Wall clock time and date at job start Mon Mar 30 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47221 * 2 1 4 4 H 1.08993 * 109.47131 * 176.81240 * 3 2 1 5 5 C 1.50702 * 109.46635 * 56.81964 * 3 2 1 6 6 H 1.08006 * 119.99546 * 244.23333 * 5 3 2 7 7 C 1.37872 * 120.00556 * 64.23878 * 5 3 2 8 8 N 1.31516 * 119.99792 * 9.24640 * 7 5 3 9 9 Si 1.86803 * 120.00181 * 189.25220 * 7 5 3 10 10 H 1.48498 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47034 * 119.99770 * 9 7 5 12 12 H 1.48501 * 109.46948 * 239.99456 * 9 7 5 13 13 S 1.81397 * 109.47008 * 296.81988 * 3 2 1 14 14 O 1.42103 * 109.46630 * 187.66640 * 13 3 2 15 15 C 1.81402 * 102.99755 * 304.05130 * 13 3 2 16 16 C 1.50698 * 109.46633 * 185.11630 * 15 13 3 17 17 C 1.38258 * 120.00306 * 90.00493 * 16 15 13 18 18 C 1.38213 * 120.00155 * 179.97438 * 17 16 15 19 19 C 1.38258 * 120.00131 * 0.02562 * 18 17 16 20 20 C 1.38217 * 119.99947 * 359.97438 * 19 18 17 21 21 C 1.38223 * 120.00254 * 269.72321 * 16 15 13 22 22 C 1.50705 * 119.99257 * 0.02562 * 21 16 15 23 23 H 1.08997 * 109.46917 * 304.74906 * 1 2 3 24 24 H 1.08999 * 109.47051 * 64.74622 * 1 2 3 25 25 H 1.08997 * 109.47067 * 184.74511 * 1 2 3 26 26 H 1.09001 * 109.47252 * 239.99823 * 2 1 3 27 27 H 1.09006 * 109.47097 * 120.00243 * 2 1 3 28 28 H 0.97006 * 120.00094 * 359.87246 * 8 7 5 29 29 H 1.08995 * 109.47084 * 305.10973 * 15 13 3 30 30 H 1.08996 * 109.46880 * 65.12051 * 15 13 3 31 31 H 1.07999 * 119.99524 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.99939 * 179.97438 * 18 17 16 33 33 H 1.07999 * 120.00202 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00109 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.47125 * 90.00027 * 22 21 16 36 36 H 1.09005 * 109.46951 * 209.99733 * 22 21 16 37 37 H 1.08992 * 109.47540 * 329.99775 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1285 1.4430 0.0571 5 6 1.4743 2.1752 1.1892 6 1 0.8046 3.0095 1.0409 7 6 1.8117 1.7807 2.4665 8 7 2.7616 0.8900 2.6502 9 14 0.9194 2.5113 3.9360 10 1 -0.0984 3.4841 3.4637 11 1 0.2513 1.4264 4.6989 12 1 1.8963 3.2045 4.8138 13 16 1.5141 2.2698 -1.5263 14 8 2.1328 3.5463 -1.6104 15 6 2.1766 1.1901 -2.8247 16 6 1.9272 1.8149 -4.1732 17 6 2.8660 2.6669 -4.7247 18 6 2.6375 3.2395 -5.9616 19 6 1.4698 2.9608 -6.6474 20 6 0.5311 2.1090 -6.0961 21 6 0.7624 1.5316 -4.8614 22 6 -0.2583 0.5984 -4.2628 23 1 -0.3633 0.5857 0.8444 24 1 -0.3633 0.4384 -0.9294 25 1 -0.3633 -1.0241 0.0850 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.2237 0.5092 1.8870 29 1 3.2487 1.0601 -2.6772 30 1 1.6829 0.2195 -2.7771 31 1 3.7780 2.8850 -4.1888 32 1 3.3707 3.9054 -6.3922 33 1 1.2910 3.4085 -7.6138 34 1 -0.3812 1.8915 -6.6315 35 1 -0.9669 1.1707 -3.6639 36 1 -0.7912 0.0823 -5.0614 37 1 0.2447 -0.1328 -3.6301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084256702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:14 Heat of formation + Delta-G solvation = -35.370153 kcal Electronic energy + Delta-G solvation = -18243.856453 eV Core-core repulsion = 15497.964696 eV Total energy + Delta-G solvation = -2745.891757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.33313 -35.35606 -34.69853 -33.24725 -31.97971 -31.34290 -27.49311 -26.88292 -26.26602 -23.89968 -21.96630 -20.66151 -20.41857 -17.40451 -16.32348 -16.24574 -15.60169 -14.96647 -14.87167 -14.19025 -13.93993 -13.74345 -13.41202 -13.14573 -13.03440 -12.75596 -12.48872 -12.27042 -12.01545 -11.84963 -11.50144 -11.18602 -10.88061 -10.86917 -10.77357 -10.59754 -10.26219 -10.17261 -10.09846 -9.40339 -8.87174 -8.62002 -8.43067 -8.21999 -7.22075 -6.49201 -4.22953 1.38086 1.50341 2.47573 3.38769 3.41661 3.55279 3.63224 3.93616 4.42632 4.59569 4.89858 4.95140 5.08158 5.11489 5.24051 5.33000 5.47705 5.67665 5.69790 5.82732 5.91655 5.95839 5.99414 6.05452 6.17243 6.22020 6.32390 6.55181 6.57602 6.63087 6.79439 6.80766 6.90898 7.13763 7.21428 7.24821 7.83160 8.23955 8.66393 9.49047 10.88262 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034089 B = 0.005405 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.175918 B = 5179.154130 C = 5479.923710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.245 4.245 4 H 0.037 0.963 5 C -0.581 4.581 6 H 0.058 0.942 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.287 1.287 13 S 1.219 4.781 14 O -0.858 6.858 15 C -0.426 4.426 16 C -0.049 4.049 17 C -0.110 4.110 18 C -0.123 4.123 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.085 4.085 22 C -0.124 4.124 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.272 0.728 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -2.624 -14.367 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.366 4.366 4 H 0.055 0.945 5 C -0.620 4.620 6 H 0.076 0.924 7 C -0.173 4.173 8 N -0.535 5.535 9 Si 0.897 3.103 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.214 1.214 13 S 1.421 4.579 14 O -0.853 6.853 15 C -0.558 4.558 16 C -0.050 4.050 17 C -0.129 4.129 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.087 4.087 22 C -0.180 4.180 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.672 -1.805 -12.858 15.081 hybrid contribution 2.698 -0.134 -1.482 3.082 sum -4.974 -1.939 -14.340 15.302 Atomic orbital electron populations 1.21760 0.96032 1.00153 1.02255 1.21327 0.96246 0.96124 1.00325 1.24912 1.02160 1.00697 1.08838 0.94480 1.21212 1.32569 1.17764 0.90444 0.92402 1.25794 0.95592 0.95725 1.00230 1.70736 1.20094 1.27634 1.35082 0.83538 0.75811 0.75961 0.74952 1.21024 1.20910 1.21358 1.70156 1.17851 0.83105 0.86807 1.93001 1.78286 1.29595 1.84441 1.27034 1.08997 1.12567 1.07187 1.19107 0.94343 0.97288 0.94312 1.21066 0.99370 0.96949 0.95491 1.21053 0.97772 1.00137 0.95168 1.21053 0.94497 0.99210 0.99916 1.20959 0.99282 0.98103 0.95453 1.19760 0.95397 0.98723 0.94771 1.20956 0.97536 0.98363 1.01184 0.90481 0.93737 0.94330 0.95011 0.91152 0.91631 0.89594 0.85790 0.86543 0.86389 0.86364 0.86065 0.90210 0.91612 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.44 37.16 0.35 -2.11 16 2 C -0.10 -2.02 5.24 -26.73 -0.14 -2.16 16 3 C -0.24 -5.76 2.20 -27.88 -0.06 -5.82 16 4 H 0.04 0.99 7.51 -51.93 -0.39 0.60 16 5 C -0.58 -15.43 7.02 -34.44 -0.24 -15.67 16 6 H 0.06 1.55 7.73 -52.48 -0.41 1.14 16 7 C 0.03 0.91 5.22 -17.82 -0.09 0.82 16 8 N -0.90 -25.97 13.01 55.43 0.72 -25.25 16 9 Si 1.07 24.30 29.91 -169.99 -5.09 19.22 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 S 1.22 24.68 11.36 -107.50 -1.22 23.46 16 14 O -0.86 -22.45 18.12 -35.23 -0.64 -23.09 16 15 C -0.43 -7.09 4.93 36.00 0.18 -6.91 16 16 C -0.05 -0.80 5.12 -104.62 -0.54 -1.33 16 17 C -0.11 -1.81 9.70 -39.58 -0.38 -2.19 16 18 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 19 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 20 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 21 C -0.09 -1.16 5.88 -104.62 -0.62 -1.77 16 22 C -0.12 -1.30 9.60 36.01 0.35 -0.96 16 23 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 24 H 0.04 0.61 7.23 -51.93 -0.38 0.23 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.03 0.54 6.49 -51.93 -0.34 0.20 16 27 H 0.07 1.60 6.36 -51.93 -0.33 1.27 16 28 H 0.27 7.82 6.01 -40.82 -0.25 7.58 16 29 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 30 H 0.12 1.72 4.91 -51.93 -0.26 1.46 16 31 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -33.94 311.70 -9.08 -43.02 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.18 Total: 1.99 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: -2.38 Total: -44.05 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.72 Total: -25.25 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.64 Total: -23.09 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.09 Total: 19.22 kcal Atomic # 16 Polarization: 24.68 SS G_CDS: -1.22 Total: 23.46 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.94 -9.08 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.651 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds