Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 S 1.81400 * 109.47375 * 179.97438 * 10 9 8 12 12 C 1.81397 * 103.00343 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47203 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99920 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00200 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99713 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00329 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47298 * 89.99789 * 17 15 13 19 19 H 1.48504 * 109.47098 * 210.00146 * 17 15 13 20 20 H 1.48500 * 109.46772 * 329.99836 * 17 15 13 21 21 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 25 25 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 27 27 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 28 28 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 29 29 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 30 30 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 31 31 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 32 32 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 33 33 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 34 34 H 1.09003 * 109.46823 * 300.00009 * 12 11 10 35 35 H 1.09004 * 109.46984 * 59.99963 * 12 11 10 36 36 H 0.97006 * 119.99636 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.03255 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 16 8.5032 -5.3008 -0.0251 12 6 10.2920 -4.9997 -0.0239 13 6 11.0232 -6.3174 -0.0303 14 1 10.4673 -7.2434 -0.0351 15 6 12.4017 -6.3409 -0.0311 16 7 13.0785 -5.2133 -0.0269 17 14 13.3081 -7.9742 -0.0398 18 1 13.5475 -8.4001 -1.4421 19 1 14.6089 -7.8222 0.6604 20 1 12.4884 -8.9988 0.6556 21 6 2.1970 -1.1966 -0.0058 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6565 2.1324 -0.0004 26 1 4.1176 2.1381 0.0098 27 1 5.3552 0.0102 0.0002 28 1 6.0278 -1.7576 -0.8990 29 1 6.0280 -1.7669 0.8810 30 1 5.9445 -4.2448 0.8688 31 1 5.9443 -4.2363 -0.9111 32 1 8.1428 -3.0886 -0.9050 33 1 8.1423 -3.0974 0.8749 34 1 10.5649 -4.4288 -0.9115 35 1 10.5651 -4.4365 0.8686 36 1 14.0485 -5.2298 -0.0271 37 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082693082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = -56.792321 kcal Electronic energy + Delta-G solvation = -16361.936697 eV Core-core repulsion = 13615.116005 eV Total energy + Delta-G solvation = -2746.820692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13319 -38.76445 -35.31374 -35.07373 -33.39999 -31.10953 -30.69222 -28.09385 -27.40963 -25.26083 -23.57229 -22.97391 -21.72594 -18.85646 -18.56018 -17.39352 -17.37358 -16.96030 -16.86340 -16.26457 -15.65853 -15.19355 -14.95818 -14.56455 -14.52551 -14.24923 -14.22731 -13.99309 -13.55169 -13.21059 -12.98215 -12.75530 -12.71827 -12.49455 -12.40186 -12.32167 -11.90616 -11.69776 -11.61124 -11.49244 -10.76104 -10.73207 -9.74237 -9.15655 -8.51775 -8.35087 -6.48235 0.35860 0.48558 0.90523 1.39758 1.40896 1.53421 1.99805 2.19949 2.36041 2.79516 2.99567 3.77627 3.81161 3.89588 3.97493 4.04543 4.16291 4.22979 4.32671 4.41103 4.48425 4.51241 4.57360 4.84799 4.87121 4.90826 4.92221 4.93688 5.01031 5.08300 5.25101 5.37408 5.49925 5.55554 5.65440 5.86913 5.87452 6.43769 6.59055 7.19880 8.76913 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.068119 B = 0.002440 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.948599 B =11473.033008 C =11847.627570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.166 4.166 4 C -0.081 4.081 5 C -0.229 4.229 6 C 0.113 3.887 7 O -0.331 6.331 8 C 0.071 3.929 9 C -0.088 4.088 10 C -0.073 4.073 11 S -0.319 6.319 12 C 0.094 3.906 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.978 3.022 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.266 1.266 21 C -0.174 4.174 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.135 0.865 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.271 0.729 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.191 13.928 0.075 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.184 4.184 4 C -0.099 4.099 5 C -0.247 4.247 6 C 0.068 3.932 7 O -0.245 6.245 8 C -0.006 4.006 9 C -0.127 4.127 10 C -0.222 4.222 11 S -0.092 6.092 12 C -0.053 4.053 13 C -0.577 4.577 14 H 0.080 0.920 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.801 3.199 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.193 4.193 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.164 0.836 26 H 0.164 0.836 27 H 0.153 0.847 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.615 12.837 0.071 26.004 hybrid contribution 1.795 0.511 0.003 1.867 sum -20.819 13.347 0.074 24.730 Atomic orbital electron populations 1.20870 0.88783 1.03923 1.03410 1.20079 0.97574 0.91866 0.95941 1.21300 0.94262 0.98393 1.04459 1.21281 0.94708 0.97841 0.96103 1.21498 1.01071 0.92432 1.09715 1.19307 0.92341 0.84918 0.96678 1.86008 1.20801 1.28991 1.88735 1.22777 0.77376 0.97731 1.02716 1.21062 0.91076 0.96126 1.04425 1.23101 0.97849 0.95852 1.05377 1.86509 1.09728 1.14850 1.98085 1.20736 0.86799 0.99713 0.98062 1.21007 0.91775 0.91969 1.52928 0.92021 1.25931 0.97897 1.01137 0.93779 1.70056 1.08024 1.28226 1.50042 0.85255 0.77599 0.78273 0.78799 1.19370 1.19967 1.19013 1.20536 0.90819 0.99576 1.08330 0.89969 0.89799 0.90972 0.83589 0.83578 0.84689 0.90670 0.90679 0.90442 0.90433 0.89651 0.89655 0.96561 0.96549 0.92037 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.24 0.71 -0.48 16 2 C -0.05 -0.92 5.88 -19.88 -0.12 -1.04 16 3 C -0.17 -2.57 9.70 22.28 0.22 -2.35 16 4 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 5 C -0.23 -4.67 9.04 22.36 0.20 -4.46 16 6 C 0.11 2.67 6.69 22.51 0.15 2.82 16 7 O -0.33 -8.58 10.14 -92.52 -0.94 -9.51 16 8 C 0.07 1.60 4.74 71.98 0.34 1.94 16 9 C -0.09 -2.36 5.59 30.59 0.17 -2.19 16 10 C -0.07 -2.34 5.94 71.98 0.43 -1.91 16 11 S -0.32 -13.97 21.66 -56.49 -1.22 -15.19 16 12 C 0.09 5.05 5.70 71.24 0.41 5.46 16 13 C -0.54 -31.08 9.13 25.60 0.23 -30.84 16 14 H 0.06 3.55 7.71 -2.91 -0.02 3.53 16 15 C 0.01 0.75 5.46 84.65 0.46 1.22 16 16 N -0.92 -54.45 13.29 21.45 0.28 -54.17 16 17 Si 0.98 43.87 29.54 68.60 2.03 45.90 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 C -0.17 -3.69 9.64 22.37 0.22 -3.47 16 22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 24 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 25 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 26 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 27 H 0.14 2.44 6.30 -2.91 -0.02 2.42 16 28 H 0.08 1.53 7.66 -2.39 -0.02 1.51 16 29 H 0.08 1.53 7.66 -2.38 -0.02 1.51 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 37 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.36 328.47 4.82 -60.53 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.03 Total: 8.89 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 3.65 Total: -36.45 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.28 Total: -54.17 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.94 Total: -9.51 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -13.97 SS G_CDS: -1.22 Total: -15.19 kcal Total: -65.36 4.82 -60.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.741 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds