Wall clock time and date at job start Mon Mar 30 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 H 1.09000 * 109.46825 * 54.51025 * 3 2 1 5 5 C 1.50698 * 109.46824 * 174.51198 * 3 2 1 6 6 H 1.07996 * 120.00616 * 120.00126 * 5 3 2 7 7 C 1.37888 * 119.99992 * 299.99656 * 5 3 2 8 8 N 1.31517 * 119.99781 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99814 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47387 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46707 * 120.00333 * 9 7 5 12 12 H 1.48498 * 109.47056 * 239.99938 * 9 7 5 13 13 S 1.81400 * 109.47112 * 294.50848 * 3 2 1 14 14 O 1.42096 * 109.46935 * 299.44504 * 13 3 2 15 15 C 1.81396 * 102.99965 * 183.05552 * 13 3 2 16 16 C 1.50693 * 109.47429 * 184.92396 * 15 13 3 17 17 C 1.38264 * 120.00358 * 270.02740 * 16 15 13 18 18 C 1.38209 * 120.00244 * 179.97438 * 17 16 15 19 19 C 1.38259 * 119.99834 * 359.80626 * 18 17 16 20 20 C 1.38208 * 120.00132 * 0.42274 * 19 18 17 21 21 C 1.50703 * 120.00052 * 179.81269 * 20 19 18 22 22 C 1.38210 * 120.00093 * 90.00028 * 16 15 13 23 23 H 1.09003 * 109.47010 * 65.46978 * 1 2 3 24 24 H 1.08997 * 109.47696 * 185.47257 * 1 2 3 25 25 H 1.08995 * 109.47089 * 305.47743 * 1 2 3 26 26 H 1.09002 * 109.46822 * 239.99835 * 2 1 3 27 27 H 1.08993 * 109.46812 * 120.00249 * 2 1 3 28 28 H 0.96997 * 119.99791 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46999 * 64.92404 * 15 13 3 30 30 H 1.09004 * 109.47195 * 304.92744 * 15 13 3 31 31 H 1.07997 * 119.99722 * 359.97438 * 17 16 15 32 32 H 1.07997 * 120.00190 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.99523 * 180.23560 * 19 18 17 34 34 H 1.09007 * 109.46715 * 269.72369 * 21 20 19 35 35 H 1.08990 * 109.47130 * 29.72443 * 21 20 19 36 36 H 1.09001 * 109.47180 * 149.73235 * 21 20 19 37 37 H 1.08007 * 120.00176 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9839 0.8368 5 6 3.5409 1.4446 0.1359 6 1 4.1525 1.8869 -0.6365 7 6 4.1334 0.8818 1.2465 8 7 3.3886 0.3428 2.1870 9 14 5.9937 0.8850 1.4153 10 1 6.5970 1.5476 0.2312 11 1 6.3779 1.6240 2.6448 12 1 6.4851 -0.5135 1.5044 13 16 1.5727 2.2491 -1.5562 14 8 2.1587 1.5507 -2.6462 15 6 2.3332 3.8894 -1.4100 16 6 1.9310 4.7366 -2.5896 17 6 2.7027 4.7353 -3.7368 18 6 2.3335 5.5119 -4.8189 19 6 1.1903 6.2869 -4.7555 20 6 0.4215 6.2918 -3.6070 21 6 -0.8223 7.1399 -3.5365 22 6 0.7904 5.5144 -2.5249 23 1 -0.3633 0.4267 -0.9349 24 1 -0.3634 -1.0229 0.0980 25 1 -0.3633 0.5964 0.8368 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8054 -0.0528 2.9685 29 1 3.4182 3.7864 -1.3898 30 1 1.9962 4.3654 -0.4891 31 1 3.5940 4.1275 -3.7874 32 1 2.9360 5.5106 -5.7151 33 1 0.8998 6.8908 -5.6025 34 1 -0.5682 8.1257 -3.1469 35 1 -1.2492 7.2424 -4.5341 36 1 -1.5490 6.6650 -2.8773 37 1 0.1870 5.5148 -1.6290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084256507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:07 Heat of formation + Delta-G solvation = -36.828092 kcal Electronic energy + Delta-G solvation = -17862.323296 eV Core-core repulsion = 15116.368317 eV Total energy + Delta-G solvation = -2745.954978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.16785 -34.74812 -34.43854 -33.29678 -31.78998 -31.59925 -27.89778 -26.99515 -26.30039 -23.29807 -21.92957 -20.81007 -20.04525 -16.64054 -16.56551 -16.19170 -15.29297 -15.24300 -14.75997 -14.35909 -13.71577 -13.64648 -13.12232 -13.01517 -12.89370 -12.67212 -12.41925 -12.21755 -11.86402 -11.73061 -11.41522 -11.07375 -11.03081 -10.93423 -10.81063 -10.67525 -10.42741 -10.13044 -9.83845 -9.37864 -9.09025 -8.54420 -8.50836 -8.08878 -7.13889 -6.10439 -4.26006 1.48657 1.57898 2.75892 3.20563 3.29188 3.34211 3.76714 4.02753 4.32699 4.76645 4.94559 5.00119 5.12169 5.16974 5.33362 5.41648 5.58334 5.65793 5.77367 5.83526 5.91333 6.09541 6.13123 6.14822 6.32025 6.33461 6.47758 6.67977 6.72953 6.76087 6.89687 6.90838 7.01001 7.22710 7.43315 7.67461 7.74990 8.15014 8.74888 9.39977 10.89732 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.005572 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.302108 B = 5023.538348 C = 5617.297874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.228 4.228 4 H 0.078 0.922 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.074 3.926 8 N -0.878 5.878 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.281 1.281 13 S 1.191 4.809 14 O -0.860 6.860 15 C -0.403 4.403 16 C -0.042 4.042 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.121 4.121 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.103 0.897 28 H 0.262 0.738 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 10.808 -6.805 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.349 4.349 4 H 0.096 0.904 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.130 4.130 8 N -0.516 5.516 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.207 1.207 13 S 1.394 4.606 14 O -0.855 6.855 15 C -0.537 4.537 16 C -0.043 4.043 17 C -0.139 4.139 18 C -0.132 4.132 19 C -0.153 4.153 20 C -0.088 4.088 21 C -0.168 4.168 22 C -0.141 4.141 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.781 10.357 -7.399 16.053 hybrid contribution 3.489 -0.287 0.519 3.539 sum -6.293 10.070 -6.880 13.723 Atomic orbital electron populations 1.21975 0.98573 1.00624 1.00221 1.21330 0.91851 0.97709 1.03598 1.24814 1.01937 1.00629 1.07505 0.90402 1.20885 0.89558 1.39809 1.05676 0.92743 1.24925 0.98100 0.94476 0.95492 1.69854 1.34854 1.37699 1.09167 0.86579 0.85678 0.78051 0.78111 1.19788 1.20691 1.20698 1.69615 1.17109 0.86591 0.87266 1.93012 1.79125 1.68618 1.44788 1.26656 1.10304 1.16694 1.00010 1.19372 0.94666 0.95940 0.94315 1.21129 1.00301 0.99165 0.93332 1.21061 0.96988 0.96898 0.98225 1.20927 0.95885 1.00745 0.97764 1.19850 0.96992 0.97959 0.94029 1.20768 0.94774 0.98878 1.02429 1.20950 0.97064 0.97366 0.98683 0.94332 0.93799 0.92581 0.94230 0.87868 0.92790 0.88294 0.86440 0.86348 0.86418 0.86553 0.91472 0.91846 0.91349 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.65 37.16 0.36 -2.44 16 2 C -0.11 -2.44 5.24 -26.73 -0.14 -2.58 16 3 C -0.23 -5.32 2.25 -27.88 -0.06 -5.39 16 4 H 0.08 1.78 8.14 -51.92 -0.42 1.36 16 5 C -0.52 -14.18 8.08 -34.44 -0.28 -14.46 16 6 H 0.05 1.54 6.91 -52.49 -0.36 1.18 16 7 C 0.07 2.03 5.29 -17.81 -0.09 1.93 16 8 N -0.88 -24.22 11.29 55.43 0.63 -23.59 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 S 1.19 23.66 11.50 -107.50 -1.24 22.42 16 14 O -0.86 -21.98 18.13 -35.23 -0.64 -22.62 16 15 C -0.40 -7.25 5.60 36.00 0.20 -7.05 16 16 C -0.04 -0.69 5.14 -104.63 -0.54 -1.23 16 17 C -0.12 -2.02 9.70 -39.58 -0.38 -2.41 16 18 C -0.11 -1.60 10.05 -39.58 -0.40 -2.00 16 19 C -0.13 -1.69 9.70 -39.58 -0.38 -2.07 16 20 C -0.09 -1.09 5.88 -104.62 -0.62 -1.70 16 21 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 22 C -0.12 -1.66 9.36 -39.58 -0.37 -2.03 16 23 H 0.04 0.60 7.35 -51.93 -0.38 0.22 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 2.66 5.94 -51.93 -0.31 2.36 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.10 2.02 7.25 -51.92 -0.38 1.65 16 30 H 0.12 1.82 8.09 -51.92 -0.42 1.40 16 31 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -33.31 320.69 -9.41 -42.72 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.63 Total: 1.81 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: -2.34 Total: -42.04 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.63 Total: -23.59 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.64 Total: -22.62 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 23.66 SS G_CDS: -1.24 Total: 22.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.31 -9.41 -42.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.888 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds