Wall clock time and date at job start Mon Mar 30 2020 07:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46675 * 2 1 4 4 H 1.09008 * 109.47054 * 175.02528 * 3 2 1 5 5 C 1.50700 * 109.47110 * 55.03065 * 3 2 1 6 6 H 1.07998 * 120.00502 * 239.99588 * 5 3 2 7 7 C 1.37881 * 120.00114 * 59.99621 * 5 3 2 8 8 N 1.31513 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46948 * 120.00018 * 9 7 5 12 12 H 1.48502 * 109.47325 * 239.99954 * 9 7 5 13 13 S 1.81395 * 109.47347 * 295.02863 * 3 2 1 14 14 O 1.42101 * 109.46917 * 194.76357 * 13 3 2 15 15 C 1.76198 * 102.99986 * 303.82021 * 13 3 2 16 16 C 1.38255 * 120.00122 * 95.94764 * 15 13 3 17 17 C 1.38210 * 119.99999 * 180.02562 * 16 15 13 18 18 C 1.38249 * 120.00333 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00286 * 179.97438 * 18 17 16 20 20 C 1.38213 * 119.99798 * 359.97438 * 18 17 16 21 21 C 1.50700 * 120.00054 * 179.97438 * 20 18 17 22 22 C 1.38220 * 120.00032 * 276.22510 * 15 13 3 23 23 H 1.08999 * 109.46879 * 54.61744 * 1 2 3 24 24 H 1.08997 * 109.46674 * 174.61254 * 1 2 3 25 25 H 1.08994 * 109.47415 * 294.60926 * 1 2 3 26 26 H 1.08999 * 109.47681 * 240.00319 * 2 1 3 27 27 H 1.08994 * 109.47526 * 119.99938 * 2 1 3 28 28 H 0.97007 * 120.00175 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.99705 * 0.02562 * 16 15 13 30 30 H 1.08006 * 120.00026 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.46959 * 270.01995 * 19 18 17 32 32 H 1.09001 * 109.47436 * 30.02205 * 19 18 17 33 33 H 1.09002 * 109.47341 * 150.02048 * 19 18 17 34 34 H 1.09009 * 109.47451 * 89.99703 * 21 20 18 35 35 H 1.09007 * 109.47414 * 330.00361 * 21 20 18 36 36 H 1.09000 * 109.47654 * 209.99850 * 21 20 18 37 37 H 1.07997 * 120.00031 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1263 1.4439 0.0891 5 6 1.4395 2.1876 1.1643 6 1 0.8298 3.0617 0.9896 7 6 1.6686 1.7532 2.4527 8 7 2.4115 0.6891 2.6655 9 14 0.9239 2.6763 3.8959 10 1 0.1351 3.8292 3.3921 11 1 0.0348 1.7651 4.6605 12 1 2.0092 3.1679 4.7823 13 16 1.5593 2.2538 -1.5496 14 8 2.3048 3.4533 -1.7073 15 6 2.2454 1.1959 -2.7803 16 6 1.4611 0.2222 -3.3703 17 6 1.9995 -0.6080 -4.3353 18 6 3.3225 -0.4651 -4.7101 19 6 3.9097 -1.3707 -5.7619 20 6 4.1066 0.5083 -4.1203 21 6 5.5489 0.6637 -4.5285 22 6 3.5694 1.3357 -3.1517 23 1 -0.3633 0.5951 -0.8379 24 1 -0.3632 -1.0231 -0.0965 25 1 -0.3634 0.4279 0.9342 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.5724 0.3833 3.5720 29 1 0.4277 0.1103 -3.0772 30 1 1.3869 -1.3689 -4.7959 31 1 4.3299 -2.2563 -5.2853 32 1 3.1287 -1.6701 -6.4608 33 1 4.6953 -0.8406 -6.3004 34 1 5.6182 1.3682 -5.3574 35 1 5.9448 -0.3032 -4.8395 36 1 6.1273 1.0385 -3.6840 37 1 4.1833 2.0936 -2.6879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084258796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:35 Heat of formation + Delta-G solvation = -35.188911 kcal Electronic energy + Delta-G solvation = -18276.284966 eV Core-core repulsion = 15530.401069 eV Total energy + Delta-G solvation = -2745.883898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.18993 -34.97043 -34.53142 -33.18092 -31.89851 -31.30243 -27.50260 -27.13406 -26.23116 -23.85528 -21.91209 -20.78805 -20.22658 -17.25838 -16.09845 -15.71589 -15.52401 -15.06974 -14.58142 -14.17437 -13.71632 -13.58614 -13.42246 -12.92068 -12.81218 -12.56937 -12.43829 -12.20609 -11.99588 -11.65853 -11.41452 -11.18183 -11.02153 -10.90374 -10.71709 -10.61297 -10.35245 -9.97234 -9.81937 -9.16141 -8.91727 -8.56088 -8.51944 -8.32511 -7.18133 -6.10244 -4.21506 1.37442 1.68753 2.80443 3.24179 3.32980 3.37799 3.72115 4.06426 4.34898 4.87634 4.95162 5.00577 5.16949 5.21231 5.36372 5.48822 5.55390 5.65247 5.67627 5.82891 5.90586 5.95695 6.27617 6.30529 6.36213 6.39362 6.48977 6.60021 6.73972 6.81087 6.85237 7.11466 7.26398 7.28771 7.46787 7.65801 7.83601 8.13304 8.78320 9.42170 10.94669 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.005634 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.034939 B = 4968.398590 C = 5115.587750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.221 4.221 4 H 0.045 0.955 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.074 3.926 8 N -0.880 5.880 9 Si 0.894 3.106 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.283 1.283 13 S 1.267 4.733 14 O -0.879 6.879 15 C -0.435 4.435 16 C -0.047 4.047 17 C -0.138 4.138 18 C -0.071 4.071 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.053 4.053 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.094 0.906 28 H 0.262 0.738 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -5.667 -12.908 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 C -0.342 4.342 4 H 0.064 0.936 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.130 4.130 8 N -0.517 5.517 9 Si 0.721 3.279 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.209 1.209 13 S 1.469 4.531 14 O -0.875 6.875 15 C -0.529 4.529 16 C -0.066 4.066 17 C -0.157 4.157 18 C -0.071 4.071 19 C -0.172 4.172 20 C -0.109 4.109 21 C -0.170 4.170 22 C -0.072 4.072 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.743 -4.913 -12.972 14.140 hybrid contribution 2.075 0.061 1.127 2.362 sum -0.668 -4.852 -11.845 12.818 Atomic orbital electron populations 1.21700 0.97080 0.98683 1.01961 1.21213 0.94888 0.96167 1.01271 1.24782 1.02726 1.00679 1.06035 0.93647 1.20392 1.32523 1.11839 0.89471 0.91914 1.24879 0.94683 0.94820 0.98603 1.69902 1.37391 1.23386 1.21013 0.86497 0.79130 0.80032 0.82261 1.19316 1.20651 1.20950 1.68902 1.16606 0.80969 0.86589 1.92967 1.74129 1.36470 1.83925 1.28181 1.00593 1.10428 1.13704 1.20802 0.99274 0.92598 0.93949 1.21042 0.94854 1.00423 0.99393 1.19791 0.94088 0.96057 0.97133 1.20829 1.00980 0.98498 0.96859 1.19804 0.96133 0.96948 0.98005 1.20791 0.92541 1.02006 1.01636 1.21003 0.94558 0.96624 0.94998 0.94266 0.94993 0.91365 0.95668 0.88814 0.92818 0.85008 0.86084 0.91239 0.91650 0.91537 0.91535 0.91578 0.91690 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.38 37.16 0.35 -2.14 16 2 C -0.10 -2.08 5.31 -26.73 -0.14 -2.22 16 3 C -0.22 -5.36 2.55 -27.88 -0.07 -5.44 16 4 H 0.05 1.27 8.14 -51.92 -0.42 0.85 16 5 C -0.50 -13.21 7.20 -34.44 -0.25 -13.46 16 6 H 0.06 1.62 7.71 -52.49 -0.40 1.21 16 7 C 0.07 1.98 5.27 -17.82 -0.09 1.89 16 8 N -0.88 -24.35 11.37 55.43 0.63 -23.71 16 9 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 S 1.27 26.21 11.67 -107.50 -1.25 24.95 16 14 O -0.88 -22.91 17.08 -35.23 -0.60 -23.52 16 15 C -0.43 -8.12 4.64 -39.58 -0.18 -8.30 16 16 C -0.05 -0.72 8.90 -39.59 -0.35 -1.07 16 17 C -0.14 -1.91 9.70 -39.59 -0.38 -2.30 16 18 C -0.07 -1.00 5.88 -104.63 -0.62 -1.62 16 19 C -0.12 -1.19 9.19 36.01 0.33 -0.86 16 20 C -0.11 -1.74 5.88 -104.63 -0.62 -2.35 16 21 C -0.11 -1.47 9.19 36.01 0.33 -1.13 16 22 C -0.05 -1.02 9.10 -39.58 -0.36 -1.38 16 23 H 0.04 0.58 6.96 -51.93 -0.36 0.22 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.37 7.27 -51.93 -0.38 0.99 16 26 H 0.02 0.50 6.37 -51.93 -0.33 0.17 16 27 H 0.09 2.34 6.22 -51.93 -0.32 2.01 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.07 0.72 6.70 -51.93 -0.35 0.37 16 36 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.12 2.53 7.62 -52.49 -0.40 2.13 16 LS Contribution 311.87 15.07 4.70 4.70 Total: -1.00 -33.09 311.87 -9.01 -42.09 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.40 Total: 0.27 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: -2.05 Total: -40.39 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.63 Total: -23.71 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.60 Total: -23.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 26.21 SS G_CDS: -1.25 Total: 24.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.09 -9.01 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.905 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds