Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52989 * 109.47481 * 2 1 4 4 H 1.09001 * 109.47250 * 185.98824 * 3 2 1 5 5 C 1.50699 * 109.47327 * 305.98747 * 3 2 1 6 6 H 1.08001 * 120.00033 * 114.53686 * 5 3 2 7 7 C 1.37885 * 120.00068 * 294.54426 * 5 3 2 8 8 N 1.31503 * 119.99732 * 351.01056 * 7 5 3 9 9 Si 1.86803 * 120.00086 * 171.00932 * 7 5 3 10 10 H 1.48498 * 109.46840 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.46859 * 299.99996 * 9 7 5 12 12 H 1.48501 * 109.47052 * 59.99883 * 9 7 5 13 13 S 1.81397 * 109.47305 * 65.98706 * 3 2 1 14 14 O 1.42105 * 109.47161 * 171.16417 * 13 3 2 15 15 C 1.76206 * 103.00161 * 62.11086 * 13 3 2 16 16 C 1.38251 * 120.00277 * 93.24788 * 15 13 3 17 17 C 1.38203 * 120.00297 * 179.97438 * 16 15 13 18 18 C 1.38259 * 119.99870 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.38217 * 120.00176 * 359.95481 * 18 17 16 21 21 C 1.38220 * 119.99698 * 272.98149 * 15 13 3 22 22 C 1.50698 * 120.00106 * 359.97438 * 21 15 13 23 23 H 1.09005 * 109.47360 * 186.93480 * 1 2 3 24 24 H 1.08997 * 109.46955 * 306.93374 * 1 2 3 25 25 H 1.08999 * 109.47056 * 66.93540 * 1 2 3 26 26 H 1.08999 * 109.46947 * 239.99350 * 2 1 3 27 27 H 1.09007 * 109.46830 * 120.00091 * 2 1 3 28 28 H 0.97000 * 120.00470 * 354.02451 * 8 7 5 29 29 H 1.08002 * 119.99536 * 0.02562 * 16 15 13 30 30 H 1.07999 * 120.00654 * 180.02562 * 17 16 15 31 31 H 1.09005 * 109.47421 * 89.99885 * 19 18 17 32 32 H 1.09009 * 109.47234 * 209.99911 * 19 18 17 33 33 H 1.08999 * 109.47451 * 329.99312 * 19 18 17 34 34 H 1.07997 * 119.99805 * 180.02562 * 20 18 17 35 35 H 1.09002 * 109.47077 * 94.81664 * 22 21 15 36 36 H 1.09002 * 109.47252 * 214.81688 * 22 21 15 37 37 H 1.09000 * 109.47378 * 334.81858 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1248 1.4442 -0.1072 5 6 1.4204 2.1943 -1.1496 6 1 0.7432 3.0132 -0.9568 7 6 1.7181 1.8368 -2.4476 8 7 2.6714 0.9632 -2.6868 9 14 0.7671 2.5935 -3.8663 10 1 1.2752 2.0469 -5.1501 11 1 -0.6747 2.2667 -3.7258 12 1 0.9443 4.0678 -3.8506 13 16 1.5855 2.2445 1.5622 14 8 2.2295 3.5082 1.6508 15 6 2.4379 1.2802 2.7657 16 6 3.6960 1.6622 3.1929 17 6 4.3643 0.9061 4.1372 18 6 3.7749 -0.2327 4.6543 19 6 4.5038 -1.0574 5.6836 20 6 2.5169 -0.6144 4.2275 21 6 1.8463 0.1448 3.2866 22 6 0.4722 -0.2680 2.8258 23 1 -0.3634 -1.0202 0.1241 24 1 -0.3633 0.6175 0.8214 25 1 -0.3633 0.4026 -0.9455 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.2229 0.6356 -1.9592 29 1 4.1562 2.5520 2.7893 30 1 5.3469 1.2047 4.4713 31 1 4.2550 -0.6961 6.6814 32 1 4.2053 -2.1017 5.5903 33 1 5.5786 -0.9713 5.5235 34 1 2.0564 -1.5037 4.6318 35 1 0.5628 -0.9969 2.0204 36 1 -0.0721 -0.7129 3.6589 37 1 -0.0681 0.6070 2.4647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -32.115914 kcal Electronic energy + Delta-G solvation = -18613.806313 eV Core-core repulsion = 15868.055671 eV Total energy + Delta-G solvation = -2745.750643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20642 -35.54107 -34.71211 -33.46969 -31.81726 -31.21210 -27.48346 -26.95566 -26.21787 -23.85026 -21.99723 -20.79969 -20.30532 -17.68543 -16.68020 -15.74309 -15.59200 -14.76389 -14.62684 -14.16407 -13.78401 -13.69180 -13.56720 -13.20010 -12.91966 -12.67645 -12.40360 -12.27858 -11.90738 -11.57544 -11.36993 -11.27215 -11.05319 -10.80067 -10.79061 -10.50053 -10.18137 -10.14389 -9.97884 -9.17569 -8.74923 -8.63433 -8.45080 -8.38839 -7.30365 -6.44614 -4.19157 1.27679 1.61358 2.70677 3.39889 3.42562 3.59246 3.62575 4.01175 4.46537 4.73746 4.86736 4.95773 5.13965 5.27473 5.35995 5.41392 5.50459 5.59104 5.76187 5.81954 5.92586 6.00609 6.05090 6.14900 6.18819 6.22743 6.42204 6.55990 6.61941 6.69630 6.73821 6.86929 6.99377 7.21507 7.27651 7.30634 7.85631 8.25894 8.69261 9.52602 10.91865 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030145 B = 0.006135 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.623058 B = 4562.967652 C = 4751.107517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.242 4.242 4 H 0.039 0.961 5 C -0.582 4.582 6 H 0.056 0.944 7 C 0.036 3.964 8 N -0.899 5.899 9 Si 1.061 2.939 10 H -0.282 1.282 11 H -0.282 1.282 12 H -0.287 1.287 13 S 1.284 4.716 14 O -0.877 6.877 15 C -0.451 4.451 16 C -0.050 4.050 17 C -0.146 4.146 18 C -0.065 4.065 19 C -0.114 4.114 20 C -0.143 4.143 21 C -0.007 4.007 22 C -0.143 4.143 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 -6.319 13.161 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.362 4.362 4 H 0.057 0.943 5 C -0.621 4.621 6 H 0.074 0.926 7 C -0.171 4.171 8 N -0.534 5.534 9 Si 0.889 3.111 10 H -0.207 1.207 11 H -0.208 1.208 12 H -0.213 1.213 13 S 1.486 4.514 14 O -0.872 6.872 15 C -0.545 4.545 16 C -0.069 4.069 17 C -0.166 4.166 18 C -0.065 4.065 19 C -0.171 4.171 20 C -0.162 4.162 21 C -0.008 4.008 22 C -0.199 4.199 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.997 -5.551 11.728 13.905 hybrid contribution 2.832 -0.016 1.369 3.146 sum -2.165 -5.567 13.097 14.395 Atomic orbital electron populations 1.21945 0.96205 0.99031 1.02928 1.21382 0.95986 0.96280 1.00429 1.24892 1.02204 1.00580 1.08549 0.94251 1.21188 1.31091 1.18878 0.90966 0.92606 1.25749 0.96697 0.95281 0.99418 1.70750 1.17361 1.28720 1.36560 0.83670 0.75774 0.75898 0.75805 1.20704 1.20816 1.21312 1.68775 1.14100 0.81796 0.86693 1.92962 1.76731 1.32971 1.84564 1.28083 1.04167 1.07701 1.14568 1.21098 0.93390 0.97910 0.94505 1.21027 1.00197 0.96113 0.99227 1.19956 0.94698 0.95209 0.96632 1.20808 0.99907 0.99067 0.97278 1.20935 0.95104 1.00536 0.99631 1.19526 0.95764 0.92048 0.93444 1.21576 0.92629 1.03292 1.02434 0.94447 0.93135 0.91115 0.91513 0.94395 0.91696 0.85865 0.86520 0.91214 0.91529 0.91683 0.86040 0.88764 0.91147 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.53 37.16 0.28 -2.19 16 2 C -0.10 -2.08 4.81 -26.74 -0.13 -2.21 16 3 C -0.24 -5.81 2.12 -27.89 -0.06 -5.87 16 4 H 0.04 1.09 7.38 -51.92 -0.38 0.70 16 5 C -0.58 -15.52 7.09 -34.44 -0.24 -15.76 16 6 H 0.06 1.47 7.73 -52.49 -0.41 1.07 16 7 C 0.04 0.98 5.25 -17.82 -0.09 0.88 16 8 N -0.90 -26.24 12.91 55.43 0.72 -25.52 16 9 Si 1.06 24.25 29.91 -169.99 -5.08 19.16 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 13 S 1.28 26.73 10.08 -107.50 -1.08 25.64 16 14 O -0.88 -23.14 16.82 -35.23 -0.59 -23.73 16 15 C -0.45 -8.47 5.15 -39.58 -0.20 -8.68 16 16 C -0.05 -0.97 9.45 -39.59 -0.37 -1.34 16 17 C -0.15 -2.35 9.70 -39.59 -0.38 -2.74 16 18 C -0.06 -0.91 5.88 -104.62 -0.62 -1.53 16 19 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 20 C -0.14 -2.00 9.38 -39.58 -0.37 -2.37 16 21 C -0.01 -0.10 4.95 -104.62 -0.52 -0.62 16 22 C -0.14 -1.75 7.56 36.00 0.27 -1.47 16 23 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 24 H 0.05 0.73 4.52 -51.93 -0.23 0.49 16 25 H 0.07 1.37 7.34 -51.93 -0.38 0.99 16 26 H 0.07 1.56 6.62 -51.93 -0.34 1.22 16 27 H 0.04 0.69 4.74 -51.92 -0.25 0.45 16 28 H 0.27 8.00 6.27 -40.82 -0.26 7.74 16 29 H 0.12 2.59 7.38 -52.49 -0.39 2.20 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.09 -51.92 -0.42 0.17 16 33 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.09 1.15 4.98 -51.93 -0.26 0.89 16 36 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.08 0.95 4.70 -51.93 -0.24 0.71 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -34.36 297.94 -8.51 -42.86 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.87 Total: 1.79 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: -2.08 Total: -44.69 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.72 Total: -25.52 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.59 Total: -23.73 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.08 Total: 19.16 kcal Atomic # 16 Polarization: 26.73 SS G_CDS: -1.08 Total: 25.64 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.36 -8.51 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.746 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds