Wall clock time and date at job start Mon Mar 30 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47365 * 2 1 4 4 H 1.09007 * 109.46701 * 181.82665 * 3 2 1 5 5 C 1.50694 * 109.46842 * 301.82745 * 3 2 1 6 6 H 1.08003 * 119.99483 * 120.00433 * 5 3 2 7 7 C 1.37880 * 120.00294 * 299.99951 * 5 3 2 8 8 N 1.31516 * 119.99890 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99746 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47090 * 90.00262 * 9 7 5 11 11 H 1.48509 * 109.46901 * 209.99869 * 9 7 5 12 12 H 1.48493 * 109.47469 * 329.99897 * 9 7 5 13 13 S 1.81399 * 109.47035 * 61.83255 * 3 2 1 14 14 O 1.42104 * 109.46845 * 165.64052 * 13 3 2 15 15 C 1.76196 * 103.00245 * 56.58419 * 13 3 2 16 16 C 1.38261 * 119.99854 * 263.85555 * 15 13 3 17 17 C 1.38213 * 119.99918 * 179.76639 * 16 15 13 18 18 C 1.38255 * 119.99738 * 0.50845 * 17 16 15 19 19 C 1.50707 * 119.99586 * 179.72304 * 18 17 16 20 20 C 1.38207 * 120.00486 * 359.74603 * 18 17 16 21 21 C 1.50698 * 120.00616 * 179.97438 * 20 18 17 22 22 C 1.38205 * 120.00336 * 84.12935 * 15 13 3 23 23 H 1.09001 * 109.46704 * 55.20939 * 1 2 3 24 24 H 1.09006 * 109.46839 * 295.21148 * 1 2 3 25 25 H 1.08997 * 109.47423 * 175.21536 * 1 2 3 26 26 H 1.09005 * 109.47142 * 119.99900 * 2 1 3 27 27 H 1.09000 * 109.47356 * 239.99799 * 2 1 3 28 28 H 0.97001 * 119.99910 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.99871 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.99811 * 180.22933 * 17 16 15 31 31 H 1.08995 * 109.47249 * 270.01974 * 19 18 17 32 32 H 1.09002 * 109.47266 * 30.02271 * 19 18 17 33 33 H 1.08997 * 109.46860 * 150.02051 * 19 18 17 34 34 H 1.08993 * 109.46949 * 270.02212 * 21 20 18 35 35 H 1.08999 * 109.46801 * 30.01937 * 21 20 18 36 36 H 1.09004 * 109.47145 * 150.01818 * 21 20 18 37 37 H 1.08005 * 119.99889 * 0.02562 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4425 -0.0328 5 6 1.5010 2.1658 -1.2072 6 1 0.8836 3.0427 -1.0800 7 6 1.7962 1.7081 -2.4738 8 7 1.3262 2.3397 -3.5273 9 14 2.8636 0.1910 -2.6935 10 1 2.0034 -1.0190 -2.7262 11 1 3.6178 0.2968 -3.9685 12 1 3.8183 0.0891 -1.5608 13 16 1.4804 2.2817 1.5077 14 8 2.2110 3.4887 1.6768 15 6 2.1118 1.2531 2.7915 16 6 1.3036 0.2892 3.3654 17 6 1.8003 -0.5208 4.3691 18 6 3.1020 -0.3602 4.8064 19 6 3.6416 -1.2394 5.9051 20 6 3.9082 0.6068 4.2363 21 6 5.3269 0.7823 4.7134 22 6 3.4130 1.4136 3.2287 23 1 -0.3633 0.5864 -0.8440 24 1 -0.3633 0.4378 0.9298 25 1 -0.3634 -1.0240 -0.0857 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.5335 2.0175 -4.4185 29 1 0.2852 0.1671 3.0271 30 1 1.1702 -1.2762 4.8148 31 1 3.4520 -0.7714 6.8710 32 1 3.1481 -2.2106 5.8687 33 1 4.7150 -1.3720 5.7701 34 1 5.3490 1.5042 5.5297 35 1 5.7132 -0.1747 5.0641 36 1 5.9445 1.1442 3.8913 37 1 4.0428 2.1698 2.7837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084258802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:37 Heat of formation + Delta-G solvation = -49.535211 kcal Electronic energy + Delta-G solvation = -18372.143882 eV Core-core repulsion = 15625.637882 eV Total energy + Delta-G solvation = -2746.506000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41635 -37.02583 -36.56480 -34.43490 -33.74051 -33.05189 -29.32960 -28.56859 -27.38688 -25.38329 -23.14168 -22.55921 -21.99882 -18.92701 -18.30710 -17.28013 -17.21671 -16.76684 -16.00993 -15.59770 -15.54517 -15.15602 -14.82122 -14.72942 -14.53311 -13.99064 -13.67998 -13.62402 -13.37959 -13.15872 -12.85707 -12.77900 -12.69932 -12.46802 -12.33113 -12.22048 -11.88733 -11.82713 -11.48531 -11.17585 -10.86488 -10.64107 -9.84570 -9.60709 -9.10520 -8.36004 -6.41465 0.01677 0.42763 1.10290 1.22189 1.29848 1.38065 2.04129 2.26894 2.68232 2.95646 3.16470 3.81175 3.94121 4.04901 4.23492 4.28806 4.39248 4.42860 4.51404 4.58545 4.63809 4.77948 4.82095 4.94087 4.96276 5.00629 5.09629 5.14814 5.28594 5.31672 5.36125 5.42146 5.43590 5.56033 5.65441 5.87075 6.03949 6.09214 6.60320 7.24086 8.78652 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.006355 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.604728 B = 4404.931321 C = 4506.544383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.287 4.287 4 H 0.013 0.987 5 C -0.498 4.498 6 H 0.050 0.950 7 C 0.035 3.965 8 N -0.935 5.935 9 Si 0.939 3.061 10 H -0.245 1.245 11 H -0.302 1.302 12 H -0.273 1.273 13 S 1.360 4.640 14 O -0.936 6.936 15 C -0.467 4.467 16 C -0.043 4.043 17 C -0.131 4.131 18 C -0.062 4.062 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.089 4.089 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.269 0.731 29 H 0.173 0.827 30 H 0.167 0.833 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 -12.946 19.149 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.406 4.406 4 H 0.031 0.969 5 C -0.537 4.537 6 H 0.069 0.931 7 C -0.165 4.165 8 N -0.575 5.575 9 Si 0.767 3.233 10 H -0.169 1.169 11 H -0.230 1.230 12 H -0.199 1.199 13 S 1.564 4.436 14 O -0.932 6.932 15 C -0.565 4.565 16 C -0.062 4.062 17 C -0.150 4.150 18 C -0.063 4.063 19 C -0.173 4.173 20 C -0.122 4.122 21 C -0.172 4.172 22 C -0.108 4.108 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.190 0.810 30 H 0.185 0.815 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.859 -12.059 19.065 22.635 hybrid contribution 3.292 0.052 -1.222 3.512 sum 1.433 -12.006 17.843 21.554 Atomic orbital electron populations 1.21842 0.92719 1.02559 1.03668 1.21489 0.99291 0.93083 1.00195 1.25418 1.00679 1.03488 1.11029 0.96896 1.20335 1.32078 1.12023 0.89285 0.93146 1.25587 0.96097 0.99465 0.95376 1.69988 1.46605 1.42013 0.98859 0.85973 0.79784 0.81475 0.76054 1.16934 1.22963 1.19865 1.68141 1.14245 0.78766 0.82495 1.92864 1.75896 1.40143 1.84296 1.27740 1.01277 1.12462 1.15060 1.21319 1.00237 0.90867 0.93763 1.21611 0.95327 1.00546 0.97492 1.20367 0.94189 0.94932 0.96762 1.20984 1.02006 0.98699 0.95618 1.20112 0.97995 0.97017 0.97027 1.20897 0.91207 1.03821 1.01278 1.20960 0.95251 0.97509 0.97125 0.92811 0.89569 0.90818 0.90994 0.94955 0.92175 0.80950 0.81526 0.89574 0.89391 0.90583 0.90376 0.88661 0.93128 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.43 71.98 0.68 -3.95 16 2 C -0.10 -3.90 5.01 30.59 0.15 -3.74 16 3 C -0.29 -13.56 2.13 29.85 0.06 -13.49 16 4 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 5 C -0.50 -28.05 7.73 25.60 0.20 -27.85 16 6 H 0.05 3.07 7.96 -2.91 -0.02 3.05 16 7 C 0.03 2.01 5.45 84.66 0.46 2.47 16 8 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 9 Si 0.94 45.83 24.35 68.60 1.67 47.50 16 10 H -0.24 -10.71 6.88 99.48 0.68 -10.02 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.27 -13.34 6.53 99.48 0.65 -12.69 16 13 S 1.36 55.01 11.66 -56.49 -0.66 54.35 16 14 O -0.94 -50.23 17.07 -148.98 -2.54 -52.78 16 15 C -0.47 -15.85 4.65 22.27 0.10 -15.74 16 16 C -0.04 -1.02 9.03 22.27 0.20 -0.82 16 17 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 18 C -0.06 -1.36 5.88 -19.87 -0.12 -1.48 16 19 C -0.12 -1.55 9.60 71.24 0.68 -0.87 16 20 C -0.12 -3.42 5.88 -19.87 -0.12 -3.54 16 21 C -0.12 -2.62 9.60 71.24 0.68 -1.94 16 22 C -0.09 -3.29 9.10 22.27 0.20 -3.09 16 23 H 0.05 2.01 6.99 -2.39 -0.02 1.99 16 24 H 0.09 1.94 6.47 -2.38 -0.02 1.92 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 2.33 6.59 -2.38 -0.02 2.32 16 27 H 0.03 1.34 3.31 -2.39 -0.01 1.34 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.17 2.64 7.35 -2.91 -0.02 2.62 16 30 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.08 0.94 5.95 -2.39 -0.01 0.92 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.60 5.95 -2.39 -0.01 1.59 16 36 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 37 H 0.08 3.58 7.61 -2.91 -0.02 3.56 16 Total: -1.00 -81.63 303.11 3.16 -78.46 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.98 Total: 6.13 kcal Atomic # 6 Polarization: -79.82 SS G_CDS: 3.41 Total: -76.41 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.30 Total: -57.27 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.54 Total: -52.78 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.66 Total: 54.35 kcal Total: -81.63 3.16 -78.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.930 kcal (2) G-P(sol) polarization free energy of solvation -81.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds