Wall clock time and date at job start Mon Mar 30 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46696 * 2 1 4 4 H 1.09003 * 109.47375 * 171.79354 * 3 2 1 5 5 C 1.50692 * 109.47622 * 51.78995 * 3 2 1 6 6 H 1.07996 * 120.00565 * 240.00486 * 5 3 2 7 7 C 1.37880 * 119.99941 * 59.99609 * 5 3 2 8 8 N 1.31509 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00067 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46743 * 90.00506 * 9 7 5 11 11 H 1.48496 * 109.47245 * 210.00062 * 9 7 5 12 12 H 1.48502 * 109.47231 * 330.00393 * 9 7 5 13 13 S 1.81403 * 109.47177 * 291.78711 * 3 2 1 14 14 O 1.42104 * 109.46803 * 40.78620 * 13 3 2 15 15 C 1.76198 * 103.00223 * 291.72962 * 13 3 2 16 16 C 1.38257 * 120.00215 * 86.90242 * 15 13 3 17 17 C 1.38210 * 120.00183 * 180.02562 * 16 15 13 18 18 C 1.38255 * 120.00231 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00435 * 179.97438 * 18 17 16 20 20 C 1.38212 * 119.99781 * 0.02562 * 18 17 16 21 21 C 1.50705 * 120.00377 * 179.97438 * 20 18 17 22 22 C 1.38210 * 119.99943 * 267.18366 * 15 13 3 23 23 H 1.08999 * 109.46879 * 58.99268 * 1 2 3 24 24 H 1.08997 * 109.46674 * 178.98778 * 1 2 3 25 25 H 1.08994 * 109.47415 * 298.98450 * 1 2 3 26 26 H 1.09001 * 109.47498 * 240.00001 * 2 1 3 27 27 H 1.08998 * 109.47048 * 119.99260 * 2 1 3 28 28 H 0.97003 * 120.00345 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.99924 * 0.02562 * 16 15 13 30 30 H 1.08000 * 119.99973 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47369 * 270.02957 * 19 18 17 32 32 H 1.09007 * 109.46899 * 30.02495 * 19 18 17 33 33 H 1.09000 * 109.47127 * 150.02398 * 19 18 17 34 34 H 1.08994 * 109.46931 * 89.99457 * 21 20 18 35 35 H 1.09002 * 109.46363 * 329.99898 * 21 20 18 36 36 H 1.08992 * 109.47158 * 210.00107 * 21 20 18 37 37 H 1.08003 * 120.00406 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1200 1.4462 0.1467 5 6 1.3788 2.2091 1.1163 6 1 0.7797 3.0794 0.8929 7 6 1.5387 1.7993 2.4230 8 7 2.2686 0.7397 2.6952 9 14 0.7187 2.7491 3.8068 10 1 -0.6337 2.1891 4.0579 11 1 1.5385 2.6345 5.0396 12 1 0.5990 4.1787 3.4230 13 16 1.6429 2.2242 -1.5881 14 8 0.3360 1.8392 -1.9919 15 6 2.6786 1.3627 -2.7238 16 6 2.2422 0.1843 -3.3004 17 6 3.0548 -0.4917 -4.1909 18 6 4.3038 0.0107 -4.5055 19 6 5.1900 -0.7267 -5.4760 20 6 4.7401 1.1887 -3.9291 21 6 6.1018 1.7361 -4.2716 22 6 3.9295 1.8619 -3.0339 23 1 -0.3633 0.5294 -0.8808 24 1 -0.3632 -1.0275 -0.0182 25 1 -0.3634 0.4979 0.8989 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.3815 0.4516 3.6146 29 1 1.2663 -0.2079 -3.0550 30 1 2.7140 -1.4124 -4.6410 31 1 5.8132 -1.4364 -4.9319 32 1 4.5725 -1.2632 -6.1964 33 1 5.8253 -0.0138 -6.0016 34 1 6.0205 2.4002 -5.1320 35 1 6.7747 0.9126 -4.5105 36 1 6.4949 2.2911 -3.4199 37 1 4.2721 2.7803 -2.5804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084258805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:40 Heat of formation + Delta-G solvation = -29.213212 kcal Electronic energy + Delta-G solvation = -18293.734160 eV Core-core repulsion = 15548.109388 eV Total energy + Delta-G solvation = -2745.624772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.18285 -35.14809 -34.34445 -33.13062 -31.93295 -31.19992 -27.50497 -26.94530 -26.25162 -23.77465 -21.93232 -20.75787 -20.08535 -17.28335 -16.16575 -15.79958 -15.48170 -15.15000 -14.59547 -14.17728 -13.94208 -13.48139 -13.14593 -12.86132 -12.82819 -12.49011 -12.21017 -12.00929 -11.84893 -11.70166 -11.37229 -11.23137 -10.96591 -10.86047 -10.70319 -10.47722 -10.41078 -9.91941 -9.67882 -9.11418 -8.78467 -8.54756 -8.45010 -8.31709 -7.09881 -6.06808 -4.18801 1.37760 1.68622 2.83294 3.26639 3.33761 3.36630 3.73312 4.09997 4.36183 4.84404 4.93727 4.99738 5.17088 5.23614 5.35147 5.46755 5.54909 5.65166 5.69884 5.82831 5.89662 5.94459 6.29705 6.36788 6.47366 6.58794 6.62775 6.71487 6.76187 6.80570 7.23043 7.29102 7.30696 7.37772 7.69671 7.72048 7.92565 8.17394 8.80258 9.44314 10.96939 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.005618 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.382011 B = 4982.560411 C = 5187.344226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.222 4.222 4 H 0.072 0.928 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.075 3.925 8 N -0.879 5.879 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.269 1.269 13 S 1.266 4.734 14 O -0.863 6.863 15 C -0.436 4.436 16 C -0.053 4.053 17 C -0.138 4.138 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.047 4.047 23 H 0.083 0.917 24 H 0.013 0.987 25 H 0.059 0.941 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.262 0.738 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 2.040 -11.968 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.142 4.142 3 C -0.343 4.343 4 H 0.090 0.910 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.129 4.129 8 N -0.516 5.516 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.194 1.194 13 S 1.468 4.532 14 O -0.859 6.859 15 C -0.531 4.531 16 C -0.072 4.072 17 C -0.157 4.157 18 C -0.070 4.070 19 C -0.172 4.172 20 C -0.112 4.112 21 C -0.168 4.168 22 C -0.066 4.066 23 H 0.102 0.898 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.080 2.659 -12.084 14.256 hybrid contribution -0.709 -2.137 0.928 2.436 sum 6.372 0.522 -11.156 12.858 Atomic orbital electron populations 1.22126 0.97084 0.98537 1.04332 1.21368 0.95490 0.97286 1.00055 1.24765 1.02978 1.00328 1.06191 0.91009 1.20326 1.31966 1.12086 0.89844 0.91937 1.24874 0.94755 0.94824 0.98459 1.69908 1.38358 1.23853 1.19435 0.86580 0.79445 0.80553 0.81465 1.20595 1.21095 1.19377 1.68914 0.85319 1.12764 0.86156 1.92892 1.32248 1.81692 1.79051 1.28226 1.06963 1.05184 1.12699 1.21096 0.98918 0.93307 0.93865 1.21046 0.94527 1.00234 0.99928 1.19789 0.94884 0.94990 0.97381 1.20831 0.98871 0.99849 0.97634 1.19801 0.96854 0.95692 0.98825 1.20778 0.93300 1.00873 1.01877 1.20715 0.91920 0.98681 0.95268 0.89824 0.96742 0.92165 0.96841 0.89811 0.92835 0.85871 0.86640 0.91257 0.91836 0.91378 0.91520 0.91764 0.91345 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.33 37.16 0.35 -3.75 16 2 C -0.10 -2.57 5.32 -26.73 -0.14 -2.71 16 3 C -0.22 -5.24 2.47 -27.89 -0.07 -5.31 16 4 H 0.07 1.73 8.14 -51.92 -0.42 1.31 16 5 C -0.50 -12.90 7.04 -34.44 -0.24 -13.14 16 6 H 0.06 1.55 7.71 -52.49 -0.40 1.15 16 7 C 0.08 1.99 5.09 -17.82 -0.09 1.90 16 8 N -0.88 -24.32 11.42 55.43 0.63 -23.68 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 S 1.27 24.72 13.02 -107.50 -1.40 23.32 16 14 O -0.86 -20.52 13.55 -35.23 -0.48 -21.00 16 15 C -0.44 -7.89 5.30 -39.58 -0.21 -8.10 16 16 C -0.05 -0.99 8.07 -39.58 -0.32 -1.31 16 17 C -0.14 -2.21 9.70 -39.59 -0.38 -2.59 16 18 C -0.07 -1.00 5.88 -104.63 -0.62 -1.61 16 19 C -0.12 -1.20 9.19 36.00 0.33 -0.87 16 20 C -0.11 -1.54 5.88 -104.62 -0.62 -2.15 16 21 C -0.11 -1.13 9.20 36.01 0.33 -0.80 16 22 C -0.05 -0.71 9.41 -39.58 -0.37 -1.08 16 23 H 0.08 2.15 4.73 -51.93 -0.25 1.90 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 1.59 6.87 -51.93 -0.36 1.24 16 26 H 0.01 0.31 6.20 -51.93 -0.32 -0.01 16 27 H 0.08 2.30 6.34 -51.93 -0.33 1.97 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.12 2.51 7.38 -52.48 -0.39 2.12 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 6.70 -51.93 -0.35 0.23 16 36 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -31.85 306.53 -8.95 -40.80 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.25 Total: 1.99 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: -2.05 Total: -41.53 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.68 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.48 Total: -21.00 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 24.72 SS G_CDS: -1.40 Total: 23.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.85 -8.95 -40.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.586 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds