Wall clock time and date at job start Mon Mar 30 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46684 * 2 1 4 4 H 1.09000 * 109.46806 * 185.94433 * 3 2 1 5 5 C 1.50689 * 109.47235 * 305.95415 * 3 2 1 6 6 H 1.07999 * 120.00440 * 120.00349 * 5 3 2 7 7 C 1.37884 * 119.99991 * 299.99490 * 5 3 2 8 8 N 1.31515 * 119.99906 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47299 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46997 * 120.00648 * 9 7 5 12 12 H 1.48500 * 109.47002 * 240.00134 * 9 7 5 13 13 S 1.81403 * 109.46978 * 65.95211 * 3 2 1 14 14 O 1.42097 * 109.46810 * 305.43211 * 13 3 2 15 15 C 1.76201 * 103.00074 * 54.48445 * 13 3 2 16 16 C 1.38256 * 120.00344 * 264.31438 * 15 13 3 17 17 C 1.38216 * 120.00289 * 179.76245 * 16 15 13 18 18 C 1.38263 * 119.99485 * 0.51219 * 17 16 15 19 19 C 1.50698 * 119.99772 * 179.71934 * 18 17 16 20 20 C 1.38210 * 120.00298 * 359.74591 * 18 17 16 21 21 C 1.50691 * 120.00222 * 179.97438 * 20 18 17 22 22 C 1.38219 * 119.99926 * 84.58947 * 15 13 3 23 23 H 1.09004 * 109.47017 * 172.27512 * 1 2 3 24 24 H 1.09002 * 109.47264 * 292.26709 * 1 2 3 25 25 H 1.08997 * 109.47345 * 52.27374 * 1 2 3 26 26 H 1.08997 * 109.46764 * 240.00724 * 2 1 3 27 27 H 1.08995 * 109.47560 * 119.99870 * 2 1 3 28 28 H 0.96999 * 120.00233 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.99850 * 359.97438 * 16 15 13 30 30 H 1.07995 * 120.00185 * 180.23308 * 17 16 15 31 31 H 1.09004 * 109.47272 * 270.02604 * 19 18 17 32 32 H 1.09003 * 109.46796 * 30.02125 * 19 18 17 33 33 H 1.09000 * 109.47030 * 150.02118 * 19 18 17 34 34 H 1.09001 * 109.47106 * 270.02154 * 21 20 18 35 35 H 1.09001 * 109.47092 * 30.01595 * 21 20 18 36 36 H 1.09000 * 109.47539 * 150.01642 * 21 20 18 37 37 H 1.07995 * 119.99674 * 0.02562 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1247 1.4445 -0.1064 5 6 1.4209 2.1942 -1.1500 6 1 0.8141 3.0673 -0.9605 7 6 1.6292 1.7674 -2.4445 8 7 2.3678 0.7040 -2.6754 9 14 0.8624 2.6995 -3.8702 10 1 0.0826 3.8499 -3.3472 11 1 1.9339 3.1954 -4.7708 12 1 -0.0394 1.7935 -4.6260 13 16 1.5843 2.2449 1.5619 14 8 0.1820 2.1314 1.7612 15 6 2.2469 1.1535 2.7762 16 6 1.4412 0.1886 3.3517 17 6 1.9622 -0.6707 4.3007 18 6 3.2864 -0.5584 4.6821 19 6 3.8528 -1.4911 5.7213 20 6 4.0905 0.4097 4.1106 21 6 5.5336 0.5324 4.5268 22 6 3.5707 1.2658 3.1575 23 1 -0.3633 -1.0184 -0.1381 24 1 -0.3634 0.3894 0.9510 25 1 -0.3634 0.6288 -0.8128 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.5141 0.4035 -3.5860 29 1 0.4055 0.1041 3.0573 30 1 1.3338 -1.4268 4.7475 31 1 3.7199 -1.0555 6.7117 32 1 3.3330 -2.4480 5.6726 33 1 4.9151 -1.6446 5.5314 34 1 5.6120 1.2223 5.3671 35 1 5.9106 -0.4462 4.8238 36 1 6.1220 0.9100 3.6906 37 1 4.1987 2.0226 2.7115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084258790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:32 Heat of formation + Delta-G solvation = -29.422564 kcal Electronic energy + Delta-G solvation = -18376.187228 eV Core-core repulsion = 15630.553377 eV Total energy + Delta-G solvation = -2745.633850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17710 -35.10511 -34.34305 -33.12304 -31.91513 -31.22093 -27.48614 -27.00242 -26.20392 -23.77353 -21.92039 -20.70185 -20.10669 -17.26433 -16.14128 -15.77886 -15.49162 -15.09903 -14.56344 -14.23788 -13.88243 -13.45320 -13.27867 -12.89349 -12.75587 -12.54074 -12.19798 -11.89847 -11.82411 -11.70047 -11.42627 -11.11156 -10.97941 -10.87499 -10.69600 -10.48450 -10.31499 -9.98773 -9.62131 -9.08761 -8.89913 -8.54592 -8.44451 -8.31173 -7.09912 -6.06376 -4.18107 1.39228 1.70439 2.86539 3.25382 3.34214 3.39298 3.75031 4.15227 4.36638 4.86035 4.93903 5.03562 5.17614 5.22331 5.28697 5.49767 5.54572 5.69315 5.71737 5.84963 5.94228 5.97174 6.30959 6.38245 6.45435 6.55516 6.64745 6.68142 6.78818 6.82943 7.18797 7.21369 7.31443 7.36574 7.68094 7.71851 7.88798 8.18173 8.81518 9.45040 10.96869 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031067 B = 0.005645 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.067609 B = 4958.519318 C = 5112.155414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.223 4.223 4 H 0.075 0.925 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.075 3.925 8 N -0.879 5.879 9 Si 0.892 3.108 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.284 1.284 13 S 1.266 4.734 14 O -0.863 6.863 15 C -0.434 4.434 16 C -0.053 4.053 17 C -0.138 4.138 18 C -0.072 4.072 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.048 4.048 23 H 0.016 0.984 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.017 0.983 28 H 0.261 0.739 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 0.036 12.950 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.344 4.344 4 H 0.092 0.908 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.130 4.130 8 N -0.516 5.516 9 Si 0.719 3.281 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.210 1.210 13 S 1.468 4.532 14 O -0.858 6.858 15 C -0.528 4.528 16 C -0.072 4.072 17 C -0.157 4.157 18 C -0.072 4.072 19 C -0.173 4.173 20 C -0.111 4.111 21 C -0.170 4.170 22 C -0.067 4.067 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.192 0.769 13.014 14.433 hybrid contribution -1.184 -1.970 -1.092 2.544 sum 5.008 -1.201 11.923 12.987 Atomic orbital electron populations 1.21966 0.97209 0.98540 1.03376 1.21409 0.95135 0.97427 1.00548 1.24823 1.02965 1.00331 1.06274 0.90760 1.20409 1.32008 1.12065 0.89620 0.92006 1.24875 0.94707 0.94809 0.98565 1.69907 1.37904 1.23405 1.20433 0.86529 0.79203 0.80090 0.82277 1.19400 1.20742 1.20989 1.68741 0.92233 1.05794 0.86459 1.92961 1.27438 1.82227 1.83200 1.28208 1.00735 1.10419 1.13447 1.21086 0.99745 0.92484 0.93901 1.21040 0.94959 1.00377 0.99321 1.19772 0.93838 0.96295 0.97263 1.20865 1.01252 0.98016 0.97177 1.19776 0.95996 0.96919 0.98407 1.20812 0.92353 1.02159 1.01641 1.20702 0.93561 0.97430 0.95036 0.96444 0.91875 0.91565 0.89495 0.96438 0.92903 0.85695 0.86689 0.91350 0.91879 0.91200 0.91508 0.91618 0.91430 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.18 37.16 0.34 -3.47 16 2 C -0.11 -2.62 5.28 -26.73 -0.14 -2.76 16 3 C -0.22 -5.25 2.58 -27.88 -0.07 -5.32 16 4 H 0.07 1.75 8.14 -51.92 -0.42 1.33 16 5 C -0.50 -13.09 6.93 -34.44 -0.24 -13.33 16 6 H 0.06 1.61 7.71 -52.49 -0.40 1.20 16 7 C 0.07 1.99 5.26 -17.82 -0.09 1.90 16 8 N -0.88 -24.36 11.39 55.43 0.63 -23.73 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 S 1.27 24.65 13.03 -107.50 -1.40 23.25 16 14 O -0.86 -20.67 13.74 -35.23 -0.48 -21.15 16 15 C -0.43 -7.79 4.62 -39.58 -0.18 -7.98 16 16 C -0.05 -0.99 8.55 -39.58 -0.34 -1.33 16 17 C -0.14 -2.19 9.70 -39.58 -0.38 -2.58 16 18 C -0.07 -1.01 5.88 -104.62 -0.62 -1.63 16 19 C -0.12 -1.22 9.60 36.00 0.35 -0.87 16 20 C -0.11 -1.53 5.88 -104.63 -0.62 -2.15 16 21 C -0.11 -1.16 9.60 36.00 0.35 -0.81 16 22 C -0.05 -0.73 9.41 -39.58 -0.37 -1.10 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 1.57 4.97 -51.93 -0.26 1.32 16 25 H 0.07 1.77 6.72 -51.93 -0.35 1.42 16 26 H 0.09 2.37 6.25 -51.93 -0.32 2.04 16 27 H 0.02 0.40 6.24 -51.93 -0.32 0.08 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.13 2.54 6.80 -52.48 -0.36 2.18 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.07 0.64 5.95 -51.93 -0.31 0.33 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 36 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -32.14 305.26 -8.84 -40.98 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.15 Total: 1.69 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: -2.02 Total: -41.43 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.63 Total: -23.73 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.48 Total: -21.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -1.40 Total: 23.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.14 -8.84 -40.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.562 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds