Wall clock time and date at job start Mon Mar 30 2020 07:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46675 * 2 1 4 4 H 1.09008 * 109.47054 * 175.02528 * 3 2 1 5 5 C 1.50700 * 109.47110 * 55.03065 * 3 2 1 6 6 H 1.07998 * 120.00502 * 239.99588 * 5 3 2 7 7 C 1.37881 * 120.00114 * 59.99621 * 5 3 2 8 8 N 1.31513 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46948 * 120.00018 * 9 7 5 12 12 H 1.48502 * 109.47325 * 239.99954 * 9 7 5 13 13 S 1.81395 * 109.47347 * 295.02863 * 3 2 1 14 14 O 1.42101 * 109.46917 * 194.76357 * 13 3 2 15 15 C 1.76198 * 102.99986 * 303.82021 * 13 3 2 16 16 C 1.38255 * 120.00122 * 95.94764 * 15 13 3 17 17 C 1.38210 * 119.99999 * 180.02562 * 16 15 13 18 18 C 1.38249 * 120.00333 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00286 * 179.97438 * 18 17 16 20 20 C 1.38213 * 119.99798 * 359.97438 * 18 17 16 21 21 C 1.50700 * 120.00054 * 179.97438 * 20 18 17 22 22 C 1.38220 * 120.00032 * 276.22510 * 15 13 3 23 23 H 1.08999 * 109.46879 * 54.61744 * 1 2 3 24 24 H 1.08997 * 109.46674 * 174.61254 * 1 2 3 25 25 H 1.08994 * 109.47415 * 294.60926 * 1 2 3 26 26 H 1.08999 * 109.47681 * 240.00319 * 2 1 3 27 27 H 1.08994 * 109.47526 * 119.99938 * 2 1 3 28 28 H 0.97007 * 120.00175 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.99705 * 0.02562 * 16 15 13 30 30 H 1.08006 * 120.00026 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.46959 * 270.01995 * 19 18 17 32 32 H 1.09001 * 109.47436 * 30.02205 * 19 18 17 33 33 H 1.09002 * 109.47341 * 150.02048 * 19 18 17 34 34 H 1.09009 * 109.47451 * 89.99703 * 21 20 18 35 35 H 1.09007 * 109.47414 * 330.00361 * 21 20 18 36 36 H 1.09000 * 109.47654 * 209.99850 * 21 20 18 37 37 H 1.07997 * 120.00031 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1263 1.4439 0.0891 5 6 1.4395 2.1876 1.1643 6 1 0.8298 3.0617 0.9896 7 6 1.6686 1.7532 2.4527 8 7 2.4115 0.6891 2.6655 9 14 0.9239 2.6763 3.8959 10 1 0.1351 3.8292 3.3921 11 1 0.0348 1.7651 4.6605 12 1 2.0092 3.1679 4.7823 13 16 1.5593 2.2538 -1.5496 14 8 2.3048 3.4533 -1.7073 15 6 2.2454 1.1959 -2.7803 16 6 1.4611 0.2222 -3.3703 17 6 1.9995 -0.6080 -4.3353 18 6 3.3225 -0.4651 -4.7101 19 6 3.9097 -1.3707 -5.7619 20 6 4.1066 0.5083 -4.1203 21 6 5.5489 0.6637 -4.5285 22 6 3.5694 1.3357 -3.1517 23 1 -0.3633 0.5951 -0.8379 24 1 -0.3632 -1.0231 -0.0965 25 1 -0.3634 0.4279 0.9342 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.5724 0.3833 3.5720 29 1 0.4277 0.1103 -3.0772 30 1 1.3869 -1.3689 -4.7959 31 1 4.3299 -2.2563 -5.2853 32 1 3.1287 -1.6701 -6.4608 33 1 4.6953 -0.8406 -6.3004 34 1 5.6182 1.3682 -5.3574 35 1 5.9448 -0.3032 -4.8395 36 1 6.1273 1.0385 -3.6840 37 1 4.1833 2.0936 -2.6879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084258796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:35 Heat of formation + Delta-G solvation = -56.154361 kcal Electronic energy + Delta-G solvation = -18277.194097 eV Core-core repulsion = 15530.401069 eV Total energy + Delta-G solvation = -2746.793028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39350 -36.84856 -36.45100 -34.38109 -33.21727 -33.02728 -28.98611 -28.56133 -27.35799 -25.72156 -23.13308 -22.06602 -21.95648 -18.86771 -18.01728 -17.23437 -16.96977 -16.71325 -15.92582 -15.61849 -15.35261 -15.06384 -14.76663 -14.45194 -14.07013 -13.94495 -13.67962 -13.51649 -13.17355 -12.98935 -12.91685 -12.79693 -12.68965 -12.45250 -12.36148 -12.11047 -11.89462 -11.66384 -11.51458 -11.03886 -10.69739 -10.54812 -9.82098 -9.57152 -9.01149 -8.13236 -6.32150 0.05824 0.44167 1.19922 1.39636 1.43025 1.54687 2.12680 2.40761 2.70706 3.09793 3.24519 3.81808 3.94836 4.06221 4.32162 4.39443 4.58241 4.65008 4.66020 4.74527 4.77937 4.81003 4.81963 4.88345 4.97166 5.19584 5.26804 5.28229 5.34483 5.41957 5.44494 5.50470 5.62714 5.64845 5.85123 5.99867 6.10800 6.21275 6.75522 7.34838 8.90704 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.005634 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.034939 B = 4968.398590 C = 5115.587750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.235 4.235 4 H -0.015 1.015 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.027 3.973 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.260 1.260 11 H -0.266 1.266 12 H -0.290 1.290 13 S 1.333 4.667 14 O -0.942 6.942 15 C -0.461 4.461 16 C -0.045 4.045 17 C -0.132 4.132 18 C -0.065 4.065 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.091 4.091 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.262 0.738 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -7.838 -15.366 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.355 4.355 4 H 0.004 0.996 5 C -0.557 4.557 6 H 0.081 0.919 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.777 3.223 10 H -0.184 1.184 11 H -0.191 1.191 12 H -0.216 1.216 13 S 1.538 4.462 14 O -0.938 6.938 15 C -0.558 4.558 16 C -0.064 4.064 17 C -0.151 4.151 18 C -0.065 4.065 19 C -0.171 4.171 20 C -0.122 4.122 21 C -0.169 4.169 22 C -0.110 4.110 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.695 -7.062 -15.397 17.578 hybrid contribution 2.776 0.634 1.703 3.318 sum -1.919 -6.428 -13.693 15.248 Atomic orbital electron populations 1.21674 0.93942 1.01181 1.02328 1.21070 0.97575 0.93821 1.00173 1.24930 0.98842 1.03111 1.08573 0.99625 1.20727 1.32432 1.11924 0.90621 0.91888 1.25665 0.95080 0.95539 1.01166 1.70054 1.38578 1.24750 1.21418 0.85590 0.78372 0.79286 0.79089 1.18406 1.19118 1.21633 1.67828 1.14927 0.79051 0.84381 1.92841 1.75666 1.40579 1.84741 1.27713 1.01216 1.12498 1.14417 1.21280 1.00576 0.91024 0.93507 1.21603 0.95087 1.00288 0.98120 1.20368 0.94262 0.95044 0.96807 1.20940 1.02046 0.97993 0.96093 1.20128 0.97863 0.96866 0.97319 1.20852 0.90775 1.03804 1.01503 1.20931 0.95059 0.97657 0.97355 0.90853 0.91917 0.93565 0.94037 0.92583 0.92869 0.81268 0.81567 0.89933 0.89135 0.90554 0.90217 0.88850 0.93212 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.38 71.98 0.68 -3.97 16 2 C -0.09 -3.82 5.31 30.60 0.16 -3.66 16 3 C -0.23 -11.99 2.55 29.85 0.08 -11.92 16 4 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 5 C -0.52 -28.27 7.20 25.60 0.18 -28.09 16 6 H 0.06 3.34 7.71 -2.91 -0.02 3.32 16 7 C 0.03 1.46 5.27 84.66 0.45 1.91 16 8 N -0.91 -52.54 11.37 21.45 0.24 -52.29 16 9 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 S 1.33 56.86 11.67 -56.49 -0.66 56.20 16 14 O -0.94 -52.02 17.08 -148.98 -2.54 -54.57 16 15 C -0.46 -17.23 4.64 22.27 0.10 -17.13 16 16 C -0.05 -1.23 8.90 22.27 0.20 -1.03 16 17 C -0.13 -3.03 9.70 22.27 0.22 -2.82 16 18 C -0.06 -1.60 5.88 -19.87 -0.12 -1.72 16 19 C -0.11 -1.78 9.19 71.24 0.65 -1.12 16 20 C -0.12 -3.79 5.88 -19.87 -0.12 -3.91 16 21 C -0.11 -2.84 9.19 71.24 0.65 -2.18 16 22 C -0.09 -3.66 9.10 22.27 0.20 -3.46 16 23 H 0.07 1.99 6.96 -2.39 -0.02 1.97 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.81 7.27 -2.39 -0.02 1.79 16 26 H 0.04 1.64 6.37 -2.39 -0.02 1.62 16 27 H 0.06 2.90 6.22 -2.39 -0.01 2.88 16 28 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 29 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.08 1.07 6.70 -2.39 -0.02 1.06 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.09 1.80 6.70 -2.38 -0.02 1.78 16 36 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.08 3.73 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -78.66 311.87 3.45 -75.20 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.05 Total: 9.47 kcal Atomic # 6 Polarization: -82.43 SS G_CDS: 3.34 Total: -79.09 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.24 Total: -52.29 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -2.54 Total: -54.57 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.66 Total: 56.20 kcal Total: -78.66 3.45 -75.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.050 kcal (2) G-P(sol) polarization free energy of solvation -78.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds