Wall clock time and date at job start Mon Mar 30 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 H 1.08998 * 109.47266 * 181.65072 * 3 2 1 5 5 C 1.50707 * 109.46913 * 301.65057 * 3 2 1 6 6 H 1.07997 * 119.99776 * 119.99522 * 5 3 2 7 7 C 1.37881 * 119.99796 * 300.00363 * 5 3 2 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47170 * 59.99750 * 9 7 5 11 11 H 1.48500 * 109.46893 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47247 * 299.99614 * 9 7 5 13 13 S 1.81400 * 109.47229 * 61.64666 * 3 2 1 14 14 O 1.42102 * 109.46687 * 172.68935 * 13 3 2 15 15 C 1.81400 * 102.99634 * 56.30582 * 13 3 2 16 16 C 1.50703 * 109.47078 * 174.77049 * 15 13 3 17 17 C 1.38262 * 120.00137 * 269.73076 * 16 15 13 18 18 C 1.38214 * 119.99902 * 179.74612 * 17 16 15 19 19 C 1.38253 * 120.00137 * 0.54286 * 18 17 16 20 20 C 1.38220 * 119.99835 * 359.70666 * 19 18 17 21 21 C 1.38215 * 119.99871 * 89.99572 * 16 15 13 22 22 C 1.50693 * 119.99925 * 0.02562 * 21 16 15 23 23 H 1.09003 * 109.47067 * 295.30490 * 1 2 3 24 24 H 1.08990 * 109.47334 * 55.30499 * 1 2 3 25 25 H 1.09006 * 109.47202 * 175.31104 * 1 2 3 26 26 H 1.09005 * 109.47392 * 119.99744 * 2 1 3 27 27 H 1.08997 * 109.47374 * 239.99838 * 2 1 3 28 28 H 0.96998 * 119.99747 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47165 * 294.76950 * 15 13 3 30 30 H 1.09000 * 109.47398 * 54.77553 * 15 13 3 31 31 H 1.08002 * 120.00038 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.99813 * 180.26968 * 18 17 16 33 33 H 1.07994 * 120.00170 * 179.72420 * 19 18 17 34 34 H 1.08001 * 120.00340 * 179.97438 * 20 19 18 35 35 H 1.09003 * 109.47420 * 90.00165 * 22 21 16 36 36 H 1.09007 * 109.47184 * 209.99222 * 22 21 16 37 37 H 1.09000 * 109.47408 * 329.99700 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0296 5 6 1.5045 2.1646 -1.2096 6 1 0.8866 3.0416 -1.0852 7 6 1.8033 1.7055 -2.4749 8 7 2.5561 0.6378 -2.6262 9 14 1.1390 2.6002 -3.9741 10 1 1.6334 4.0005 -3.9743 11 1 1.6013 1.9122 -5.2062 12 1 -0.3454 2.5994 -3.9335 13 16 1.4758 2.2834 1.5051 14 8 2.0860 3.5640 1.5891 15 6 2.1146 1.2212 2.8296 16 6 1.8344 1.8604 4.1653 17 6 2.7607 2.7181 4.7292 18 6 2.5014 3.3084 5.9517 19 6 1.3207 3.0325 6.6160 20 6 0.3969 2.1711 6.0547 21 6 0.6538 1.5850 4.8291 22 6 -0.3529 0.6451 4.2176 23 1 -0.3633 0.4393 0.9291 24 1 -0.3633 0.5849 -0.8448 25 1 -0.3634 -1.0243 -0.0840 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.7666 0.3151 -3.5164 29 1 1.6256 0.2482 2.7828 30 1 3.1901 1.0937 2.7064 31 1 3.6853 2.9296 4.2126 32 1 3.2231 3.9817 6.3901 33 1 1.1201 3.4903 7.5733 34 1 -0.5252 1.9552 6.5738 35 1 -0.1443 -0.3736 4.5443 36 1 -1.3559 0.9302 4.5352 37 1 -0.2869 0.6989 3.1309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084256706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:16 Heat of formation + Delta-G solvation = -52.738314 kcal Electronic energy + Delta-G solvation = -18217.628796 eV Core-core repulsion = 15470.983899 eV Total energy + Delta-G solvation = -2746.644897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33847 -36.84827 -36.42925 -34.28152 -33.30774 -32.94576 -28.98185 -28.55739 -27.24542 -25.67881 -23.00389 -22.04053 -21.65521 -18.66504 -17.94019 -17.35732 -16.96251 -16.65404 -15.97725 -15.94412 -15.51295 -15.28012 -14.60062 -14.35028 -14.11322 -14.00162 -13.80049 -13.55055 -13.19336 -12.90945 -12.81307 -12.78967 -12.65500 -12.45122 -12.21718 -11.94261 -11.81442 -11.71367 -11.46836 -11.03757 -10.84241 -10.56568 -9.68076 -9.43648 -8.82431 -8.14722 -6.33037 0.24079 0.49072 1.05588 1.40539 1.42860 1.50016 2.06655 2.39501 2.88778 3.03090 3.16480 3.74679 3.90978 4.11344 4.21476 4.25719 4.54023 4.60913 4.64358 4.70632 4.75009 4.80213 4.94086 5.03348 5.06211 5.19607 5.25874 5.31256 5.49761 5.50741 5.59343 5.61430 5.63248 5.76892 5.85697 6.00393 6.16713 6.23502 6.73037 7.33516 8.88290 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.005396 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.795412 B = 5187.685368 C = 5512.123373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.234 4.234 4 H -0.007 1.007 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 0.949 3.051 10 H -0.284 1.284 11 H -0.280 1.280 12 H -0.251 1.251 13 S 1.248 4.752 14 O -0.927 6.927 15 C -0.403 4.403 16 C -0.081 4.081 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.085 4.085 22 C -0.130 4.130 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.264 0.736 29 H 0.157 0.843 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 -3.406 15.764 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.355 4.355 4 H 0.011 0.989 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.173 4.173 8 N -0.544 5.544 9 Si 0.773 3.227 10 H -0.210 1.210 11 H -0.205 1.205 12 H -0.175 1.175 13 S 1.454 4.546 14 O -0.923 6.923 15 C -0.538 4.538 16 C -0.083 4.083 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.086 4.086 22 C -0.187 4.187 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.175 0.825 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.685 -2.660 15.699 18.637 hybrid contribution 3.188 0.523 -1.476 3.552 sum -6.497 -2.137 14.222 15.782 Atomic orbital electron populations 1.21767 0.94188 1.01555 1.02525 1.21194 0.97479 0.93607 1.01155 1.24900 0.99499 1.03216 1.07888 0.98862 1.20620 1.32953 1.11829 0.90499 0.92621 1.25612 0.94855 0.95477 1.01331 1.69993 1.37169 1.23861 1.23371 0.85751 0.80168 0.78170 0.78587 1.21042 1.20523 1.17524 1.69032 1.17724 0.81691 0.86131 1.92886 1.80266 1.33539 1.85585 1.26717 1.08025 1.12616 1.06487 1.19205 0.95953 0.98611 0.94489 1.21158 0.99312 0.98642 0.97102 1.21308 0.99064 1.00336 0.94735 1.21509 0.93346 0.98359 1.00836 1.21465 1.00638 0.96822 0.94781 1.20171 0.94511 0.98649 0.95262 1.21108 0.97609 0.98272 1.01662 0.90681 0.93228 0.91899 0.92999 0.91818 0.92725 0.82506 0.91071 0.89051 0.84932 0.82998 0.82297 0.89178 0.88563 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.43 71.98 0.68 -4.06 16 2 C -0.09 -3.93 5.30 30.59 0.16 -3.77 16 3 C -0.23 -11.57 2.57 29.85 0.08 -11.50 16 4 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 5 C -0.52 -28.33 7.16 25.60 0.18 -28.14 16 6 H 0.06 3.02 7.71 -2.91 -0.02 3.00 16 7 C 0.03 1.57 5.30 84.66 0.45 2.02 16 8 N -0.91 -51.14 11.34 21.45 0.24 -50.90 16 9 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 13 S 1.25 51.66 10.92 -56.49 -0.62 51.04 16 14 O -0.93 -50.50 18.12 -148.98 -2.70 -53.20 16 15 C -0.40 -13.48 4.61 71.24 0.33 -13.15 16 16 C -0.08 -2.58 5.12 -19.86 -0.10 -2.69 16 17 C -0.14 -4.83 9.70 22.27 0.22 -4.62 16 18 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 19 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 20 C -0.12 -2.44 9.70 22.27 0.22 -2.22 16 21 C -0.08 -2.05 5.88 -19.87 -0.12 -2.17 16 22 C -0.13 -2.22 9.19 71.23 0.65 -1.56 16 23 H 0.07 1.88 6.48 -2.39 -0.02 1.87 16 24 H 0.05 1.88 7.00 -2.39 -0.02 1.86 16 25 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.05 1.80 6.59 -2.38 -0.02 1.78 16 27 H 0.06 3.12 6.12 -2.39 -0.01 3.10 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.16 4.08 5.73 -2.39 -0.01 4.07 16 30 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 31 H 0.09 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.15 8.09 -2.38 -0.02 1.13 16 37 H 0.07 1.32 5.69 -2.39 -0.01 1.30 16 Total: -1.00 -75.78 311.73 3.19 -72.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.05 Total: 13.27 kcal Atomic # 6 Polarization: -80.91 SS G_CDS: 3.19 Total: -77.72 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.24 Total: -50.90 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.70 Total: -53.20 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.62 Total: 51.04 kcal Total: -75.78 3.19 -72.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084256706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.843 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds