Wall clock time and date at job start Mon Mar 30 2020 07:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47111 * 2 1 4 4 O 1.42905 * 109.47055 * 240.00133 * 2 1 3 5 5 C 1.50705 * 109.47072 * 120.00259 * 2 1 3 6 6 C 1.38321 * 119.95858 * 85.01649 * 5 2 1 7 7 C 1.38280 * 120.15849 * 180.02562 * 6 5 2 8 8 C 1.38107 * 120.08118 * 359.68609 * 7 6 5 9 9 C 1.38950 * 119.91428 * 0.56754 * 8 7 6 10 10 S 1.76206 * 120.07810 * 179.72034 * 9 8 7 11 11 C 1.81401 * 102.99841 * 359.73334 * 10 9 8 12 12 C 1.52997 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47019 * 120.00329 * 18 16 14 21 21 H 1.48498 * 109.47326 * 240.00104 * 18 16 14 22 22 C 1.38059 * 119.95600 * 265.00069 * 5 2 1 23 23 H 1.08995 * 109.47107 * 300.00116 * 1 2 3 24 24 H 1.08997 * 109.47338 * 59.99649 * 1 2 3 25 25 H 1.09002 * 109.47376 * 180.02562 * 1 2 3 26 26 H 0.96701 * 113.99761 * 299.99928 * 4 2 1 27 27 H 1.07999 * 119.92253 * 0.02562 * 6 5 2 28 28 H 1.08000 * 119.96040 * 179.97438 * 7 6 5 29 29 H 1.08001 * 120.04282 * 180.29920 * 8 7 6 30 30 H 1.09002 * 109.47085 * 299.99758 * 11 10 9 31 31 H 1.09001 * 109.47417 * 59.99884 * 11 10 9 32 32 H 1.09002 * 109.47153 * 299.99990 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99620 * 12 11 10 34 34 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 35 35 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 36 36 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.07992 * 120.04487 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7105 1.2305 6 6 2.1644 -2.0874 1.2275 7 6 2.6245 -2.7436 2.3544 8 6 2.9599 -2.0251 3.4852 9 6 2.8235 -0.6424 3.4935 10 16 3.2432 0.2778 4.9364 11 6 3.7771 -1.0080 6.0993 12 6 4.1825 -0.3603 7.4249 13 6 4.6322 -1.4447 8.4059 14 6 5.0320 -0.8068 9.7114 15 1 4.9711 0.2650 9.8296 16 6 5.4747 -1.5914 10.7551 17 7 5.5485 -2.8966 10.6113 18 14 5.9710 -0.8004 12.3730 19 1 5.7977 0.6714 12.2782 20 1 5.1159 -1.3298 13.4657 21 1 7.3935 -1.1142 12.6616 22 6 2.3604 0.0138 2.3591 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.7210 -1.5952 -1.2329 27 1 1.9077 -2.6513 0.3430 28 1 2.7260 -3.8188 2.3487 29 1 3.3237 -2.5379 4.3634 30 1 2.9574 -1.7056 6.2711 31 1 4.6293 -1.5444 5.6819 32 1 5.0023 0.3371 7.2528 33 1 3.3307 0.1764 7.8426 34 1 3.8120 -2.1418 8.5780 35 1 5.4840 -1.9817 7.9885 36 1 5.8603 -3.4485 11.3455 37 1 2.2577 1.0888 2.3605 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082761874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:17 Heat of formation + Delta-G solvation = -54.315914 kcal Electronic energy + Delta-G solvation = -16739.794769 eV Core-core repulsion = 13993.081462 eV Total energy + Delta-G solvation = -2746.713307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76873 -37.19103 -34.58742 -32.45514 -32.04223 -31.07740 -29.54898 -27.54963 -24.24988 -23.73347 -22.66615 -21.36264 -20.35546 -18.10838 -16.60608 -16.23517 -16.06723 -15.99653 -14.78894 -14.75041 -14.54677 -14.45952 -14.02194 -13.66763 -13.50012 -12.68573 -12.59987 -12.33256 -12.08128 -11.91121 -11.84608 -11.58277 -11.23372 -10.94252 -10.91630 -10.57420 -10.42697 -10.01862 -9.92012 -9.70199 -9.40150 -9.15594 -8.96301 -8.41563 -7.30147 -6.06308 -4.09061 1.08729 1.20525 1.69237 2.64696 3.28285 3.35933 3.40402 3.49946 4.09995 4.32014 4.41758 4.65385 4.77879 4.90120 4.91801 5.13726 5.29109 5.29643 5.35994 5.40446 5.45092 5.50268 5.67744 5.77632 5.82058 5.98425 6.18155 6.24750 6.34048 6.43633 6.59742 6.74571 6.92343 7.24993 7.57283 7.68246 7.92144 8.33302 8.97439 9.55588 11.05078 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.055352 B = 0.002910 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.735260 B = 9619.056461 C = 9959.733356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.145 3.855 3 H 0.108 0.892 4 O -0.557 6.557 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.095 4.095 8 C -0.134 4.134 9 C -0.070 4.070 10 S -0.133 6.133 11 C -0.094 4.094 12 C -0.096 4.096 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.098 4.098 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.373 0.627 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 2.269 -20.781 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.126 0.874 4 O -0.363 6.363 5 C -0.104 4.104 6 C -0.149 4.149 7 C -0.114 4.114 8 C -0.158 4.158 9 C -0.184 4.184 10 S 0.115 5.885 11 C -0.242 4.242 12 C -0.135 4.135 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.122 4.122 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.222 0.778 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.984 3.933 -20.482 22.709 hybrid contribution 0.086 -1.687 0.928 1.928 sum -8.898 2.245 -19.554 21.601 Atomic orbital electron populations 1.22483 0.95292 1.02931 1.03043 1.20800 0.93059 0.96012 0.81578 0.87437 1.86627 1.77347 1.29165 1.43192 1.20414 0.99804 0.94376 0.95826 1.20760 1.02095 0.93606 0.98397 1.21018 0.97918 0.99827 0.92666 1.21339 1.02157 0.92745 0.99604 1.21913 1.01827 0.96476 0.98142 1.85575 1.80445 1.16438 1.06081 1.23967 1.03724 0.98541 0.97991 1.21496 1.00749 1.00224 0.91038 1.19104 0.96530 0.92907 0.92579 1.21241 1.43702 0.93594 0.97413 0.92447 1.25026 0.95646 0.94833 0.98940 1.69970 1.47242 1.03903 1.32343 0.86508 0.78198 0.79597 0.83558 1.19660 1.20961 1.20948 1.20525 1.00622 0.99599 0.91440 0.91145 0.91425 0.92086 0.77846 0.86324 0.85637 0.85328 0.89758 0.89746 0.92164 0.92183 0.96333 0.96326 0.92966 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.52 37.16 0.35 -0.89 16 2 C 0.14 1.24 3.83 -27.88 -0.11 1.13 16 3 H 0.11 0.90 8.05 -51.93 -0.42 0.48 16 4 O -0.56 -4.98 13.14 -35.23 -0.46 -5.44 16 5 C -0.10 -1.07 5.00 -104.65 -0.52 -1.59 16 6 C -0.13 -1.26 9.33 -39.54 -0.37 -1.63 16 7 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 8 C -0.13 -1.77 9.36 -39.37 -0.37 -2.14 16 9 C -0.07 -0.98 6.11 -39.04 -0.24 -1.22 16 10 S -0.13 -2.04 21.92 -107.50 -2.36 -4.40 16 11 C -0.09 -1.58 4.33 37.16 0.16 -1.42 16 12 C -0.10 -1.93 5.16 -26.74 -0.14 -2.07 16 13 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.10 -1.19 9.42 -39.37 -0.37 -1.56 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.37 2.06 7.39 45.56 0.34 2.39 16 27 H 0.12 0.81 6.60 -52.49 -0.35 0.47 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.69 5.88 -52.49 -0.31 1.38 16 30 H 0.08 1.37 7.76 -51.92 -0.40 0.97 16 31 H 0.08 1.38 7.74 -51.92 -0.40 0.98 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -30.85 323.43 -9.67 -40.52 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.89 Total: -0.53 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.55 Total: -25.63 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.46 Total: -5.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.36 Total: -4.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.85 -9.67 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082761874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.800 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds