Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 S 1.81400 * 109.47375 * 179.97438 * 10 9 8 12 12 C 1.81397 * 103.00343 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47203 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99920 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00200 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99713 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00329 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47298 * 89.99789 * 17 15 13 19 19 H 1.48504 * 109.47098 * 210.00146 * 17 15 13 20 20 H 1.48500 * 109.46772 * 329.99836 * 17 15 13 21 21 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 25 25 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 27 27 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 28 28 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 29 29 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 30 30 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 31 31 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 32 32 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 33 33 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 34 34 H 1.09003 * 109.46823 * 300.00009 * 12 11 10 35 35 H 1.09004 * 109.46984 * 59.99963 * 12 11 10 36 36 H 0.97006 * 119.99636 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.03255 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 16 8.5032 -5.3008 -0.0251 12 6 10.2920 -4.9997 -0.0239 13 6 11.0232 -6.3174 -0.0303 14 1 10.4673 -7.2434 -0.0351 15 6 12.4017 -6.3409 -0.0311 16 7 13.0785 -5.2133 -0.0269 17 14 13.3081 -7.9742 -0.0398 18 1 13.5475 -8.4001 -1.4421 19 1 14.6089 -7.8222 0.6604 20 1 12.4884 -8.9988 0.6556 21 6 2.1970 -1.1966 -0.0058 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6565 2.1324 -0.0004 26 1 4.1176 2.1381 0.0098 27 1 5.3552 0.0102 0.0002 28 1 6.0278 -1.7576 -0.8990 29 1 6.0280 -1.7669 0.8810 30 1 5.9445 -4.2448 0.8688 31 1 5.9443 -4.2363 -0.9111 32 1 8.1428 -3.0886 -0.9050 33 1 8.1423 -3.0974 0.8749 34 1 10.5649 -4.4288 -0.9115 35 1 10.5651 -4.4365 0.8686 36 1 14.0485 -5.2298 -0.0271 37 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -41.850146 kcal Electronic energy + Delta-G solvation = -16361.288756 eV Core-core repulsion = 13615.116005 eV Total energy + Delta-G solvation = -2746.172751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31532 -37.94933 -33.93755 -33.15916 -32.73575 -30.29933 -28.55872 -27.35246 -26.40708 -23.25666 -22.77699 -21.87747 -20.85605 -17.94191 -16.55470 -16.39479 -16.31543 -16.10371 -15.24675 -14.60681 -14.51200 -14.43708 -13.83225 -13.72016 -13.45194 -12.80373 -12.57652 -12.55478 -12.39190 -12.08171 -12.04694 -11.71011 -11.57906 -11.34300 -10.93438 -10.88855 -10.66189 -10.61961 -9.94433 -9.56527 -9.01930 -8.89181 -8.62830 -8.36204 -6.72486 -6.20914 -4.25056 1.09047 1.25095 2.47134 3.15792 3.25707 3.31287 3.36972 3.53647 3.84487 4.34581 4.55866 4.58521 4.83714 4.84636 4.93550 5.01017 5.09152 5.16315 5.19519 5.24989 5.29475 5.38566 5.39163 5.48738 5.64833 5.80343 5.85004 6.08673 6.11334 6.21966 6.25179 6.35201 6.58313 7.07189 7.08703 7.28674 7.73910 7.99569 8.76880 9.38092 10.90444 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.068119 B = 0.002440 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.948599 B =11473.033008 C =11847.627570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.139 3.861 7 O -0.313 6.313 8 C 0.064 3.936 9 C -0.098 4.098 10 C -0.088 4.088 11 S -0.304 6.304 12 C 0.092 3.908 13 C -0.512 4.512 14 H 0.068 0.932 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.908 3.092 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.157 4.157 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.102 13.092 0.085 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.183 4.183 4 C -0.094 4.094 5 C -0.235 4.235 6 C 0.093 3.907 7 O -0.227 6.227 8 C -0.013 4.013 9 C -0.136 4.136 10 C -0.237 4.237 11 S -0.077 6.077 12 C -0.055 4.055 13 C -0.552 4.552 14 H 0.086 0.914 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.175 4.175 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.513 11.997 0.082 24.632 hybrid contribution 1.593 0.647 -0.001 1.719 sum -19.919 12.643 0.081 23.593 Atomic orbital electron populations 1.20808 0.90807 1.02947 1.02542 1.19702 0.96010 0.92304 0.97026 1.20918 0.94162 0.97476 1.05701 1.20936 0.94169 0.97421 0.96910 1.21314 1.00531 0.92292 1.09334 1.19038 0.91783 0.84879 0.94989 1.86069 1.20549 1.27937 1.88120 1.22909 0.77465 0.99317 1.01572 1.21216 0.93044 0.94587 1.04768 1.23047 0.96552 0.99800 1.04299 1.86658 1.13022 1.09948 1.98059 1.21050 0.83429 1.00975 1.00057 1.20687 0.90852 0.91390 1.52223 0.91424 1.24977 0.97086 0.97244 0.94653 1.69958 1.07482 1.26016 1.49719 0.86333 0.78868 0.82999 0.78359 1.20329 1.20977 1.19520 1.20309 0.90948 0.98644 1.07614 0.90910 0.91354 0.91306 0.86090 0.85823 0.85356 0.91797 0.91804 0.90061 0.90056 0.90702 0.90703 0.94621 0.94611 0.92499 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.05 -0.47 5.88 -104.64 -0.62 -1.08 16 3 C -0.16 -1.46 9.70 -39.56 -0.38 -1.85 16 4 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 5 C -0.22 -2.33 9.04 -39.44 -0.36 -2.69 16 6 C 0.14 1.68 6.69 -39.22 -0.26 1.42 16 7 O -0.31 -4.12 10.14 -19.45 -0.20 -4.32 16 8 C 0.06 0.76 4.74 37.15 0.18 0.94 16 9 C -0.10 -1.35 5.59 -26.74 -0.15 -1.50 16 10 C -0.09 -1.44 5.94 37.15 0.22 -1.22 16 11 S -0.30 -6.60 21.66 -107.50 -2.33 -8.93 16 12 C 0.09 2.39 5.70 36.00 0.21 2.59 16 13 C -0.51 -14.53 9.13 -34.44 -0.31 -14.84 16 14 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 17 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.16 -1.70 9.64 -39.43 -0.38 -2.08 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 24 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 25 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 26 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 27 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 28 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.06 0.70 7.66 -51.92 -0.40 0.30 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -30.24 328.47 -9.59 -39.82 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.73 Total: -2.57 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.99 Total: -20.08 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.74 Total: -25.28 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.20 Total: -4.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -2.33 Total: -8.93 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.24 -9.59 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.026 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds