Wall clock time and date at job start Mon Mar 30 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 H 1.08998 * 109.47266 * 181.65072 * 3 2 1 5 5 C 1.50707 * 109.46913 * 301.65057 * 3 2 1 6 6 H 1.07997 * 119.99776 * 119.99522 * 5 3 2 7 7 C 1.37881 * 119.99796 * 300.00363 * 5 3 2 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47170 * 59.99750 * 9 7 5 11 11 H 1.48500 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47247 * 299.99614 * 9 7 5 13 13 S 1.81400 * 109.47229 * 61.64666 * 3 2 1 14 14 O 1.42102 * 109.46687 * 172.68935 * 13 3 2 15 15 C 1.81400 * 102.99634 * 56.30582 * 13 3 2 16 16 C 1.50703 * 109.47078 * 174.77049 * 15 13 3 17 17 C 1.38262 * 120.00137 * 269.73076 * 16 15 13 18 18 C 1.38214 * 119.99902 * 179.74612 * 17 16 15 19 19 C 1.38253 * 120.00137 * 0.54286 * 18 17 16 20 20 C 1.38220 * 119.99835 * 359.70666 * 19 18 17 21 21 C 1.38215 * 119.99871 * 89.99572 * 16 15 13 22 22 C 1.50693 * 119.99925 * 0.02562 * 21 16 15 23 23 H 1.09003 * 109.47067 * 295.30490 * 1 2 3 24 24 H 1.08990 * 109.47334 * 55.30499 * 1 2 3 25 25 H 1.09006 * 109.47202 * 175.31104 * 1 2 3 26 26 H 1.09005 * 109.47392 * 119.99744 * 2 1 3 27 27 H 1.08997 * 109.47374 * 239.99838 * 2 1 3 28 28 H 0.96998 * 119.99747 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47165 * 294.76950 * 15 13 3 30 30 H 1.09000 * 109.47398 * 54.77553 * 15 13 3 31 31 H 1.08002 * 120.00038 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.99813 * 180.26968 * 18 17 16 33 33 H 1.07994 * 120.00170 * 179.72420 * 19 18 17 34 34 H 1.08001 * 120.00340 * 179.97438 * 20 19 18 35 35 H 1.09003 * 109.47420 * 90.00165 * 22 21 16 36 36 H 1.09007 * 109.47184 * 209.99222 * 22 21 16 37 37 H 1.09000 * 109.47408 * 329.99700 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0296 5 6 1.5045 2.1646 -1.2096 6 1 0.8866 3.0416 -1.0852 7 6 1.8033 1.7055 -2.4749 8 7 2.5561 0.6378 -2.6262 9 14 1.1390 2.6002 -3.9741 10 1 1.6334 4.0005 -3.9743 11 1 1.6013 1.9122 -5.2062 12 1 -0.3454 2.5994 -3.9335 13 16 1.4758 2.2834 1.5051 14 8 2.0860 3.5640 1.5891 15 6 2.1146 1.2212 2.8296 16 6 1.8344 1.8604 4.1653 17 6 2.7607 2.7181 4.7292 18 6 2.5014 3.3084 5.9517 19 6 1.3207 3.0325 6.6160 20 6 0.3969 2.1711 6.0547 21 6 0.6538 1.5850 4.8291 22 6 -0.3529 0.6451 4.2176 23 1 -0.3633 0.4393 0.9291 24 1 -0.3633 0.5849 -0.8448 25 1 -0.3634 -1.0243 -0.0840 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.7666 0.3151 -3.5164 29 1 1.6256 0.2482 2.7828 30 1 3.1901 1.0937 2.7064 31 1 3.6853 2.9296 4.2126 32 1 3.2231 3.9817 6.3901 33 1 1.1201 3.4903 7.5733 34 1 -0.5252 1.9552 6.5738 35 1 -0.1443 -0.3736 4.5443 36 1 -1.3559 0.9302 4.5352 37 1 -0.2869 0.6989 3.1309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084256706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:17 Heat of formation + Delta-G solvation = -32.517111 kcal Electronic energy + Delta-G solvation = -18216.751939 eV Core-core repulsion = 15470.983899 eV Total energy + Delta-G solvation = -2745.768040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27066 -35.01562 -34.52500 -33.17157 -31.91789 -31.38977 -27.43159 -27.18348 -26.17978 -23.85964 -21.90041 -20.58700 -20.31783 -16.90191 -16.17079 -16.04431 -15.52853 -15.19096 -14.75418 -14.34969 -13.87250 -13.67795 -13.27285 -13.02087 -12.91703 -12.68053 -12.28037 -12.07211 -12.01743 -11.84280 -11.33892 -11.07573 -10.93629 -10.83464 -10.71951 -10.66547 -10.41665 -10.07112 -9.86578 -9.23345 -9.20605 -8.59207 -8.55247 -8.12632 -7.08903 -6.13482 -4.24552 1.44244 1.55961 2.57832 3.25831 3.30227 3.34770 3.74536 3.98989 4.32547 4.69721 4.95346 5.01488 5.14432 5.17533 5.18776 5.44712 5.54030 5.73443 5.77424 5.90626 5.97610 6.00173 6.21654 6.23396 6.35351 6.36016 6.42123 6.63123 6.67867 6.75654 6.85859 7.03656 7.17235 7.19596 7.41637 7.61838 7.78713 8.10052 8.74872 9.39309 10.91371 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.005396 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.795412 B = 5187.685368 C = 5512.123373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.221 4.221 4 H 0.044 0.956 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.074 3.926 8 N -0.881 5.881 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.271 1.271 13 S 1.198 4.802 14 O -0.861 6.861 15 C -0.421 4.421 16 C -0.048 4.048 17 C -0.110 4.110 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.123 4.123 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.099 0.901 28 H 0.264 0.736 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -2.534 13.492 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.343 4.343 4 H 0.062 0.938 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.130 4.130 8 N -0.518 5.518 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.196 1.196 13 S 1.401 4.599 14 O -0.857 6.857 15 C -0.553 4.553 16 C -0.049 4.049 17 C -0.129 4.129 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.138 4.138 21 C -0.087 4.087 22 C -0.180 4.180 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.813 -1.800 13.470 15.202 hybrid contribution 2.253 0.278 -0.991 2.477 sum -4.560 -1.522 12.479 13.373 Atomic orbital electron populations 1.21788 0.97045 0.99860 1.01541 1.21274 0.94949 0.96134 1.01476 1.24757 1.02750 1.00682 1.06121 0.93782 1.20318 1.32958 1.11852 0.89050 0.92001 1.24879 0.94557 0.94807 0.98758 1.69854 1.36250 1.22749 1.22979 0.86592 0.79620 0.79998 0.81586 1.20079 1.21083 1.19620 1.70089 1.18777 0.83489 0.87535 1.92999 1.78775 1.29353 1.84552 1.26937 1.08748 1.12169 1.07453 1.19151 0.94162 0.97067 0.94490 1.21072 0.99469 0.96892 0.95479 1.21047 0.97560 1.00102 0.95442 1.21039 0.94557 0.99256 0.99952 1.20961 0.99457 0.98023 0.95388 1.19767 0.95296 0.98715 0.94893 1.20936 0.97102 0.97963 1.01958 0.94321 0.90890 0.94580 0.95818 0.88315 0.92647 0.85904 0.89470 0.86514 0.86449 0.86440 0.86127 0.91082 0.91295 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.43 37.16 0.35 -2.19 16 2 C -0.10 -2.05 5.30 -26.73 -0.14 -2.19 16 3 C -0.22 -5.26 2.57 -27.88 -0.07 -5.33 16 4 H 0.04 1.19 8.14 -51.92 -0.42 0.77 16 5 C -0.50 -13.24 7.16 -34.44 -0.25 -13.48 16 6 H 0.06 1.63 7.71 -52.49 -0.40 1.22 16 7 C 0.07 1.97 5.30 -17.82 -0.09 1.88 16 8 N -0.88 -24.05 11.34 55.43 0.63 -23.42 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 S 1.20 24.41 10.92 -107.50 -1.17 23.24 16 14 O -0.86 -22.48 18.12 -35.23 -0.64 -23.12 16 15 C -0.42 -7.13 4.61 36.01 0.17 -6.96 16 16 C -0.05 -0.78 5.12 -104.62 -0.54 -1.32 16 17 C -0.11 -1.83 9.70 -39.58 -0.38 -2.22 16 18 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 19 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 20 C -0.12 -1.49 9.70 -39.58 -0.38 -1.88 16 21 C -0.09 -1.18 5.88 -104.63 -0.62 -1.80 16 22 C -0.12 -1.34 9.19 36.00 0.33 -1.01 16 23 H 0.04 0.54 6.48 -51.93 -0.34 0.21 16 24 H 0.07 1.42 7.00 -51.93 -0.36 1.06 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 27 H 0.10 2.36 6.12 -51.93 -0.32 2.04 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.12 1.76 5.73 -51.93 -0.30 1.46 16 30 H 0.09 1.55 8.08 -51.92 -0.42 1.13 16 31 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.08 0.86 5.69 -51.93 -0.30 0.56 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -32.58 311.73 -9.22 -41.80 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.29 Total: 1.84 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: -2.42 Total: -40.66 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.63 Total: -23.42 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.64 Total: -23.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 24.41 SS G_CDS: -1.17 Total: 23.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.58 -9.22 -41.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.278 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds