Wall clock time and date at job start Mon Mar 30 2020 07:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47111 * 2 1 4 4 O 1.42905 * 109.47055 * 240.00133 * 2 1 3 5 5 C 1.50705 * 109.47072 * 120.00259 * 2 1 3 6 6 C 1.38321 * 119.95858 * 85.01649 * 5 2 1 7 7 C 1.38280 * 120.15849 * 180.02562 * 6 5 2 8 8 C 1.38107 * 120.08118 * 359.68609 * 7 6 5 9 9 C 1.38950 * 119.91428 * 0.56754 * 8 7 6 10 10 S 1.76206 * 120.07810 * 179.72034 * 9 8 7 11 11 C 1.81401 * 102.99841 * 359.73334 * 10 9 8 12 12 C 1.52997 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47019 * 120.00329 * 18 16 14 21 21 H 1.48498 * 109.47326 * 240.00104 * 18 16 14 22 22 C 1.38059 * 119.95600 * 265.00069 * 5 2 1 23 23 H 1.08995 * 109.47107 * 300.00116 * 1 2 3 24 24 H 1.08997 * 109.47338 * 59.99649 * 1 2 3 25 25 H 1.09002 * 109.47376 * 180.02562 * 1 2 3 26 26 H 0.96701 * 113.99761 * 299.99928 * 4 2 1 27 27 H 1.07999 * 119.92253 * 0.02562 * 6 5 2 28 28 H 1.08000 * 119.96040 * 179.97438 * 7 6 5 29 29 H 1.08001 * 120.04282 * 180.29920 * 8 7 6 30 30 H 1.09002 * 109.47085 * 299.99758 * 11 10 9 31 31 H 1.09001 * 109.47417 * 59.99884 * 11 10 9 32 32 H 1.09002 * 109.47153 * 299.99990 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99620 * 12 11 10 34 34 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 35 35 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 36 36 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.07992 * 120.04487 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7105 1.2305 6 6 2.1644 -2.0874 1.2275 7 6 2.6245 -2.7436 2.3544 8 6 2.9599 -2.0251 3.4852 9 6 2.8235 -0.6424 3.4935 10 16 3.2432 0.2778 4.9364 11 6 3.7771 -1.0080 6.0993 12 6 4.1825 -0.3603 7.4249 13 6 4.6322 -1.4447 8.4059 14 6 5.0320 -0.8068 9.7114 15 1 4.9711 0.2650 9.8296 16 6 5.4747 -1.5914 10.7551 17 7 5.5485 -2.8966 10.6113 18 14 5.9710 -0.8004 12.3730 19 1 5.7977 0.6714 12.2782 20 1 5.1159 -1.3298 13.4657 21 1 7.3935 -1.1142 12.6616 22 6 2.3604 0.0138 2.3591 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.7210 -1.5952 -1.2329 27 1 1.9077 -2.6513 0.3430 28 1 2.7260 -3.8188 2.3487 29 1 3.3237 -2.5379 4.3634 30 1 2.9574 -1.7056 6.2711 31 1 4.6293 -1.5444 5.6819 32 1 5.0023 0.3371 7.2528 33 1 3.3307 0.1764 7.8426 34 1 3.8120 -2.1418 8.5780 35 1 5.4840 -1.9817 7.9885 36 1 5.8603 -3.4485 11.3455 37 1 2.2577 1.0888 2.3605 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082761874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:16 Heat of formation + Delta-G solvation = -71.901697 kcal Electronic energy + Delta-G solvation = -16740.557346 eV Core-core repulsion = 13993.081462 eV Total energy + Delta-G solvation = -2747.475884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58788 -37.92400 -36.44332 -34.14907 -33.11030 -31.97134 -30.33849 -29.36682 -25.61420 -24.85734 -23.81874 -22.16720 -22.06992 -18.97795 -18.53823 -17.30428 -16.98889 -16.81954 -16.57123 -16.31847 -15.60848 -15.27754 -15.03529 -14.57905 -14.43813 -14.41168 -13.77712 -13.67994 -13.28161 -13.07160 -12.85049 -12.81798 -12.78291 -12.46054 -12.29916 -11.90670 -11.72870 -11.48037 -11.25015 -11.16383 -11.04944 -10.68379 -10.58846 -9.83926 -8.45184 -8.23303 -6.34276 0.17479 0.31218 0.49322 1.39514 1.39967 1.42434 1.53412 2.39626 2.62379 3.10496 3.51459 3.56375 3.88074 3.91808 3.96739 4.08102 4.13722 4.25172 4.32800 4.46283 4.54484 4.68354 4.73899 4.82552 4.88549 4.96427 5.01167 5.08308 5.22334 5.26828 5.40070 5.45978 5.50063 5.63789 5.79322 5.89408 6.19321 6.77969 6.81497 7.35194 8.88751 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.055352 B = 0.002910 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.735260 B = 9619.056461 C = 9959.733356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.148 3.852 3 H 0.107 0.893 4 O -0.570 6.570 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.098 4.098 8 C -0.153 4.153 9 C -0.091 4.091 10 S -0.140 6.140 11 C -0.086 4.086 12 C -0.082 4.082 13 C 0.031 3.969 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.106 4.106 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.388 0.612 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.060 0.940 34 H -0.002 1.002 35 H -0.003 1.003 36 H 0.265 0.735 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 2.597 -22.213 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.089 3.911 3 H 0.125 0.875 4 O -0.378 6.378 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.177 4.177 9 C -0.204 4.204 10 S 0.106 5.894 11 C -0.234 4.234 12 C -0.121 4.121 13 C -0.008 4.008 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.130 4.130 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.239 0.761 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.711 4.251 -21.933 24.360 hybrid contribution 0.265 -1.843 1.213 2.222 sum -9.445 2.407 -20.720 22.898 Atomic orbital electron populations 1.22436 0.93874 1.03599 1.03337 1.20789 0.94006 0.95707 0.80573 0.87548 1.86612 1.77685 1.30506 1.42988 1.20714 0.98841 0.94859 0.95869 1.21210 1.00159 0.93615 0.99119 1.21334 0.97249 1.01033 0.92159 1.21436 1.03131 0.92698 1.00434 1.21911 1.03917 0.96776 0.97764 1.85415 1.81167 1.15870 1.06966 1.23654 1.03876 0.98851 0.97034 1.21194 1.00572 0.98592 0.91735 1.18972 0.94934 0.93686 0.93174 1.21683 1.43812 0.93960 0.98765 0.92175 1.25962 0.95518 0.95354 1.02875 1.70089 1.48062 1.05381 1.33686 0.85394 0.77942 0.78974 0.78726 1.18674 1.20269 1.20294 1.20708 1.00603 1.00232 0.91494 0.91445 0.90551 0.91254 0.76126 0.82756 0.83385 0.86197 0.89608 0.89717 0.92216 0.92155 0.98382 0.98439 0.92666 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.52 71.98 0.69 -1.27 16 2 C 0.15 2.17 3.83 29.85 0.11 2.28 16 3 H 0.11 1.58 8.05 -2.39 -0.02 1.56 16 4 O -0.57 -8.47 13.14 -148.98 -1.96 -10.43 16 5 C -0.10 -1.88 5.00 -19.89 -0.10 -1.98 16 6 C -0.12 -2.02 9.33 22.30 0.21 -1.81 16 7 C -0.10 -1.96 10.04 22.25 0.22 -1.74 16 8 C -0.15 -3.96 9.36 22.41 0.21 -3.75 16 9 C -0.09 -2.50 6.11 22.62 0.14 -2.36 16 10 S -0.14 -4.34 21.92 -56.49 -1.24 -5.58 16 11 C -0.09 -2.97 4.33 71.98 0.31 -2.66 16 12 C -0.08 -3.39 5.16 30.59 0.16 -3.23 16 13 C 0.03 1.63 4.97 29.84 0.15 1.78 16 14 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 18 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.11 -2.48 9.42 22.41 0.21 -2.27 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.39 2.85 7.39 -74.06 -0.55 2.30 16 27 H 0.15 1.43 6.60 -2.91 -0.02 1.41 16 28 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.12 3.22 5.88 -2.91 -0.02 3.20 16 30 H 0.09 2.89 7.76 -2.39 -0.02 2.87 16 31 H 0.08 2.87 7.74 -2.39 -0.02 2.86 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -66.43 323.43 2.63 -63.80 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.51 Total: 9.25 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 3.00 Total: -47.22 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.96 Total: -10.43 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -1.24 Total: -5.58 kcal Total: -66.43 2.63 -63.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082761874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.100 kcal (2) G-P(sol) polarization free energy of solvation -66.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds