Wall clock time and date at job start Mon Mar 30 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47202 * 2 1 4 4 H 1.09005 * 109.46760 * 305.37794 * 3 2 1 5 5 C 1.50695 * 109.47066 * 185.38472 * 3 2 1 6 6 H 1.08007 * 119.99996 * 239.99431 * 5 3 2 7 7 C 1.37880 * 120.00226 * 59.99812 * 5 3 2 8 8 N 1.31511 * 120.00117 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00143 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46908 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47260 * 119.99497 * 9 7 5 12 12 H 1.48496 * 109.47070 * 239.99703 * 9 7 5 13 13 S 1.81391 * 109.47375 * 65.37984 * 3 2 1 14 14 O 1.42100 * 109.47304 * 290.99936 * 13 3 2 15 15 C 1.81406 * 103.00133 * 174.61190 * 13 3 2 16 16 C 1.50697 * 109.47095 * 175.24963 * 15 13 3 17 17 C 1.38257 * 120.00128 * 270.02323 * 16 15 13 18 18 C 1.38217 * 120.00015 * 180.02562 * 17 16 15 19 19 C 1.38251 * 119.99970 * 359.76775 * 18 17 16 20 20 C 1.38216 * 119.99932 * 0.46639 * 19 18 17 21 21 C 1.50697 * 120.00299 * 179.78965 * 20 19 18 22 22 C 1.38214 * 120.00047 * 90.00245 * 16 15 13 23 23 H 1.09002 * 109.47325 * 293.37097 * 1 2 3 24 24 H 1.08997 * 109.46977 * 53.36993 * 1 2 3 25 25 H 1.08997 * 109.47083 * 173.36906 * 1 2 3 26 26 H 1.08999 * 109.47788 * 239.99696 * 2 1 3 27 27 H 1.09001 * 109.47295 * 119.99454 * 2 1 3 28 28 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46791 * 55.24935 * 15 13 3 30 30 H 1.09001 * 109.46945 * 295.25138 * 15 13 3 31 31 H 1.07995 * 119.99824 * 359.97438 * 17 16 15 32 32 H 1.08001 * 119.99852 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.00485 * 180.24770 * 19 18 17 34 34 H 1.09006 * 109.47034 * 269.72678 * 21 20 19 35 35 H 1.09002 * 109.46968 * 29.72217 * 21 20 19 36 36 H 1.09000 * 109.47970 * 149.71996 * 21 20 19 37 37 H 1.08009 * 119.99691 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9834 -0.8380 5 6 3.5410 1.4446 -0.1333 6 1 4.1513 1.8875 0.6400 7 6 4.1355 0.8811 -1.2425 8 7 3.3925 0.3414 -2.1839 9 14 5.9962 0.8843 -1.4081 10 1 6.5974 1.5478 -0.2233 11 1 6.4878 -0.5142 -1.4953 12 1 6.3824 1.6224 -2.6374 13 16 1.5699 2.2501 1.5547 14 8 0.1614 2.4356 1.5851 15 6 2.3898 3.8643 1.4403 16 6 1.9970 4.7121 2.6226 17 6 0.8850 5.5302 2.5476 18 6 0.5250 6.3082 3.6318 19 6 1.2742 6.2648 4.7929 20 6 2.3887 5.4507 4.8662 21 6 3.2081 5.4069 6.1301 22 6 2.7482 4.6717 3.7820 23 1 -0.3634 0.4077 0.9434 24 1 -0.3633 0.6131 -0.8247 25 1 -0.3633 -1.0208 -0.1187 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8107 -0.0547 -2.9644 29 1 2.0858 4.3617 0.5193 30 1 3.4707 3.7233 1.4373 31 1 0.2981 5.5619 1.6415 32 1 -0.3435 6.9476 3.5730 33 1 0.9907 6.8697 5.6414 34 1 3.9932 6.1615 6.0805 35 1 2.5650 5.6075 6.9871 36 1 3.6587 4.4202 6.2372 37 1 3.6165 4.0320 3.8409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084256511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:09 Heat of formation + Delta-G solvation = -35.832107 kcal Electronic energy + Delta-G solvation = -17872.701105 eV Core-core repulsion = 15126.789316 eV Total energy + Delta-G solvation = -2745.911789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.15578 -34.74483 -34.58188 -33.29574 -31.77970 -31.55084 -27.85487 -26.97925 -26.27729 -23.29232 -21.91197 -20.83887 -20.05170 -16.89541 -16.40089 -16.08238 -15.42106 -15.20024 -14.75434 -14.35544 -13.73476 -13.58362 -13.33899 -12.92533 -12.81291 -12.65377 -12.29287 -12.07448 -11.86756 -11.71123 -11.56447 -11.18872 -10.94060 -10.89827 -10.74882 -10.67241 -10.50818 -10.16688 -9.85270 -9.22114 -9.06920 -8.57858 -8.50771 -8.07289 -7.07839 -6.15363 -4.29647 1.49264 1.59589 2.66523 3.20181 3.29184 3.30579 3.73307 4.03797 4.28889 4.75168 4.95954 5.02698 5.11729 5.15329 5.33550 5.44045 5.60677 5.65571 5.78014 5.85137 5.90626 6.15852 6.17933 6.29056 6.32466 6.46085 6.48017 6.68051 6.74674 6.84173 6.90004 7.02327 7.04178 7.23773 7.41009 7.64000 7.76225 8.11158 8.72986 9.36675 10.89047 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.005870 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.746690 B = 4768.921523 C = 5635.142284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.216 4.216 4 H 0.045 0.955 5 C -0.511 4.511 6 H 0.071 0.929 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.894 3.106 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.285 1.285 13 S 1.185 4.815 14 O -0.874 6.874 15 C -0.396 4.396 16 C -0.044 4.044 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.120 4.120 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 6.519 12.343 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.139 4.139 3 C -0.338 4.338 4 H 0.063 0.937 5 C -0.550 4.550 6 H 0.089 0.911 7 C -0.133 4.133 8 N -0.516 5.516 9 Si 0.722 3.278 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.211 1.211 13 S 1.390 4.610 14 O -0.869 6.869 15 C -0.529 4.529 16 C -0.045 4.045 17 C -0.137 4.137 18 C -0.133 4.133 19 C -0.153 4.153 20 C -0.088 4.088 21 C -0.169 4.169 22 C -0.139 4.139 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.354 6.101 12.910 14.284 hybrid contribution 0.214 1.146 -2.358 2.630 sum 0.567 7.247 10.552 12.814 Atomic orbital electron populations 1.22087 0.98706 0.99754 1.01750 1.21301 0.91827 0.97182 1.03544 1.24722 1.02127 0.99976 1.07000 0.93699 1.20620 0.88356 1.39754 1.06306 0.91083 1.24977 0.98337 0.94592 0.95433 1.69893 1.35115 1.37411 1.09206 0.86494 0.85026 0.77997 0.78333 1.19219 1.20732 1.21061 1.69968 0.90835 0.91427 1.08781 1.92960 1.26994 1.82254 1.84716 1.26614 1.11355 1.15951 0.99029 1.19379 0.94819 0.95871 0.94429 1.21063 0.96893 0.96725 0.99034 1.21040 0.99500 0.99333 0.93397 1.20921 0.96068 1.00319 0.97974 1.19853 0.96163 0.96960 0.95839 1.20770 0.99132 1.02583 0.94382 1.20974 1.00307 1.00194 0.92417 0.92556 0.93838 0.94305 0.87771 0.93676 0.92731 0.89291 0.85408 0.86593 0.86477 0.86569 0.91454 0.91861 0.91311 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.36 37.16 0.35 -3.24 16 2 C -0.10 -2.27 5.24 -26.73 -0.14 -2.41 16 3 C -0.22 -5.09 2.27 -27.88 -0.06 -5.15 16 4 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 5 C -0.51 -12.33 8.06 -34.44 -0.28 -12.61 16 6 H 0.07 1.55 6.72 -52.48 -0.35 1.20 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.89 19.44 29.54 -169.99 -5.02 14.42 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 13 S 1.19 23.45 12.27 -107.50 -1.32 22.13 16 14 O -0.87 -20.86 15.97 -35.23 -0.56 -21.42 16 15 C -0.40 -7.10 5.55 36.00 0.20 -6.90 16 16 C -0.04 -0.73 5.13 -104.63 -0.54 -1.27 16 17 C -0.12 -1.98 9.70 -39.58 -0.38 -2.36 16 18 C -0.11 -1.64 10.05 -39.58 -0.40 -2.03 16 19 C -0.13 -1.73 9.70 -39.58 -0.38 -2.12 16 20 C -0.09 -1.13 5.88 -104.63 -0.62 -1.75 16 21 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 22 C -0.12 -1.72 9.36 -39.58 -0.37 -2.09 16 23 H 0.06 1.23 6.06 -51.93 -0.31 0.91 16 24 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 30 H 0.13 2.10 7.09 -51.92 -0.37 1.74 16 31 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -30.60 317.32 -9.39 -39.99 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.54 Total: 4.13 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: -2.35 Total: -40.91 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.63 Total: -23.13 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.56 Total: -21.42 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 23.45 SS G_CDS: -1.32 Total: 22.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.60 -9.39 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.161 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds