Wall clock time and date at job start Mon Mar 30 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47462 * 2 1 4 4 C 1.50706 * 109.47258 * 120.00042 * 2 1 3 5 5 C 1.38231 * 120.00101 * 59.72093 * 4 2 1 6 6 C 1.38235 * 120.00034 * 179.81283 * 5 4 2 7 7 C 1.38237 * 119.99836 * 0.40158 * 6 5 4 8 8 C 1.38237 * 120.00129 * 359.85319 * 7 6 5 9 9 C 1.38236 * 119.99843 * 359.95694 * 8 7 6 10 10 S 1.81405 * 109.47268 * 239.99436 * 2 1 3 11 11 O 1.42095 * 109.47054 * 171.38843 * 10 2 1 12 12 C 1.81399 * 102.99706 * 55.00295 * 10 2 1 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 10 2 14 14 C 1.53006 * 109.46974 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99745 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00005 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46731 * 90.00468 * 19 17 15 21 21 H 1.48499 * 109.47078 * 209.99919 * 19 17 15 22 22 H 1.48491 * 109.47340 * 330.00301 * 19 17 15 23 23 H 1.09000 * 109.46813 * 300.00726 * 1 2 3 24 24 H 1.08998 * 109.46475 * 60.00353 * 1 2 3 25 25 H 1.08995 * 109.46888 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99991 * 0.02562 * 5 4 2 27 27 H 1.08003 * 120.00390 * 180.22841 * 6 5 4 28 28 H 1.08003 * 119.99923 * 179.83135 * 7 6 5 29 29 H 1.08001 * 119.99958 * 179.97438 * 8 7 6 30 30 H 1.08001 * 119.99926 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.47089 * 299.99939 * 12 10 2 32 32 H 1.09004 * 109.47568 * 59.99949 * 12 10 2 33 33 H 1.09000 * 109.46497 * 299.99702 * 13 12 10 34 34 H 1.08996 * 109.46876 * 60.00092 * 13 12 10 35 35 H 1.08993 * 109.46955 * 300.00073 * 14 13 12 36 36 H 1.09000 * 109.47050 * 59.99902 * 14 13 12 37 37 H 0.97001 * 119.99275 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6937 -2.0322 1.4522 6 6 2.1577 -2.6849 2.5789 7 6 2.9536 -2.0135 3.4881 8 6 3.2879 -0.6902 3.2691 9 6 2.8271 -0.0386 2.1404 10 16 2.1347 -0.8553 -1.4811 11 8 3.5414 -0.6841 -1.5857 12 6 1.3150 0.0372 -2.8309 13 6 1.7280 -0.5741 -4.1713 14 6 1.0360 0.1784 -5.3098 15 6 1.4433 -0.4233 -6.6300 16 1 2.1276 -1.2585 -6.6547 17 6 0.9432 0.0931 -7.8065 18 7 1.2991 -0.4317 -8.9588 19 14 -0.2398 1.5382 -7.7639 20 1 0.5279 2.8081 -7.8228 21 1 -1.1582 1.4605 -8.9282 22 1 -1.0291 1.4948 -6.5069 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.0694 -2.5559 0.7433 27 1 1.8962 -3.7187 2.7503 28 1 3.3139 -2.5227 4.3698 29 1 3.9094 -0.1655 3.9797 30 1 3.0880 0.9954 1.9695 31 1 0.2340 -0.0406 -2.7141 32 1 1.6087 1.0866 -2.8038 33 1 2.8089 -0.4965 -4.2882 34 1 1.4338 -1.6232 -4.1981 35 1 -0.0448 0.1005 -5.1925 36 1 1.3297 1.2277 -5.2830 37 1 0.9469 -0.0686 -9.7864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078734125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:28 Heat of formation + Delta-G solvation = -57.343905 kcal Electronic energy + Delta-G solvation = -17230.862619 eV Core-core repulsion = 14484.018009 eV Total energy + Delta-G solvation = -2746.844611 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19170 -36.89679 -36.36759 -35.15783 -34.15271 -31.79207 -30.51679 -29.64199 -25.11919 -25.05812 -23.45625 -22.33245 -21.68048 -19.02553 -18.34485 -17.72084 -16.92943 -16.46137 -16.36684 -16.13574 -15.75061 -15.30969 -14.86581 -14.73002 -14.39718 -14.18085 -13.93842 -13.81714 -13.50535 -13.09868 -13.00342 -12.77194 -12.55265 -12.38244 -12.10752 -11.94440 -11.82058 -11.79097 -11.54505 -11.34834 -10.85645 -10.77676 -9.82698 -9.65062 -9.13895 -8.30041 -6.35026 0.17514 0.49738 0.76701 1.35752 1.37283 1.49835 1.68916 2.35899 2.76052 2.95466 3.05169 3.58128 3.87144 4.00361 4.12227 4.15767 4.22401 4.33852 4.36140 4.54594 4.63642 4.71277 4.77593 4.86528 4.97576 5.05054 5.08269 5.12350 5.18708 5.38051 5.45171 5.53840 5.56948 5.63764 5.65083 5.65910 6.12769 6.27278 6.73293 7.29643 8.87076 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.003571 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.969490 B = 7838.890915 C = 8043.049244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.365 4.365 3 H 0.080 0.920 4 C -0.074 4.074 5 C -0.129 4.129 6 C -0.118 4.118 7 C -0.131 4.131 8 C -0.129 4.129 9 C -0.143 4.143 10 S 1.280 4.720 11 O -0.916 6.916 12 C -0.438 4.438 13 C -0.086 4.086 14 C -0.008 4.008 15 C -0.539 4.539 16 H 0.030 0.970 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.235 1.235 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.007 0.993 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -3.006 27.808 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.483 4.483 3 H 0.099 0.901 4 C -0.075 4.075 5 C -0.148 4.148 6 C -0.135 4.135 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.162 4.162 10 S 1.484 4.516 11 O -0.911 6.911 12 C -0.576 4.576 13 C -0.125 4.125 14 C -0.046 4.046 15 C -0.577 4.577 16 H 0.048 0.952 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.158 1.158 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.180 0.820 27 H 0.173 0.827 28 H 0.163 0.837 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.175 0.825 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.571 -3.746 27.555 28.361 hybrid contribution 0.935 3.118 -0.764 3.343 sum -4.636 -0.628 26.791 27.196 Atomic orbital electron populations 1.21670 0.87527 1.05555 1.03668 1.26399 1.05805 1.07224 1.08883 0.90134 1.19325 0.98439 0.95265 0.94484 1.21526 1.00766 0.93242 0.99237 1.21589 0.96878 1.01297 0.93758 1.21554 0.98441 0.94435 1.00536 1.21392 1.00067 0.95941 0.97343 1.21273 0.99062 1.00194 0.95704 1.69631 0.87185 1.09787 0.85045 1.93000 1.29611 1.83530 1.84975 1.27738 1.12517 1.08596 1.08762 1.21005 0.98483 1.00828 0.92184 1.19549 0.97268 0.95199 0.92598 1.21575 1.27545 1.16710 0.91908 0.95208 1.26099 0.98463 1.00265 0.94763 1.70088 1.46706 1.44063 0.98530 0.85607 0.79036 0.78457 0.79234 1.20100 1.20664 1.15775 0.91427 0.90482 0.87948 0.81994 0.82703 0.83722 0.84775 0.87206 0.82462 0.90916 0.95650 0.89834 0.94066 0.97452 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.75 71.98 0.63 -0.94 16 2 C -0.37 -7.28 3.07 29.85 0.09 -7.19 16 3 H 0.08 1.84 7.88 -2.39 -0.02 1.82 16 4 C -0.07 -1.52 4.78 -19.86 -0.09 -1.62 16 5 C -0.13 -2.03 8.78 22.27 0.20 -1.84 16 6 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 7 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 8 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 9 C -0.14 -3.18 9.67 22.27 0.22 -2.96 16 10 S 1.28 32.27 12.29 -56.49 -0.69 31.57 16 11 O -0.92 -37.18 18.14 -148.98 -2.70 -39.89 16 12 C -0.44 -12.29 5.32 71.98 0.38 -11.91 16 13 C -0.09 -3.39 5.16 30.60 0.16 -3.23 16 14 C -0.01 -0.36 4.04 29.85 0.12 -0.23 16 15 C -0.54 -31.84 9.66 25.60 0.25 -31.59 16 16 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 17 C 0.00 0.03 5.47 84.65 0.46 0.50 16 18 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 19 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.23 -9.68 6.54 99.48 0.65 -9.03 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.86 6.51 -2.39 -0.02 0.84 16 25 H 0.10 0.70 7.37 -2.39 -0.02 0.69 16 26 H 0.16 1.42 7.57 -2.91 -0.02 1.39 16 27 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 28 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.11 2.43 7.95 -2.91 -0.02 2.41 16 31 H 0.16 3.06 6.90 -2.39 -0.02 3.04 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.04 1.75 7.20 -2.39 -0.02 1.74 16 36 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -84.17 319.44 2.84 -81.32 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.97 Total: 7.82 kcal Atomic # 6 Polarization: -69.46 SS G_CDS: 3.08 Total: -66.38 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.30 Total: -60.58 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.70 Total: -39.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Atomic # 16 Polarization: 32.27 SS G_CDS: -0.69 Total: 31.57 kcal Total: -84.17 2.84 -81.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078734125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.980 kcal (2) G-P(sol) polarization free energy of solvation -84.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds