Wall clock time and date at job start Mon Mar 30 2020 07:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46696 * 2 1 4 4 H 1.09003 * 109.47375 * 171.79354 * 3 2 1 5 5 C 1.50692 * 109.47622 * 51.78995 * 3 2 1 6 6 H 1.07996 * 120.00565 * 240.00486 * 5 3 2 7 7 C 1.37880 * 119.99941 * 59.99609 * 5 3 2 8 8 N 1.31509 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00067 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46743 * 90.00506 * 9 7 5 11 11 H 1.48496 * 109.47245 * 210.00062 * 9 7 5 12 12 H 1.48502 * 109.47231 * 330.00393 * 9 7 5 13 13 S 1.81403 * 109.47177 * 291.78711 * 3 2 1 14 14 O 1.42104 * 109.46803 * 40.78620 * 13 3 2 15 15 C 1.76198 * 103.00223 * 291.72962 * 13 3 2 16 16 C 1.38257 * 120.00215 * 86.90242 * 15 13 3 17 17 C 1.38210 * 120.00183 * 180.02562 * 16 15 13 18 18 C 1.38255 * 120.00231 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00435 * 179.97438 * 18 17 16 20 20 C 1.38212 * 119.99781 * 0.02562 * 18 17 16 21 21 C 1.50705 * 120.00377 * 179.97438 * 20 18 17 22 22 C 1.38210 * 119.99943 * 267.18366 * 15 13 3 23 23 H 1.08999 * 109.46879 * 58.99268 * 1 2 3 24 24 H 1.08997 * 109.46674 * 178.98778 * 1 2 3 25 25 H 1.08994 * 109.47415 * 298.98450 * 1 2 3 26 26 H 1.09001 * 109.47498 * 240.00001 * 2 1 3 27 27 H 1.08998 * 109.47048 * 119.99260 * 2 1 3 28 28 H 0.97003 * 120.00345 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.99924 * 0.02562 * 16 15 13 30 30 H 1.08000 * 119.99973 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47369 * 270.02957 * 19 18 17 32 32 H 1.09007 * 109.46899 * 30.02495 * 19 18 17 33 33 H 1.09000 * 109.47127 * 150.02398 * 19 18 17 34 34 H 1.08994 * 109.46931 * 89.99457 * 21 20 18 35 35 H 1.09002 * 109.46363 * 329.99898 * 21 20 18 36 36 H 1.08992 * 109.47158 * 210.00107 * 21 20 18 37 37 H 1.08003 * 120.00406 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1200 1.4462 0.1467 5 6 1.3788 2.2091 1.1163 6 1 0.7797 3.0794 0.8929 7 6 1.5387 1.7993 2.4230 8 7 2.2686 0.7397 2.6952 9 14 0.7187 2.7491 3.8068 10 1 -0.6337 2.1891 4.0579 11 1 1.5385 2.6345 5.0396 12 1 0.5990 4.1787 3.4230 13 16 1.6429 2.2242 -1.5881 14 8 0.3360 1.8392 -1.9919 15 6 2.6786 1.3627 -2.7238 16 6 2.2422 0.1843 -3.3004 17 6 3.0548 -0.4917 -4.1909 18 6 4.3038 0.0107 -4.5055 19 6 5.1900 -0.7267 -5.4760 20 6 4.7401 1.1887 -3.9291 21 6 6.1018 1.7361 -4.2716 22 6 3.9295 1.8619 -3.0339 23 1 -0.3633 0.5294 -0.8808 24 1 -0.3632 -1.0275 -0.0182 25 1 -0.3634 0.4979 0.8989 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.3815 0.4516 3.6146 29 1 1.2663 -0.2079 -3.0550 30 1 2.7140 -1.4124 -4.6410 31 1 5.8132 -1.4364 -4.9319 32 1 4.5725 -1.2632 -6.1964 33 1 5.8253 -0.0138 -6.0016 34 1 6.0205 2.4002 -5.1320 35 1 6.7747 0.9126 -4.5105 36 1 6.4949 2.2911 -3.4199 37 1 4.2721 2.7803 -2.5804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084258805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:39 Heat of formation + Delta-G solvation = -47.630569 kcal Electronic energy + Delta-G solvation = -18294.532797 eV Core-core repulsion = 15548.109388 eV Total energy + Delta-G solvation = -2746.423409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.34910 -37.02886 -36.22380 -34.28008 -33.21077 -33.01647 -28.96583 -28.49767 -27.31001 -25.74574 -23.08679 -22.15775 -21.89718 -18.81793 -18.07423 -17.28334 -16.99093 -16.64106 -15.95360 -15.75499 -15.25619 -15.01026 -14.65693 -14.13241 -14.01593 -13.66583 -13.59856 -13.49101 -13.35105 -12.97972 -12.80922 -12.75816 -12.70410 -12.48186 -12.37424 -12.10541 -11.87391 -11.81860 -11.63061 -11.07986 -10.59428 -10.37937 -9.79773 -9.52106 -8.85332 -8.06635 -6.24387 0.08866 0.46492 1.29767 1.43708 1.47103 1.55957 2.21646 2.44964 2.75182 3.14512 3.30882 3.89066 3.96264 4.08350 4.40541 4.45824 4.47536 4.56075 4.57891 4.69553 4.79463 4.84509 4.91999 4.96869 5.05109 5.19663 5.25481 5.28388 5.32990 5.40175 5.46121 5.47255 5.60811 5.67490 5.69206 5.86986 6.12479 6.16926 6.82373 7.41544 8.96129 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029455 B = 0.005618 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.382011 B = 4982.560411 C = 5187.344226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.241 4.241 4 H 0.062 0.938 5 C -0.510 4.510 6 H 0.068 0.932 7 C 0.028 3.972 8 N -0.911 5.911 9 Si 0.946 3.054 10 H -0.287 1.287 11 H -0.282 1.282 12 H -0.252 1.252 13 S 1.337 4.663 14 O -0.907 6.907 15 C -0.461 4.461 16 C -0.083 4.083 17 C -0.150 4.150 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.050 4.050 23 H 0.079 0.921 24 H 0.024 0.976 25 H 0.040 0.960 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.260 0.740 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.667 3.086 -13.654 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.360 4.360 4 H 0.080 0.920 5 C -0.549 4.549 6 H 0.086 0.914 7 C -0.173 4.173 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.214 1.214 11 H -0.208 1.208 12 H -0.176 1.176 13 S 1.540 4.460 14 O -0.903 6.903 15 C -0.558 4.558 16 C -0.102 4.102 17 C -0.169 4.169 18 C -0.068 4.068 19 C -0.170 4.170 20 C -0.112 4.112 21 C -0.167 4.167 22 C -0.069 4.069 23 H 0.098 0.902 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.083 3.724 -13.743 16.889 hybrid contribution -1.226 -2.529 1.262 3.081 sum 7.857 1.195 -12.481 14.796 Atomic orbital electron populations 1.22025 0.97282 0.98891 1.03013 1.21266 0.95212 0.98348 0.98842 1.24906 1.02166 0.99568 1.09382 0.91966 1.20683 1.31444 1.12151 0.90630 0.91436 1.25612 0.95349 0.95605 1.00781 1.70038 1.39914 1.25338 1.19601 0.85726 0.77938 0.80238 0.78935 1.21379 1.20797 1.17560 1.68243 0.83491 1.10857 0.83423 1.92779 1.35488 1.82533 1.79510 1.27876 1.08468 1.05966 1.13505 1.21016 0.98542 0.94581 0.96095 1.21275 0.95259 1.00763 0.99590 1.20313 0.94343 0.95057 0.97083 1.20926 0.98709 1.00315 0.97093 1.20335 0.98316 0.95170 0.97399 1.20885 0.90872 1.01821 1.03160 1.21168 0.90645 0.99781 0.95275 0.90238 0.95692 0.94070 0.96230 0.92690 0.93102 0.88888 0.85179 0.90127 0.90870 0.89123 0.89522 0.90224 0.90234 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.01 9.33 71.98 0.67 -7.34 16 2 C -0.10 -5.05 5.32 30.60 0.16 -4.89 16 3 C -0.24 -11.64 2.47 29.85 0.07 -11.57 16 4 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 5 C -0.51 -26.51 7.04 25.60 0.18 -26.33 16 6 H 0.07 3.36 7.71 -2.91 -0.02 3.34 16 7 C 0.03 1.48 5.09 84.66 0.43 1.91 16 8 N -0.91 -51.69 11.42 21.45 0.24 -51.45 16 9 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 13 S 1.34 52.52 13.02 -56.49 -0.74 51.79 16 14 O -0.91 -44.03 13.55 -148.98 -2.02 -46.05 16 15 C -0.46 -16.52 5.30 22.27 0.12 -16.40 16 16 C -0.08 -3.16 8.07 22.27 0.18 -2.98 16 17 C -0.15 -4.65 9.70 22.27 0.22 -4.44 16 18 C -0.07 -1.73 5.88 -19.87 -0.12 -1.85 16 19 C -0.11 -1.91 9.19 71.23 0.65 -1.26 16 20 C -0.11 -2.72 5.88 -19.86 -0.12 -2.83 16 21 C -0.11 -1.72 9.20 71.24 0.66 -1.06 16 22 C -0.05 -1.40 9.41 22.27 0.21 -1.19 16 23 H 0.08 4.21 4.73 -2.39 -0.01 4.20 16 24 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 2.24 6.87 -2.39 -0.02 2.22 16 26 H 0.02 0.95 6.20 -2.39 -0.01 0.94 16 27 H 0.05 3.14 6.34 -2.39 -0.02 3.12 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.09 4.01 7.38 -2.91 -0.02 3.99 16 30 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 33 H 0.09 1.14 6.70 -2.39 -0.02 1.13 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.03 6.70 -2.39 -0.02 1.01 16 36 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 37 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -70.58 306.53 3.89 -66.69 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.05 Total: 14.96 kcal Atomic # 6 Polarization: -83.55 SS G_CDS: 3.32 Total: -80.23 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.24 Total: -51.45 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -2.02 Total: -46.05 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 52.52 SS G_CDS: -0.74 Total: 51.79 kcal Total: -70.58 3.89 -66.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.062 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds