16 4 C -0.05 -0.55 4.78 -104.62 -0.50 -1.05 16 5 C -0.12 -1.13 8.78 -39.59 -0.35 -1.48 16 6 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 7 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 8 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 9 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 10 S 1.24 16.23 12.29 -107.50 -1.32 14.91 16 11 O -0.84 -16.64 18.14 -35.23 -0.64 -17.28 16 12 C -0.44 -6.61 5.32 37.16 0.20 -6.41 16 13 C -0.09 -1.69 5.16 -26.73 -0.14 -1.83 16 14 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 15 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 16 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 19 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 25 H 0.07 0.43 7.37 -51.93 -0.38 0.05 16 26 H 0.13 0.85 7.57 -52.48 -0.40 0.45 16 27 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 28 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.12 1.24 7.95 -52.49 -0.42 0.83 16 31 H 0.12 1.38 6.90 -51.92 -0.36 1.02 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -36.94 319.44 -9.32 -46.26 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.61 Total: -2.89 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: -2.67 Total: -35.62 kcal Atomic # 7 Polarization: -28.11 SS G_CDS: 0.77 Total: -27.34 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.64 Total: -17.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 16.23 SS G_CDS: -1.32 Total: 14.91 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.94 -9.32 -46.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078734125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.423 kcal (2) G-P(sol) polarization free energy of solvation -36.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds