Wall clock time and date at job start Mon Mar 30 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 H 1.09007 * 109.46701 * 181.82665 * 3 2 1 5 5 C 1.50694 * 109.46842 * 301.82745 * 3 2 1 6 6 H 1.08003 * 119.99483 * 120.00433 * 5 3 2 7 7 C 1.37880 * 120.00294 * 299.99951 * 5 3 2 8 8 N 1.31516 * 119.99890 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99746 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47090 * 90.00262 * 9 7 5 11 11 H 1.48509 * 109.46901 * 209.99869 * 9 7 5 12 12 H 1.48493 * 109.47469 * 329.99897 * 9 7 5 13 13 S 1.81399 * 109.47035 * 61.83255 * 3 2 1 14 14 O 1.42104 * 109.46845 * 165.64052 * 13 3 2 15 15 C 1.76196 * 103.00245 * 56.58419 * 13 3 2 16 16 C 1.38261 * 119.99854 * 263.85555 * 15 13 3 17 17 C 1.38213 * 119.99918 * 179.76639 * 16 15 13 18 18 C 1.38255 * 119.99738 * 0.50845 * 17 16 15 19 19 C 1.50707 * 119.99586 * 179.72304 * 18 17 16 20 20 C 1.38207 * 120.00486 * 359.74603 * 18 17 16 21 21 C 1.50698 * 120.00616 * 179.97438 * 20 18 17 22 22 C 1.38205 * 120.00336 * 84.12935 * 15 13 3 23 23 H 1.09001 * 109.46704 * 55.20939 * 1 2 3 24 24 H 1.09006 * 109.46839 * 295.21148 * 1 2 3 25 25 H 1.08997 * 109.47423 * 175.21536 * 1 2 3 26 26 H 1.09005 * 109.47142 * 119.99900 * 2 1 3 27 27 H 1.09000 * 109.47356 * 239.99799 * 2 1 3 28 28 H 0.97001 * 119.99910 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.99871 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.99811 * 180.22933 * 17 16 15 31 31 H 1.08995 * 109.47249 * 270.01974 * 19 18 17 32 32 H 1.09002 * 109.47266 * 30.02271 * 19 18 17 33 33 H 1.08997 * 109.46860 * 150.02051 * 19 18 17 34 34 H 1.08993 * 109.46949 * 270.02212 * 21 20 18 35 35 H 1.08999 * 109.46801 * 30.01937 * 21 20 18 36 36 H 1.09004 * 109.47145 * 150.01818 * 21 20 18 37 37 H 1.08005 * 119.99889 * 0.02562 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4425 -0.0328 5 6 1.5010 2.1658 -1.2072 6 1 0.8836 3.0427 -1.0800 7 6 1.7962 1.7081 -2.4738 8 7 1.3262 2.3397 -3.5273 9 14 2.8636 0.1910 -2.6935 10 1 2.0034 -1.0190 -2.7262 11 1 3.6178 0.2968 -3.9685 12 1 3.8183 0.0891 -1.5608 13 16 1.4804 2.2817 1.5077 14 8 2.2110 3.4887 1.6768 15 6 2.1118 1.2531 2.7915 16 6 1.3036 0.2892 3.3654 17 6 1.8003 -0.5208 4.3691 18 6 3.1020 -0.3602 4.8064 19 6 3.6416 -1.2394 5.9051 20 6 3.9082 0.6068 4.2363 21 6 5.3269 0.7823 4.7134 22 6 3.4130 1.4136 3.2287 23 1 -0.3633 0.5864 -0.8440 24 1 -0.3633 0.4378 0.9298 25 1 -0.3634 -1.0240 -0.0857 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.5335 2.0175 -4.4185 29 1 0.2852 0.1671 3.0271 30 1 1.1702 -1.2762 4.8148 31 1 3.4520 -0.7714 6.8710 32 1 3.1481 -2.2106 5.8687 33 1 4.7150 -1.3720 5.7701 34 1 5.3490 1.5042 5.5297 35 1 5.7132 -0.1747 5.0641 36 1 5.9445 1.1442 3.8913 37 1 4.0428 2.1698 2.7837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084258802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:37 Heat of formation + Delta-G solvation = -25.732721 kcal Electronic energy + Delta-G solvation = -18371.111728 eV Core-core repulsion = 15625.637882 eV Total energy + Delta-G solvation = -2745.473847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.31702 -35.24575 -34.71556 -33.29801 -32.01642 -31.77253 -27.65881 -27.51360 -26.36082 -23.53974 -22.02951 -20.97324 -20.73559 -17.33201 -16.42223 -15.87329 -15.63577 -15.34906 -14.76749 -14.30206 -13.89041 -13.77310 -13.43126 -13.22671 -12.89600 -12.80914 -12.69999 -12.49306 -12.00313 -11.84380 -11.63087 -11.37918 -11.16504 -10.96212 -10.79986 -10.76311 -10.44584 -10.17784 -9.69642 -9.30331 -9.05764 -8.68825 -8.63872 -8.47282 -7.39671 -6.19204 -4.21987 1.23533 1.56013 2.63382 3.20089 3.32803 3.34615 3.55248 3.91509 4.32997 4.71605 4.83666 4.89147 5.05731 5.12054 5.18787 5.40164 5.44541 5.52712 5.61223 5.76636 5.81032 5.84875 5.87958 5.97707 6.08919 6.18624 6.25374 6.46481 6.52885 6.59807 6.70134 6.71523 6.83138 6.91077 7.16169 7.23222 7.51850 8.21458 8.76151 9.40893 10.91953 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.006355 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.604728 B = 4404.931321 C = 4506.544383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.274 4.274 4 H 0.047 0.953 5 C -0.500 4.500 6 H 0.082 0.918 7 C 0.086 3.914 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.297 1.297 12 H -0.269 1.269 13 S 1.307 4.693 14 O -0.869 6.869 15 C -0.446 4.446 16 C -0.047 4.047 17 C -0.138 4.138 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.053 4.053 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -8.984 15.896 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.395 4.395 4 H 0.065 0.935 5 C -0.539 4.539 6 H 0.100 0.900 7 C -0.118 4.118 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.200 1.200 11 H -0.224 1.224 12 H -0.195 1.195 13 S 1.507 4.493 14 O -0.865 6.865 15 C -0.541 4.541 16 C -0.066 4.066 17 C -0.157 4.157 18 C -0.069 4.069 19 C -0.174 4.174 20 C -0.109 4.109 21 C -0.172 4.172 22 C -0.072 4.072 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.984 -8.110 15.843 17.825 hybrid contribution 2.995 -1.170 -0.430 3.244 sum 2.012 -9.280 15.413 18.103 Atomic orbital electron populations 1.21813 0.95299 1.00641 1.02915 1.21513 0.96993 0.96041 0.99791 1.25313 1.02954 1.00812 1.10384 0.93492 1.20122 1.33307 1.12991 0.87501 0.90026 1.24854 0.94810 0.96623 0.95546 1.69866 1.44512 1.39994 0.98310 0.86817 0.81120 0.83517 0.76838 1.20033 1.22415 1.19468 1.69164 1.15807 0.80469 0.83847 1.92983 1.74483 1.35886 1.83155 1.28299 1.00503 1.10466 1.14804 1.20839 0.99113 0.92581 0.94099 1.21066 0.95155 1.00677 0.98766 1.19814 0.94127 0.96032 0.96887 1.20878 1.01435 0.98470 0.96613 1.19817 0.96354 0.97033 0.97688 1.20834 0.92776 1.02108 1.01462 1.21030 0.94799 0.96551 0.94812 0.89741 0.93244 0.94090 0.93754 0.93207 0.92288 0.84810 0.85950 0.91189 0.91603 0.91289 0.91376 0.91363 0.91737 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.43 37.16 0.35 -2.15 16 2 C -0.10 -2.09 5.01 -26.73 -0.13 -2.22 16 3 C -0.27 -6.31 2.13 -27.89 -0.06 -6.37 16 4 H 0.05 1.19 7.20 -51.92 -0.37 0.81 16 5 C -0.50 -13.45 7.73 -34.44 -0.27 -13.71 16 6 H 0.08 2.33 7.96 -52.48 -0.42 1.91 16 7 C 0.09 2.41 5.45 -17.82 -0.10 2.31 16 8 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 9 Si 0.89 21.84 24.35 -169.99 -4.14 17.70 16 10 H -0.27 -6.38 6.88 56.52 0.39 -5.99 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.60 6.53 56.52 0.37 -6.23 16 13 S 1.31 25.81 11.66 -107.50 -1.25 24.56 16 14 O -0.87 -21.96 17.07 -35.23 -0.60 -22.57 16 15 C -0.45 -7.79 4.65 -39.59 -0.18 -7.98 16 16 C -0.05 -0.66 9.03 -39.58 -0.36 -1.02 16 17 C -0.14 -1.75 9.70 -39.58 -0.38 -2.14 16 18 C -0.07 -0.90 5.88 -104.62 -0.62 -1.52 16 19 C -0.12 -1.12 9.60 36.01 0.35 -0.77 16 20 C -0.11 -1.62 5.88 -104.63 -0.62 -2.24 16 21 C -0.12 -1.39 9.60 36.00 0.35 -1.04 16 22 C -0.05 -0.96 9.10 -39.58 -0.36 -1.32 16 23 H 0.08 1.62 6.99 -51.93 -0.36 1.25 16 24 H 0.05 0.65 6.47 -51.93 -0.34 0.31 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.79 6.59 -51.93 -0.34 0.44 16 27 H 0.05 1.08 3.31 -51.93 -0.17 0.91 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.13 1.43 7.35 -52.49 -0.39 1.05 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.60 5.95 -51.93 -0.31 0.30 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.68 5.95 -51.93 -0.31 0.37 16 36 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.12 2.40 7.61 -52.48 -0.40 2.00 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -34.46 303.11 -7.80 -42.26 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.12 Total: -0.83 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: -2.03 Total: -40.17 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.77 Total: -25.52 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.60 Total: -22.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.70 kcal Atomic # 16 Polarization: 25.81 SS G_CDS: -1.25 Total: 24.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.46 -7.80 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.529 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds