Wall clock time and date at job start Mon Mar 30 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 H 1.09000 * 109.46825 * 54.51025 * 3 2 1 5 5 C 1.50698 * 109.46824 * 174.51198 * 3 2 1 6 6 H 1.07996 * 120.00616 * 120.00126 * 5 3 2 7 7 C 1.37888 * 119.99992 * 299.99656 * 5 3 2 8 8 N 1.31517 * 119.99781 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99814 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47387 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46707 * 120.00333 * 9 7 5 12 12 H 1.48498 * 109.47056 * 239.99938 * 9 7 5 13 13 S 1.81400 * 109.47112 * 294.50848 * 3 2 1 14 14 O 1.42096 * 109.46935 * 299.44504 * 13 3 2 15 15 C 1.81396 * 102.99965 * 183.05552 * 13 3 2 16 16 C 1.50693 * 109.47429 * 184.92396 * 15 13 3 17 17 C 1.38264 * 120.00358 * 270.02740 * 16 15 13 18 18 C 1.38209 * 120.00244 * 179.97438 * 17 16 15 19 19 C 1.38259 * 119.99834 * 359.80626 * 18 17 16 20 20 C 1.38208 * 120.00132 * 0.42274 * 19 18 17 21 21 C 1.50703 * 120.00052 * 179.81269 * 20 19 18 22 22 C 1.38210 * 120.00093 * 90.00028 * 16 15 13 23 23 H 1.09003 * 109.47010 * 65.46978 * 1 2 3 24 24 H 1.08997 * 109.47696 * 185.47257 * 1 2 3 25 25 H 1.08995 * 109.47089 * 305.47743 * 1 2 3 26 26 H 1.09002 * 109.46822 * 239.99835 * 2 1 3 27 27 H 1.08993 * 109.46812 * 120.00249 * 2 1 3 28 28 H 0.96997 * 119.99791 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46999 * 64.92404 * 15 13 3 30 30 H 1.09004 * 109.47195 * 304.92744 * 15 13 3 31 31 H 1.07997 * 119.99722 * 359.97438 * 17 16 15 32 32 H 1.07997 * 120.00190 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.99523 * 180.23560 * 19 18 17 34 34 H 1.09007 * 109.46715 * 269.72369 * 21 20 19 35 35 H 1.08990 * 109.47130 * 29.72443 * 21 20 19 36 36 H 1.09001 * 109.47180 * 149.73235 * 21 20 19 37 37 H 1.08007 * 120.00176 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9839 0.8368 5 6 3.5409 1.4446 0.1359 6 1 4.1525 1.8869 -0.6365 7 6 4.1334 0.8818 1.2465 8 7 3.3886 0.3428 2.1870 9 14 5.9937 0.8850 1.4153 10 1 6.5970 1.5476 0.2312 11 1 6.3779 1.6240 2.6448 12 1 6.4851 -0.5135 1.5044 13 16 1.5727 2.2491 -1.5562 14 8 2.1587 1.5507 -2.6462 15 6 2.3332 3.8894 -1.4100 16 6 1.9310 4.7366 -2.5896 17 6 2.7027 4.7353 -3.7368 18 6 2.3335 5.5119 -4.8189 19 6 1.1903 6.2869 -4.7555 20 6 0.4215 6.2918 -3.6070 21 6 -0.8223 7.1399 -3.5365 22 6 0.7904 5.5144 -2.5249 23 1 -0.3633 0.4267 -0.9349 24 1 -0.3634 -1.0229 0.0980 25 1 -0.3633 0.5964 0.8368 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8054 -0.0528 2.9685 29 1 3.4182 3.7864 -1.3898 30 1 1.9962 4.3654 -0.4891 31 1 3.5940 4.1275 -3.7874 32 1 2.9360 5.5106 -5.7151 33 1 0.8998 6.8908 -5.6025 34 1 -0.5682 8.1257 -3.1469 35 1 -1.2492 7.2424 -4.5341 36 1 -1.5490 6.6650 -2.8773 37 1 0.1870 5.5148 -1.6290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084256507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:06 Heat of formation + Delta-G solvation = -57.197427 kcal Electronic energy + Delta-G solvation = -17863.206576 eV Core-core repulsion = 15116.368317 eV Total energy + Delta-G solvation = -2746.838259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24944 -36.64812 -36.34668 -34.39849 -33.56623 -32.82651 -29.66128 -28.10204 -27.44978 -25.21000 -23.02939 -22.30912 -21.41046 -18.69673 -18.23542 -17.33975 -17.14526 -16.38587 -16.22303 -15.93323 -15.26097 -14.94882 -14.66032 -14.33528 -14.17153 -13.96182 -13.77031 -13.55949 -13.29264 -13.03987 -12.99364 -12.83292 -12.78733 -12.50083 -12.32871 -11.99766 -11.87424 -11.81183 -11.64351 -11.23662 -10.80298 -10.53514 -9.61698 -9.45574 -8.90887 -8.16629 -6.40210 0.29413 0.49853 1.22016 1.24880 1.28801 1.37639 2.07683 2.30922 2.90487 2.99306 3.18005 3.79793 3.91960 4.09114 4.28465 4.36660 4.52220 4.57634 4.58640 4.67691 4.72248 4.80549 4.91646 5.00276 5.06451 5.07188 5.25405 5.29122 5.35140 5.40875 5.44767 5.57120 5.70496 5.72261 5.74214 5.76899 6.17050 6.18288 6.67410 7.26652 8.79196 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.005572 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.302108 B = 5023.538348 C = 5617.297874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.244 4.244 4 H 0.086 0.914 5 C -0.542 4.542 6 H 0.029 0.971 7 C 0.034 3.966 8 N -0.892 5.892 9 Si 0.936 3.064 10 H -0.285 1.285 11 H -0.265 1.265 12 H -0.278 1.278 13 S 1.261 4.739 14 O -0.922 6.922 15 C -0.393 4.393 16 C -0.068 4.068 17 C -0.156 4.156 18 C -0.120 4.120 19 C -0.130 4.130 20 C -0.085 4.085 21 C -0.111 4.111 22 C -0.121 4.121 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.008 0.992 27 H 0.073 0.927 28 H 0.266 0.734 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 13.093 -7.028 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.364 4.364 4 H 0.104 0.896 5 C -0.581 4.581 6 H 0.048 0.952 7 C -0.168 4.168 8 N -0.530 5.530 9 Si 0.762 3.238 10 H -0.210 1.210 11 H -0.190 1.190 12 H -0.203 1.203 13 S 1.465 4.535 14 O -0.918 6.918 15 C -0.529 4.529 16 C -0.070 4.070 17 C -0.175 4.175 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.085 4.085 21 C -0.167 4.167 22 C -0.140 4.140 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.026 0.974 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.159 12.608 -7.603 19.094 hybrid contribution 4.226 -0.845 0.509 4.340 sum -7.932 11.763 -7.093 15.862 Atomic orbital electron populations 1.21913 0.94158 1.02366 1.02326 1.21211 0.95844 0.96832 1.00518 1.24957 0.99658 1.01615 1.10192 0.89609 1.21092 0.91831 1.39983 1.05161 0.95249 1.25504 1.01427 0.94428 0.95487 1.69924 1.35915 1.37822 1.09348 0.85852 0.81816 0.78102 0.78051 1.21003 1.18960 1.20343 1.68652 1.15639 0.85598 0.83593 1.92890 1.80643 1.70903 1.47324 1.26514 1.08037 1.15659 1.02694 1.19337 0.96588 0.97567 0.93461 1.21145 1.00332 1.00803 0.95235 1.21295 0.98062 0.96589 0.97883 1.21377 0.94650 0.99786 0.99011 1.20351 0.97886 0.97138 0.93079 1.20862 0.93109 0.98765 1.03985 1.21300 0.95921 0.96328 1.00429 0.92041 0.92306 0.90659 0.97355 0.90873 0.92493 0.91618 0.83586 0.89375 0.84798 0.83234 0.90080 0.90266 0.89945 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.65 71.98 0.69 -4.46 16 2 C -0.10 -4.95 5.24 30.60 0.16 -4.79 16 3 C -0.24 -11.64 2.25 29.85 0.07 -11.57 16 4 H 0.09 3.91 8.14 -2.39 -0.02 3.89 16 5 C -0.54 -30.63 8.08 25.60 0.21 -30.43 16 6 H 0.03 1.76 6.91 -2.91 -0.02 1.74 16 7 C 0.03 1.89 5.29 84.66 0.45 2.34 16 8 N -0.89 -49.89 11.29 21.45 0.24 -49.65 16 9 Si 0.94 45.03 29.54 68.60 2.03 47.06 16 10 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 S 1.26 50.72 11.50 -56.49 -0.65 50.07 16 14 O -0.92 -49.02 18.13 -148.98 -2.70 -51.73 16 15 C -0.39 -14.35 5.60 71.23 0.40 -13.95 16 16 C -0.07 -2.23 5.14 -19.87 -0.10 -2.33 16 17 C -0.16 -5.41 9.70 22.27 0.22 -5.20 16 18 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 19 C -0.13 -2.84 9.70 22.27 0.22 -2.62 16 20 C -0.08 -1.76 5.88 -19.87 -0.12 -1.88 16 21 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 22 C -0.12 -2.96 9.36 22.27 0.21 -2.75 16 23 H 0.06 1.81 7.35 -2.39 -0.02 1.79 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 3.88 5.94 -2.39 -0.01 3.87 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.06 2.85 7.25 -2.39 -0.02 2.83 16 30 H 0.15 4.37 8.09 -2.39 -0.02 4.35 16 31 H 0.09 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 36 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 37 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -75.84 320.69 3.28 -72.56 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.03 Total: 13.05 kcal Atomic # 6 Polarization: -84.70 SS G_CDS: 3.33 Total: -81.36 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.24 Total: -49.65 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -2.70 Total: -51.73 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.65 Total: 50.07 kcal Total: -75.84 3.28 -72.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -75.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds