Wall clock time and date at job start Mon Mar 30 2020 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46620 * 2 1 4 4 O 1.42889 * 109.46984 * 119.99963 * 2 1 3 5 5 C 1.50706 * 109.46870 * 239.99980 * 2 1 3 6 6 C 1.38323 * 119.96057 * 279.97180 * 5 2 1 7 7 C 1.38270 * 120.16076 * 180.02562 * 6 5 2 8 8 C 1.38109 * 120.08149 * 0.02562 * 7 6 5 9 9 C 1.38952 * 119.91604 * 359.79280 * 8 7 6 10 10 S 1.76200 * 120.07987 * 180.22906 * 9 8 7 11 11 C 1.81406 * 102.99867 * 0.20948 * 10 9 8 12 12 C 1.53003 * 109.47011 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47216 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00444 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99386 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00428 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46844 * 59.99644 * 18 16 14 20 20 H 1.48494 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47029 * 300.00039 * 18 16 14 22 22 C 1.38062 * 119.95677 * 100.00514 * 5 2 1 23 23 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47179 * 300.00153 * 1 2 3 25 25 H 1.09004 * 109.46849 * 60.00153 * 1 2 3 26 26 H 0.96699 * 114.00346 * 60.00177 * 4 2 1 27 27 H 1.08006 * 119.91604 * 0.03496 * 6 5 2 28 28 H 1.08006 * 119.96430 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.04034 * 180.02562 * 8 7 6 30 30 H 1.08997 * 109.46889 * 299.99735 * 11 10 9 31 31 H 1.08998 * 109.47415 * 60.00058 * 11 10 9 32 32 H 1.08997 * 109.47030 * 299.99591 * 12 11 10 33 33 H 1.08998 * 109.47031 * 59.99765 * 12 11 10 34 34 H 1.09002 * 109.47217 * 300.00012 * 13 12 11 35 35 H 1.08999 * 109.47010 * 59.99667 * 13 12 11 36 36 H 0.97003 * 119.99744 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.03991 * 359.94389 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0324 -0.7105 -1.2305 6 6 2.0669 -2.0928 -1.2643 7 6 2.5275 -2.7489 -2.3910 8 6 2.9553 -2.0255 -3.4869 9 6 2.9185 -0.6368 -3.4579 10 16 3.4576 0.2903 -4.8560 11 6 3.9438 -0.9979 -6.0370 12 6 4.4448 -0.3447 -7.3267 13 6 4.8555 -1.4312 -8.3225 14 6 5.3484 -0.7878 -9.5930 15 1 5.3673 0.2885 -9.6812 16 6 5.7763 -1.5730 -10.6425 17 7 5.7538 -2.8836 -10.5348 18 14 6.3879 -0.7755 -12.2170 19 1 7.5586 0.0862 -11.9130 20 1 6.7864 -1.8300 -13.1836 21 1 5.3044 0.0515 -12.8062 22 6 2.4581 0.0193 -2.3224 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -1.5952 1.2329 27 1 1.7332 -2.6611 -0.4086 28 1 2.5527 -3.8284 -2.4141 29 1 3.3145 -2.5387 -4.3667 30 1 4.7392 -1.6053 -5.6051 31 1 3.0842 -1.6300 -6.2597 32 1 3.6497 0.2629 -7.7588 33 1 5.3046 0.2871 -7.1037 34 1 5.6508 -2.0385 -7.8902 35 1 3.9960 -2.0633 -8.5455 36 1 6.0552 -3.4360 -11.2730 37 1 2.4304 1.0987 -2.2955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082761875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:19 Heat of formation + Delta-G solvation = -54.465523 kcal Electronic energy + Delta-G solvation = -16737.511227 eV Core-core repulsion = 13990.791432 eV Total energy + Delta-G solvation = -2746.719795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76472 -37.18919 -34.58512 -32.44966 -32.03832 -31.08811 -29.54550 -27.54573 -24.25139 -23.74323 -22.65830 -21.36379 -20.35242 -18.08920 -16.60208 -16.24857 -16.05417 -15.99819 -14.78542 -14.75002 -14.55954 -14.45262 -14.02235 -13.64175 -13.52833 -12.68357 -12.59256 -12.33624 -12.08368 -11.91141 -11.85110 -11.58487 -11.22084 -10.92534 -10.90209 -10.61213 -10.41924 -10.01636 -9.91326 -9.70282 -9.39656 -9.18030 -8.97186 -8.40661 -7.30127 -6.05824 -4.08768 1.08359 1.20484 1.69249 2.64723 3.31053 3.35307 3.38083 3.49704 4.11764 4.32141 4.41924 4.64172 4.77956 4.90174 4.91429 5.13485 5.28870 5.29886 5.36093 5.40466 5.45302 5.50248 5.67564 5.77552 5.81887 5.98482 6.18102 6.24686 6.33972 6.43749 6.59802 6.74494 6.92404 7.25498 7.57050 7.68476 7.92304 8.33499 8.97218 9.55709 11.05484 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.055446 B = 0.002907 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.876354 B = 9628.752320 C = 9959.903036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.145 3.855 3 H 0.107 0.893 4 O -0.557 6.557 5 C -0.102 4.102 6 C -0.127 4.127 7 C -0.095 4.095 8 C -0.134 4.134 9 C -0.071 4.071 10 S -0.133 6.133 11 C -0.094 4.094 12 C -0.096 4.096 13 C 0.029 3.971 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.097 4.097 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.373 0.627 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 2.205 20.521 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 H 0.125 0.875 4 O -0.363 6.363 5 C -0.104 4.104 6 C -0.148 4.148 7 C -0.114 4.114 8 C -0.158 4.158 9 C -0.184 4.184 10 S 0.115 5.885 11 C -0.242 4.242 12 C -0.135 4.135 13 C -0.010 4.010 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.121 4.121 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.221 0.779 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.486 3.865 20.254 22.696 hybrid contribution 0.028 -1.664 -0.944 1.914 sum -9.458 2.200 19.310 21.614 Atomic orbital electron populations 1.22488 0.95327 1.02918 1.03028 1.20803 0.93052 0.96005 0.81586 0.87480 1.86624 1.77372 1.29146 1.43160 1.20413 0.99644 0.94319 0.96062 1.20762 1.02112 0.93559 0.98415 1.21016 0.97729 0.99835 0.92869 1.21341 1.02003 0.92648 0.99818 1.21916 1.01795 0.96432 0.98239 1.85576 1.78430 1.15808 1.08718 1.23967 1.03895 0.98522 0.97836 1.21500 1.00227 1.00195 0.91593 1.19093 0.96647 0.92879 0.92419 1.21168 1.42879 0.93074 0.99003 0.92553 1.25020 0.95727 0.94832 0.98808 1.69952 1.47534 1.03588 1.32397 0.86616 0.79330 0.78941 0.82906 1.20155 1.21244 1.20168 1.20545 1.00218 0.99590 0.91754 0.92088 0.91432 0.91160 0.77860 0.86353 0.85636 0.85323 0.89745 0.89757 0.92179 0.92168 0.96334 0.96347 0.92850 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.51 37.16 0.35 -0.89 16 2 C 0.14 1.24 3.83 -27.88 -0.11 1.13 16 3 H 0.11 0.90 8.00 -51.93 -0.42 0.48 16 4 O -0.56 -5.01 13.19 -35.23 -0.46 -5.48 16 5 C -0.10 -1.07 4.97 -104.65 -0.52 -1.59 16 6 C -0.13 -1.25 9.32 -39.54 -0.37 -1.62 16 7 C -0.09 -1.04 10.04 -39.62 -0.40 -1.44 16 8 C -0.13 -1.76 9.36 -39.36 -0.37 -2.13 16 9 C -0.07 -0.99 6.11 -39.04 -0.24 -1.22 16 10 S -0.13 -2.05 21.92 -107.50 -2.36 -4.40 16 11 C -0.09 -1.59 4.33 37.16 0.16 -1.43 16 12 C -0.10 -1.94 5.16 -26.73 -0.14 -2.07 16 13 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.10 -1.18 9.41 -39.37 -0.37 -1.56 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.37 2.08 7.50 45.56 0.34 2.42 16 27 H 0.12 0.80 6.78 -52.48 -0.36 0.45 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 29 H 0.13 1.69 5.88 -52.49 -0.31 1.38 16 30 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 31 H 0.08 1.37 7.76 -51.93 -0.40 0.97 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 1.39 8.03 -52.49 -0.42 0.97 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -30.83 323.64 -9.66 -40.49 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.89 Total: -0.46 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -2.54 Total: -25.63 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.46 Total: -5.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.36 Total: -4.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.83 -9.66 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082761875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.979 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds