Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52989 * 109.47481 * 2 1 4 4 H 1.09001 * 109.47250 * 185.98824 * 3 2 1 5 5 C 1.50699 * 109.47327 * 305.98747 * 3 2 1 6 6 H 1.08001 * 120.00033 * 114.53686 * 5 3 2 7 7 C 1.37885 * 120.00068 * 294.54426 * 5 3 2 8 8 N 1.31503 * 119.99732 * 351.01056 * 7 5 3 9 9 Si 1.86803 * 120.00086 * 171.00932 * 7 5 3 10 10 H 1.48498 * 109.46840 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.46859 * 299.99996 * 9 7 5 12 12 H 1.48501 * 109.47052 * 59.99883 * 9 7 5 13 13 S 1.81397 * 109.47305 * 65.98706 * 3 2 1 14 14 O 1.42105 * 109.47161 * 171.16417 * 13 3 2 15 15 C 1.76206 * 103.00161 * 62.11086 * 13 3 2 16 16 C 1.38251 * 120.00277 * 93.24788 * 15 13 3 17 17 C 1.38203 * 120.00297 * 179.97438 * 16 15 13 18 18 C 1.38259 * 119.99870 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.38217 * 120.00176 * 359.95481 * 18 17 16 21 21 C 1.38220 * 119.99698 * 272.98149 * 15 13 3 22 22 C 1.50698 * 120.00106 * 359.97438 * 21 15 13 23 23 H 1.09005 * 109.47360 * 186.93480 * 1 2 3 24 24 H 1.08997 * 109.46955 * 306.93374 * 1 2 3 25 25 H 1.08999 * 109.47056 * 66.93540 * 1 2 3 26 26 H 1.08999 * 109.46947 * 239.99350 * 2 1 3 27 27 H 1.09007 * 109.46830 * 120.00091 * 2 1 3 28 28 H 0.97000 * 120.00470 * 354.02451 * 8 7 5 29 29 H 1.08002 * 119.99536 * 0.02562 * 16 15 13 30 30 H 1.07999 * 120.00654 * 180.02562 * 17 16 15 31 31 H 1.09005 * 109.47421 * 89.99885 * 19 18 17 32 32 H 1.09009 * 109.47234 * 209.99911 * 19 18 17 33 33 H 1.08999 * 109.47451 * 329.99312 * 19 18 17 34 34 H 1.07997 * 119.99805 * 180.02562 * 20 18 17 35 35 H 1.09002 * 109.47077 * 94.81664 * 22 21 15 36 36 H 1.09002 * 109.47252 * 214.81688 * 22 21 15 37 37 H 1.09000 * 109.47378 * 334.81858 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1248 1.4442 -0.1072 5 6 1.4204 2.1943 -1.1496 6 1 0.7432 3.0132 -0.9568 7 6 1.7181 1.8368 -2.4476 8 7 2.6714 0.9632 -2.6868 9 14 0.7671 2.5935 -3.8663 10 1 1.2752 2.0469 -5.1501 11 1 -0.6747 2.2667 -3.7258 12 1 0.9443 4.0678 -3.8506 13 16 1.5855 2.2445 1.5622 14 8 2.2295 3.5082 1.6508 15 6 2.4379 1.2802 2.7657 16 6 3.6960 1.6622 3.1929 17 6 4.3643 0.9061 4.1372 18 6 3.7749 -0.2327 4.6543 19 6 4.5038 -1.0574 5.6836 20 6 2.5169 -0.6144 4.2275 21 6 1.8463 0.1448 3.2866 22 6 0.4722 -0.2680 2.8258 23 1 -0.3634 -1.0202 0.1241 24 1 -0.3633 0.6175 0.8214 25 1 -0.3633 0.4026 -0.9455 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.2229 0.6356 -1.9592 29 1 4.1562 2.5520 2.7893 30 1 5.3469 1.2047 4.4713 31 1 4.2550 -0.6961 6.6814 32 1 4.2053 -2.1017 5.5903 33 1 5.5786 -0.9713 5.5235 34 1 2.0564 -1.5037 4.6318 35 1 0.5628 -0.9969 2.0204 36 1 -0.0721 -0.7129 3.6589 37 1 -0.0681 0.6070 2.4647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084259334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -54.842691 kcal Electronic energy + Delta-G solvation = -18614.791820 eV Core-core repulsion = 15868.055671 eV Total energy + Delta-G solvation = -2746.736150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43363 -37.33110 -36.67041 -34.72761 -33.23415 -32.84007 -28.98695 -28.08962 -27.57034 -25.74083 -23.28675 -22.24501 -21.78597 -19.40654 -18.45954 -17.37516 -16.94055 -16.34711 -15.96225 -15.77595 -15.59897 -14.99956 -14.74248 -14.66392 -14.28398 -14.09235 -13.75141 -13.40457 -13.31915 -13.01767 -12.91047 -12.64590 -12.53718 -12.27083 -12.17403 -12.00652 -11.96043 -11.78810 -11.52442 -10.99872 -10.61472 -10.51172 -9.93986 -9.68387 -9.12110 -8.63264 -6.38078 -0.06302 0.35468 1.10001 1.53668 1.60898 1.79280 2.01592 2.55910 2.65186 3.00393 3.18623 3.77237 3.87551 3.94311 4.30878 4.36098 4.40072 4.53145 4.55645 4.61550 4.67120 4.77856 4.83755 4.90398 5.02290 5.09931 5.12235 5.20254 5.29780 5.37125 5.40493 5.49797 5.53439 5.58896 5.75071 5.90873 6.03100 6.13338 6.48930 7.41859 8.71512 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030145 B = 0.006135 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.623058 B = 4562.967652 C = 4751.107517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.257 4.257 4 H -0.017 1.017 5 C -0.590 4.590 6 H 0.054 0.946 7 C -0.014 4.014 8 N -0.926 5.926 9 Si 1.102 2.898 10 H -0.286 1.286 11 H -0.247 1.247 12 H -0.282 1.282 13 S 1.346 4.654 14 O -0.943 6.943 15 C -0.481 4.481 16 C -0.085 4.085 17 C -0.158 4.158 18 C -0.055 4.055 19 C -0.113 4.113 20 C -0.140 4.140 21 C -0.001 4.001 22 C -0.152 4.152 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.255 0.745 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.167 0.833 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -8.910 15.655 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.376 4.376 4 H 0.002 0.998 5 C -0.628 4.628 6 H 0.073 0.927 7 C -0.215 4.215 8 N -0.563 5.563 9 Si 0.923 3.077 10 H -0.212 1.212 11 H -0.171 1.171 12 H -0.208 1.208 13 S 1.551 4.449 14 O -0.939 6.939 15 C -0.579 4.579 16 C -0.104 4.104 17 C -0.177 4.177 18 C -0.055 4.055 19 C -0.169 4.169 20 C -0.159 4.159 21 C -0.003 4.003 22 C -0.208 4.208 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.185 0.815 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.220 -8.124 14.205 17.885 hybrid contribution 3.634 0.704 0.823 3.792 sum -3.586 -7.419 15.027 17.139 Atomic orbital electron populations 1.21970 0.93082 1.02040 1.02858 1.21274 0.98622 0.93270 0.99780 1.25108 0.98520 1.03409 1.10597 0.99842 1.21537 1.30522 1.18674 0.92115 0.92735 1.27148 0.96798 0.95038 1.02494 1.70874 1.18776 1.30785 1.35815 0.83171 0.76568 0.75233 0.72687 1.21180 1.17125 1.20833 1.67736 1.12976 0.79627 0.84539 1.92832 1.78416 1.37283 1.85364 1.27605 1.04811 1.10036 1.15417 1.21023 0.94567 0.98001 0.96826 1.21249 1.00934 0.96764 0.98723 1.20514 0.94884 0.93998 0.96076 1.20914 0.99827 0.99510 0.96630 1.21489 0.94771 1.01273 0.98326 1.19969 0.97156 0.90254 0.92878 1.21768 0.90859 1.03756 1.04382 0.90507 0.90269 0.93574 0.95097 0.92026 0.93494 0.89742 0.84955 0.89244 0.89270 0.91108 0.81524 0.88151 0.86789 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 7.53 71.98 0.54 -4.09 16 2 C -0.09 -3.75 4.81 30.59 0.15 -3.60 16 3 C -0.26 -13.02 2.12 29.84 0.06 -12.96 16 4 H -0.02 -1.02 7.38 -2.39 -0.02 -1.04 16 5 C -0.59 -32.72 7.09 25.60 0.18 -32.54 16 6 H 0.05 2.97 7.73 -2.91 -0.02 2.95 16 7 C -0.01 -0.82 5.25 84.66 0.44 -0.37 16 8 N -0.93 -56.77 12.91 21.45 0.28 -56.50 16 9 Si 1.10 49.43 29.91 68.60 2.05 51.49 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 S 1.35 58.07 10.08 -56.49 -0.57 57.50 16 14 O -0.94 -53.00 16.82 -148.98 -2.51 -55.51 16 15 C -0.48 -18.24 5.15 22.27 0.11 -18.12 16 16 C -0.08 -3.44 9.45 22.26 0.21 -3.23 16 17 C -0.16 -4.97 9.70 22.27 0.22 -4.76 16 18 C -0.05 -1.35 5.88 -19.87 -0.12 -1.46 16 19 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 20 C -0.14 -3.25 9.38 22.27 0.21 -3.04 16 21 C 0.00 -0.03 4.95 -19.87 -0.10 -0.13 16 22 C -0.15 -3.00 7.56 71.24 0.54 -2.46 16 23 H 0.08 1.90 7.81 -2.38 -0.02 1.88 16 24 H 0.08 2.07 4.52 -2.39 -0.01 2.06 16 25 H 0.05 1.73 7.34 -2.39 -0.02 1.72 16 26 H 0.03 1.49 6.62 -2.39 -0.02 1.47 16 27 H 0.06 2.21 4.74 -2.38 -0.01 2.20 16 28 H 0.25 16.12 6.27 -92.71 -0.58 15.54 16 29 H 0.08 3.96 7.38 -2.91 -0.02 3.94 16 30 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.09 1.05 8.09 -2.38 -0.02 1.03 16 33 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.10 1.95 4.98 -2.39 -0.01 1.94 16 36 H 0.11 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.08 1.63 4.70 -2.39 -0.01 1.62 16 Total: -1.00 -82.61 297.94 3.67 -78.94 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.26 Total: 11.89 kcal Atomic # 6 Polarization: -90.97 SS G_CDS: 3.16 Total: -87.80 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.50 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -2.51 Total: -55.51 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.49 kcal Atomic # 16 Polarization: 58.07 SS G_CDS: -0.57 Total: 57.50 kcal Total: -82.61 3.67 -78.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.096 kcal (2) G-P(sol) polarization free energy of solvation -82.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds