Wall clock time and date at job start Mon Mar 30 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46684 * 2 1 4 4 H 1.09000 * 109.46806 * 185.94433 * 3 2 1 5 5 C 1.50689 * 109.47235 * 305.95415 * 3 2 1 6 6 H 1.07999 * 120.00440 * 120.00349 * 5 3 2 7 7 C 1.37884 * 119.99991 * 299.99490 * 5 3 2 8 8 N 1.31515 * 119.99906 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47299 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46997 * 120.00648 * 9 7 5 12 12 H 1.48500 * 109.47002 * 240.00134 * 9 7 5 13 13 S 1.81403 * 109.46978 * 65.95211 * 3 2 1 14 14 O 1.42097 * 109.46810 * 305.43211 * 13 3 2 15 15 C 1.76201 * 103.00074 * 54.48445 * 13 3 2 16 16 C 1.38256 * 120.00344 * 264.31438 * 15 13 3 17 17 C 1.38216 * 120.00289 * 179.76245 * 16 15 13 18 18 C 1.38263 * 119.99485 * 0.51219 * 17 16 15 19 19 C 1.50698 * 119.99772 * 179.71934 * 18 17 16 20 20 C 1.38210 * 120.00298 * 359.74591 * 18 17 16 21 21 C 1.50691 * 120.00222 * 179.97438 * 20 18 17 22 22 C 1.38219 * 119.99926 * 84.58947 * 15 13 3 23 23 H 1.09004 * 109.47017 * 172.27512 * 1 2 3 24 24 H 1.09002 * 109.47264 * 292.26709 * 1 2 3 25 25 H 1.08997 * 109.47345 * 52.27374 * 1 2 3 26 26 H 1.08997 * 109.46764 * 240.00724 * 2 1 3 27 27 H 1.08995 * 109.47560 * 119.99870 * 2 1 3 28 28 H 0.96999 * 120.00233 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.99850 * 359.97438 * 16 15 13 30 30 H 1.07995 * 120.00185 * 180.23308 * 17 16 15 31 31 H 1.09004 * 109.47272 * 270.02604 * 19 18 17 32 32 H 1.09003 * 109.46796 * 30.02125 * 19 18 17 33 33 H 1.09000 * 109.47030 * 150.02118 * 19 18 17 34 34 H 1.09001 * 109.47106 * 270.02154 * 21 20 18 35 35 H 1.09001 * 109.47092 * 30.01595 * 21 20 18 36 36 H 1.09000 * 109.47539 * 150.01642 * 21 20 18 37 37 H 1.07995 * 119.99674 * 0.02562 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1247 1.4445 -0.1064 5 6 1.4209 2.1942 -1.1500 6 1 0.8141 3.0673 -0.9605 7 6 1.6292 1.7674 -2.4445 8 7 2.3678 0.7040 -2.6754 9 14 0.8624 2.6995 -3.8702 10 1 0.0826 3.8499 -3.3472 11 1 1.9339 3.1954 -4.7708 12 1 -0.0394 1.7935 -4.6260 13 16 1.5843 2.2449 1.5619 14 8 0.1820 2.1314 1.7612 15 6 2.2469 1.1535 2.7762 16 6 1.4412 0.1886 3.3517 17 6 1.9622 -0.6707 4.3007 18 6 3.2864 -0.5584 4.6821 19 6 3.8528 -1.4911 5.7213 20 6 4.0905 0.4097 4.1106 21 6 5.5336 0.5324 4.5268 22 6 3.5707 1.2658 3.1575 23 1 -0.3633 -1.0184 -0.1381 24 1 -0.3634 0.3894 0.9510 25 1 -0.3634 0.6288 -0.8128 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.5141 0.4035 -3.5860 29 1 0.4055 0.1041 3.0573 30 1 1.3338 -1.4268 4.7475 31 1 3.7199 -1.0555 6.7117 32 1 3.3330 -2.4480 5.6726 33 1 4.9151 -1.6446 5.5314 34 1 5.6120 1.2223 5.3671 35 1 5.9106 -0.4462 4.8238 36 1 6.1220 0.9100 3.6906 37 1 4.1987 2.0226 2.7115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084258790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:32 Heat of formation + Delta-G solvation = -48.142050 kcal Electronic energy + Delta-G solvation = -18376.998966 eV Core-core repulsion = 15630.553377 eV Total energy + Delta-G solvation = -2746.445588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34359 -36.98630 -36.21735 -34.29114 -33.23306 -32.98940 -29.00808 -28.48482 -27.26347 -25.76232 -23.06987 -22.09977 -21.90710 -18.80982 -18.04537 -17.26934 -16.94937 -16.65512 -15.86632 -15.79303 -15.27274 -15.03573 -14.69392 -14.17460 -14.01585 -13.69521 -13.56289 -13.48015 -13.41308 -12.91180 -12.80497 -12.76181 -12.65446 -12.51104 -12.31935 -12.09683 -11.90579 -11.84246 -11.53746 -11.06979 -10.66839 -10.40068 -9.79848 -9.51720 -8.83328 -8.08034 -6.25712 0.10497 0.48617 1.33356 1.39160 1.43825 1.54324 2.24468 2.42470 2.80614 3.14033 3.31022 3.91828 3.97399 4.10420 4.36800 4.45894 4.48760 4.52925 4.62198 4.68315 4.76919 4.83142 4.94142 5.03511 5.06773 5.14315 5.22835 5.26667 5.35664 5.39804 5.48181 5.50645 5.59838 5.67170 5.71343 5.84115 6.14495 6.17816 6.80908 7.39702 8.93608 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031067 B = 0.005645 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.067609 B = 4958.519318 C = 5112.155414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.243 4.243 4 H 0.071 0.929 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.030 3.970 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.290 1.290 13 S 1.335 4.665 14 O -0.910 6.910 15 C -0.457 4.457 16 C -0.081 4.081 17 C -0.149 4.149 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.051 4.051 23 H 0.027 0.973 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 0.128 14.774 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.362 4.362 4 H 0.089 0.911 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.770 3.230 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.216 1.216 13 S 1.538 4.462 14 O -0.906 6.906 15 C -0.554 4.554 16 C -0.101 4.101 17 C -0.168 4.168 18 C -0.069 4.069 19 C -0.172 4.172 20 C -0.112 4.112 21 C -0.169 4.169 22 C -0.070 4.070 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.185 0.881 14.806 16.941 hybrid contribution -1.736 -2.080 -1.459 3.077 sum 6.450 -1.199 13.347 14.872 Atomic orbital electron populations 1.21856 0.97589 0.98608 1.02122 1.21281 0.94656 0.98278 0.99476 1.24964 1.02609 0.99684 1.08945 0.91061 1.20680 1.31538 1.11978 0.90754 0.92515 1.25555 0.95220 0.95562 1.00827 1.70015 1.39167 1.24618 1.20739 0.85710 0.78607 0.78961 0.79745 1.18941 1.19517 1.21631 1.68083 0.89856 1.04424 0.83866 1.92851 1.30686 1.83393 1.83651 1.27819 1.02344 1.11285 1.13930 1.21000 0.98726 0.94364 0.95969 1.21266 0.96360 1.00237 0.98929 1.20286 0.92975 0.96424 0.97183 1.20960 1.02175 0.97400 0.96634 1.20292 0.98020 0.95746 0.97154 1.20914 0.89478 1.03725 1.02740 1.21137 0.92500 0.98237 0.95112 0.95347 0.92141 0.93978 0.92337 0.95485 0.92996 0.88648 0.85207 0.89524 0.91251 0.89332 0.89533 0.90062 0.90462 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.40 9.18 71.98 0.66 -6.74 16 2 C -0.10 -4.96 5.28 30.60 0.16 -4.80 16 3 C -0.24 -11.64 2.58 29.85 0.08 -11.56 16 4 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 5 C -0.51 -27.12 6.93 25.60 0.18 -26.94 16 6 H 0.06 3.00 7.71 -2.91 -0.02 2.98 16 7 C 0.03 1.60 5.26 84.66 0.45 2.04 16 8 N -0.91 -51.24 11.39 21.45 0.24 -51.00 16 9 Si 0.94 43.11 29.54 68.60 2.03 45.13 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 S 1.33 52.44 13.03 -56.49 -0.74 51.70 16 14 O -0.91 -44.72 13.74 -148.98 -2.05 -46.77 16 15 C -0.46 -16.19 4.62 22.27 0.10 -16.09 16 16 C -0.08 -3.05 8.55 22.27 0.19 -2.86 16 17 C -0.15 -4.57 9.70 22.27 0.22 -4.35 16 18 C -0.07 -1.74 5.88 -19.87 -0.12 -1.85 16 19 C -0.12 -1.93 9.60 71.24 0.68 -1.25 16 20 C -0.11 -2.72 5.88 -19.87 -0.12 -2.83 16 21 C -0.11 -1.77 9.60 71.23 0.68 -1.08 16 22 C -0.05 -1.43 9.41 22.27 0.21 -1.22 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 3.13 4.97 -2.39 -0.01 3.11 16 25 H 0.04 2.32 6.72 -2.39 -0.02 2.30 16 26 H 0.06 3.28 6.25 -2.39 -0.01 3.27 16 27 H 0.03 1.28 6.24 -2.39 -0.01 1.26 16 28 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.10 4.07 6.80 -2.91 -0.02 4.05 16 30 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 33 H 0.09 1.18 5.95 -2.39 -0.01 1.16 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.06 5.95 -2.39 -0.01 1.04 16 36 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 37 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -70.88 305.26 3.92 -66.96 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.06 Total: 13.51 kcal Atomic # 6 Polarization: -82.91 SS G_CDS: 3.38 Total: -79.53 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.24 Total: -51.00 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.05 Total: -46.77 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.74 Total: 51.70 kcal Total: -70.88 3.92 -66.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.814 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds