Wall clock time and date at job start Mon Mar 30 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47202 * 2 1 4 4 H 1.09005 * 109.46760 * 305.37794 * 3 2 1 5 5 C 1.50695 * 109.47066 * 185.38472 * 3 2 1 6 6 H 1.08007 * 119.99996 * 239.99431 * 5 3 2 7 7 C 1.37880 * 120.00226 * 59.99812 * 5 3 2 8 8 N 1.31511 * 120.00117 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00143 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46908 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47260 * 119.99497 * 9 7 5 12 12 H 1.48496 * 109.47070 * 239.99703 * 9 7 5 13 13 S 1.81391 * 109.47375 * 65.37984 * 3 2 1 14 14 O 1.42100 * 109.47304 * 290.99936 * 13 3 2 15 15 C 1.81406 * 103.00133 * 174.61190 * 13 3 2 16 16 C 1.50697 * 109.47095 * 175.24963 * 15 13 3 17 17 C 1.38257 * 120.00128 * 270.02323 * 16 15 13 18 18 C 1.38217 * 120.00015 * 180.02562 * 17 16 15 19 19 C 1.38251 * 119.99970 * 359.76775 * 18 17 16 20 20 C 1.38216 * 119.99932 * 0.46639 * 19 18 17 21 21 C 1.50697 * 120.00299 * 179.78965 * 20 19 18 22 22 C 1.38214 * 120.00047 * 90.00245 * 16 15 13 23 23 H 1.09002 * 109.47325 * 293.37097 * 1 2 3 24 24 H 1.08997 * 109.46977 * 53.36993 * 1 2 3 25 25 H 1.08997 * 109.47083 * 173.36906 * 1 2 3 26 26 H 1.08999 * 109.47788 * 239.99696 * 2 1 3 27 27 H 1.09001 * 109.47295 * 119.99454 * 2 1 3 28 28 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46791 * 55.24935 * 15 13 3 30 30 H 1.09001 * 109.46945 * 295.25138 * 15 13 3 31 31 H 1.07995 * 119.99824 * 359.97438 * 17 16 15 32 32 H 1.08001 * 119.99852 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.00485 * 180.24770 * 19 18 17 34 34 H 1.09006 * 109.47034 * 269.72678 * 21 20 19 35 35 H 1.09002 * 109.46968 * 29.72217 * 21 20 19 36 36 H 1.09000 * 109.47970 * 149.71996 * 21 20 19 37 37 H 1.08009 * 119.99691 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9834 -0.8380 5 6 3.5410 1.4446 -0.1333 6 1 4.1513 1.8875 0.6400 7 6 4.1355 0.8811 -1.2425 8 7 3.3925 0.3414 -2.1839 9 14 5.9962 0.8843 -1.4081 10 1 6.5974 1.5478 -0.2233 11 1 6.4878 -0.5142 -1.4953 12 1 6.3824 1.6224 -2.6374 13 16 1.5699 2.2501 1.5547 14 8 0.1614 2.4356 1.5851 15 6 2.3898 3.8643 1.4403 16 6 1.9970 4.7121 2.6226 17 6 0.8850 5.5302 2.5476 18 6 0.5250 6.3082 3.6318 19 6 1.2742 6.2648 4.7929 20 6 2.3887 5.4507 4.8662 21 6 3.2081 5.4069 6.1301 22 6 2.7482 4.6717 3.7820 23 1 -0.3634 0.4077 0.9434 24 1 -0.3633 0.6131 -0.8247 25 1 -0.3633 -1.0208 -0.1187 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8107 -0.0547 -2.9644 29 1 2.0858 4.3617 0.5193 30 1 3.4707 3.7233 1.4373 31 1 0.2981 5.5619 1.6415 32 1 -0.3435 6.9476 3.5730 33 1 0.9907 6.8697 5.6414 34 1 3.9932 6.1615 6.0805 35 1 2.5650 5.6075 6.9871 36 1 3.6587 4.4202 6.2372 37 1 3.6165 4.0320 3.8409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084256511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:09 Heat of formation + Delta-G solvation = -53.014622 kcal Electronic energy + Delta-G solvation = -17873.446194 eV Core-core repulsion = 15126.789316 eV Total energy + Delta-G solvation = -2746.656879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25221 -36.58817 -36.43210 -34.41402 -33.48769 -32.82554 -29.62241 -28.11713 -27.44780 -25.18738 -23.02900 -22.40936 -21.41837 -18.71624 -18.02148 -17.32978 -17.14839 -16.40187 -16.16607 -15.88651 -15.25241 -15.00847 -14.66757 -14.28262 -14.07614 -13.97208 -13.73730 -13.68413 -13.37422 -13.03679 -12.87524 -12.76654 -12.67407 -12.40988 -12.24485 -12.01684 -11.93004 -11.81468 -11.68234 -11.06158 -10.68423 -10.46527 -9.61567 -9.44970 -8.79922 -8.06933 -6.27230 0.27895 0.49670 1.13027 1.49460 1.52492 1.63069 2.06123 2.47743 2.89549 3.14998 3.20620 3.80554 3.90975 4.08421 4.27734 4.33585 4.36607 4.49375 4.56906 4.65465 4.66680 4.79371 4.91074 4.94026 4.97974 5.07245 5.19501 5.21683 5.24313 5.39304 5.54166 5.56458 5.70159 5.72488 5.73923 5.87482 6.16438 6.19975 6.84205 7.42770 8.97912 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.005870 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.746690 B = 4768.921523 C = 5635.142284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.232 4.232 4 H -0.005 1.005 5 C -0.513 4.513 6 H 0.097 0.903 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.958 3.042 10 H -0.243 1.243 11 H -0.282 1.282 12 H -0.294 1.294 13 S 1.247 4.753 14 O -0.916 6.916 15 C -0.387 4.387 16 C -0.070 4.070 17 C -0.150 4.150 18 C -0.121 4.121 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.111 4.111 22 C -0.125 4.125 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.259 0.741 29 H 0.067 0.933 30 H 0.148 0.852 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 7.398 15.685 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.140 4.140 3 C -0.352 4.352 4 H 0.013 0.987 5 C -0.551 4.551 6 H 0.115 0.885 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.783 3.217 10 H -0.166 1.166 11 H -0.208 1.208 12 H -0.221 1.221 13 S 1.453 4.547 14 O -0.912 6.912 15 C -0.523 4.523 16 C -0.072 4.072 17 C -0.170 4.170 18 C -0.139 4.139 19 C -0.149 4.149 20 C -0.086 4.086 21 C -0.168 4.168 22 C -0.144 4.144 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.166 0.834 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.136 6.958 16.258 17.813 hybrid contribution -0.377 1.023 -3.305 3.480 sum 1.759 7.980 12.953 15.315 Atomic orbital electron populations 1.21998 0.97968 1.00827 1.00667 1.21250 0.92517 0.96950 1.03263 1.24891 1.02215 1.00531 1.07598 0.98682 1.21088 0.88818 1.38635 1.06582 0.88504 1.25855 1.02727 0.94518 0.95350 1.70070 1.36971 1.38910 1.09898 0.85497 0.79829 0.77836 0.78569 1.16631 1.20783 1.22123 1.69264 0.88827 0.91895 1.04727 1.92870 1.29891 1.84017 1.84395 1.26494 1.12057 1.14477 0.99270 1.19367 0.96015 0.96841 0.94937 1.21125 0.97618 0.98709 0.99505 1.21308 1.00388 0.99010 0.93185 1.21369 0.95425 0.99958 0.98157 1.20335 0.96112 0.95507 0.96671 1.20859 0.99282 1.03804 0.92812 1.21298 1.00586 1.00688 0.91789 0.92571 0.96197 0.91769 0.90606 0.91309 0.93140 0.91373 0.83445 0.88824 0.84642 0.83296 0.90038 0.90237 0.90207 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.97 9.36 71.98 0.67 -6.29 16 2 C -0.10 -4.71 5.24 30.59 0.16 -4.55 16 3 C -0.23 -11.23 2.27 29.85 0.07 -11.16 16 4 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 5 C -0.51 -24.63 8.06 25.60 0.21 -24.43 16 6 H 0.10 4.02 6.72 -2.91 -0.02 4.00 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -51.43 11.29 21.45 0.24 -51.19 16 9 Si 0.96 39.50 29.54 68.60 2.03 41.53 16 10 H -0.24 -9.00 7.11 99.48 0.71 -8.29 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 13 S 1.25 49.49 12.27 -56.49 -0.69 48.79 16 14 O -0.92 -44.63 15.97 -148.98 -2.38 -47.01 16 15 C -0.39 -13.83 5.55 71.23 0.40 -13.43 16 16 C -0.07 -2.30 5.13 -19.87 -0.10 -2.40 16 17 C -0.15 -5.08 9.70 22.27 0.22 -4.86 16 18 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 19 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 20 C -0.09 -1.90 5.88 -19.87 -0.12 -2.02 16 21 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 22 C -0.12 -3.23 9.36 22.27 0.21 -3.02 16 23 H 0.06 2.48 6.06 -2.39 -0.01 2.46 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.08 4.02 5.94 -2.39 -0.01 4.00 16 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.07 2.71 8.09 -2.39 -0.02 2.69 16 30 H 0.15 4.60 7.09 -2.39 -0.02 4.58 16 31 H 0.09 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 37 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -68.65 317.32 3.54 -65.10 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 1.04 Total: 20.29 kcal Atomic # 6 Polarization: -80.82 SS G_CDS: 3.31 Total: -77.51 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.24 Total: -51.19 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -2.38 Total: -47.01 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.69 Total: 48.79 kcal Total: -68.65 3.54 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.089 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds